EsuBft1076_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1076_4a-0001
Unique Name	EsuBft1076_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_211	contig	Scaffold_211:87566..93465 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D8LRM9
ProteomeId	EsuBft1076_4
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	152
Hectar predicted targeting category	no signal peptide or anchor
Evalue	1.82e-10
EggNOG OGs	28Q1A@1\|root,2QWQ0@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
GOs	GO:0003674,GO:0005488,GO:0005515
Description	Domain of unknown function (DUF4139)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1076_4a	EsuBft1076_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_211 87566..93465 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1076_4a-0001	EsuBft1076_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_211 90485..93365 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1076_4a-0001-exon	agat-exon-57775	Ectocarpus subulatus male Bft15b	exon	Scaffold_211 87566..88334 -
EsuBft1076_4a-0001-exon	agat-exon-57778	Ectocarpus subulatus male Bft15b	exon	Scaffold_211 88731..88904 -
EsuBft1076_4a-0001-exon	EsuBft1076_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_211 89477..89603 -
EsuBft1076_4a-0001-exon	agat-exon-57776	Ectocarpus subulatus male Bft15b	exon	Scaffold_211 90300..90510 -
EsuBft1076_4a-0001-exon	agat-exon-57777	Ectocarpus subulatus male Bft15b	exon	Scaffold_211 93221..93465 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1076_4a-0001-exon	agat-three_prime_utr-717	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_211 87566..88334 -
EsuBft1076_4a-0001-exon	agat-three_prime_utr-718	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_211 88731..88904 -
EsuBft1076_4a-0001-exon	agat-three_prime_utr-719	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_211 89477..89603 -
EsuBft1076_4a-0001-exon	agat-three_prime_utr-720	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_211 90300..90484 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1076_4a-0001-cds	EsuBft1076_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_211 90485..90510 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1076_4a-0001-exon	agat-five_prime_utr-450	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_211 93366..93465 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_211:87566..93465-
coding sequence from alignment at Scaffold_211:87566..93465-

spliced messenger RNA

>EsuBft1076_4a-0001 ID=EsuBft1076_4a-0001|Name=EsuBft1076_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1526bp|location=Sequence derived from alignment at Scaffold_211:87566..93465- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TAGTCACAGAACAGGGAATCCCAGAATCAACGGTGCTGTTGTCGACCAAG
ACCCCCTCTATACAAGGCCATGGCTAGCAGCACTTCTCCCACCGTGCCCA
ATGCCTGCTCCAATCCGCAGAAAGTCATTGTCAAGCCTCGACGCACCCGT
GAAGAGGGCCACCGTCTACAAGAATAGGGCCGAAATCACTCGAGTCGTCT
CCTTCTCTCCCACCGATGGCTCCCGATGGGGTAGGCCTGCACAAGGGTGT
TCGATGCGATGTCGAAGCTAGACAGCGAGCACACCGCCGCTCTGACGAAG
CACGGCAGTGCTGCCATGGCTGGGCGTGCAAGGGCGTCTGCGTCGCCAAA
GGGAATAATTTTTTTTTGGTTCTCCGACAAGCTGAAGCCGCAGGCGAAGG
CTAAGGTGGTCGTCACCGTTGATGTGGAGGAGCTGCTGTGCCCCATCGAG
TTGGAGGTGTCCTACATGAGTGAACGTGCATCGTGGTCGCCATTGTACAC
CCTGCGCGTGGACGCAATGACGGGTTGCATGTCGTGCACGTTCTTCGGAA
GGGTGTCCCAAAGCACCAACGAGGACTGGGAAGGCGTGGCGTTAAAGCTG
TCTACGGCCGAGCCCTCCGCCCGCAGTACCCCATCGTTCCTGACAACGAA
GACGGTGTCCCTCAAGTCTACCGCCGCTGCCCCAATACAGCTGAGGAGAG
TCTTGACTCGGGTGTGTTTCGTGCTCGCCCAAGCCGTTTCAGTTCGAAGC
TGCCATTTCGCCGCCGCCTCCGCCTTCCCACGCCAGTGCGCACTTGTTTG
GCGTGACATCTGTACCTGGTGCCGGCAAGACGTTTGACGCAGCAGCGCCG
CAGGGTGTAGGCTTTTCGTTCGGTGCTATGCTACCCCGGCGTCGGCGGTG
TCGGGTTTTGGGGCGGTAGGCAACCCCTGCCGTCGGTGGCTTCGGTTTTG
GCTTCGGTGCTCAGGCAACAGCGGCAGCGACAGCGACAGAGGAAGCGACG
GGTGGGGATTTCGTTTCCTCGGCCCCTCCGCCCCCCCTCGAGGCCAAGCC
CGCCGTGGCTCAGGTCGAGGGCGGCGGAGTGGGTGCCGTTAAGTTCGCCA
TCGAGAAGCCGGCCACCGTAAAGGGAGATTATTTTTTACGTGGCTATGCA
TATAGCACGAAAGAGTGAGGCAGGTTTGACGAGGAGGTATACTGCTGTTG
AGATCATTCAGGGCGGACATGGGTTTGTTATGTGCTTCCTGCGCAAAGCG
CGGTTCCGCGGAGGGTTCGCAATATGTACGTCGAAAGCATTGATTGTTGG
TGGCCCGAGTACGAGGAAATCGGGGTCGGAAAGCGGGCAATTTCATGGGT
CGGGGACACGGCTGTGGTAGCTTTTCTTGCATCCTTTAGGTTCGTACCCT
GCATGTCTTGGTGCGGACACTGGTTCTCGAGCATGTAAAAGGTTGGCTCA
GACAGCCATGGCAATGCTCAAGATCTGTGTGCCAAGCTCGTCGCCGCCAT
ACTCTCGTTAGCCTGCTGCTGCTGCT

protein sequence of EsuBft1076_4a-0001

>EsuBft1076_4 ID=EsuBft1076_4|Name=EsuBft1076_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=56bp
MPAPIRRKSLSSLDAPVKRATVYKNRAEITRVVSFSPTDGSRWGRPAQGC
SMRCRS

mRNA from alignment at Scaffold_211:87566..93465-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1076_4a-0001 ID=EsuBft1076_4a-0001|Name=EsuBft1076_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5900bp|location=Sequence derived from alignment at Scaffold_211:87566..93465- (Ectocarpus subulatus male Bft15b)
TAGTCACAGAACAGGGAATCCCAGAATCAACGGTGCTGTTGTCGACCAAG
ACCCCCTCTATACAAGGCCATGGCTAGCAGCACTTCTCCCACCGTGCCCA
ATGCCTGCTCCAATCCGCAGAAAGTCATTGTCAAGCCTCGACGCACCCGT
GAAGAGGGCCACCGTCTACAAGAATAGGGCCGAAATCACTCGAGTCGTCT
CCTTCTCTCCCACCGATGGCTCCCGATGGGGTAGGCCTGCACAAGGTAAG
CCTCCCACTGCCGTCGGTCTTGCCGTGTGCTGGTAGGTGAAGGGGAGGTG
GAGGAGTGAGCCATTTCACGATACTCGCAAAAGATTATTTCTCCCTATCT
GTTTCTGCCCGTGCGTGTTCCACAGACAGGCGATCCAACACACACCATCA
TGAATGCATCCCTCCGCATGTAGTCCTTCAAGTCGATCTTGATGTTGACC
TGAGACAAGGTTGCGAACAACATACCTAAGTACTCCGTATTAGTTACCAG
GGAGCACTAAACCATCACACTAGCTGTATCATGAGCACACAAGACACATG
ATGACTGGGTGGGGTTCGTTTTCATATACAGCAGCAGTTGGGGCTTGTCA
TGTCGCGAAGTCTACAAGAGAGTTGCAGAACTTTTTTTTGGGGTCAGACA
AATTGCTGGACAGCCGGACAAACCAAGAGCACAATAGTGTTTTTCTTATC
ATGTTACCGCAGTGTACTCCGAAGTAAATATTTTAGCGGGGCATCATTTT
CTTTGGTCTGAGACGTCCCTCTTCCTGCCCACCGCTCAGATAATACACCC
CACCACGTTCGTATCTGAGGCATGGGTTGCTGTTCAGCTGCCTCAGATTC
TCAGCGCGGAAGCAGAGTACTACTGTAGTAAACCACAAAATATTGCATCG
CATCGTCCGAGCGTCCTGTCACCCCCGCTGAGCAGACCTGCTCCTCCGAC
GCGGGTGGTGGGTGTCAACATGTAAGTATGTGGTGGGCACTGTGGAACCG
GCAAGGAAGGGTGGGATGATACAAGGTTTAACAGAACAGACCACAACTCT
TCTTGCCTAAACCAATTGAGAAGAACACCCAGACCATCAGCTGTAGTTCA
CACGAACTGCTGGGTGGCCCAAAAGTTGCCTTTTGTTTTTCTCTACAGCG
CCACCTCATCTAGACAGCTGTTGCGGTTTGGAATGCTGCTTTAAAATCCC
TGTGGGAGGGTACTTCTAGGTTGAAGCTGCTGCTGCAGCTACTGCTACAT
CTTGCTGCTGCTGAACCGCCTGATTCTTTTACGTCAAAGCTGCTGCTACT
GCTGCTGCTACTACTGCTCCAAATTTGCTGCTGCTGAATTGCCGCCTCTC
TCTCTCTCTCTTGATTGAAATAAGAAGCTGACCGGCTGAGAGTTTGCTTG
CAAGAAGCCTTGAGGGTGTTTCTCTGAGGTGACAATACCACCGTAAGATG
CTCCTGGCACCTTGGATGATAAATAGCAGGAGCCAACCAAGCAACTCTCT
CTTGTGTAGACAAGGGAAGAAGCAGCGTGGGAACGGCGCGCTCGAATGTT
TCAGCCAATCAACGGGGGGCAGGAGCCACGTGATGCCGAAAAATATCTGA
GTCCCCTCACGATCTTTTAGATGCCAATTTTTGTCTGGGCGATTTTATTT
GAGCAAAACGAAACATTTCGATACCTCCACCCGCCTCTTCTCACAGCCAA
GACAACATTCCGACGCCCAAACCATTACCCAAAACAGGCAACATGGCGGG
TTCTTAAGCGGGTTACTTGCGTTGTGAAACTCTCGGCAACAACATTGATA
CAAGGAGAGGACTTGATGCAACAGCTACGTGCGTGCTGGCACGCTTAGAT
GTGTCGCAAGGGCGGCGCGGTCGACGGCTGCAGCTGCACAGCAGTCCGCC
AGCTGAGTCCACGCCACCCAAGATGCTCCACGTGTCGTTACAAACCCAAT
TAATCCCCCGAACTGTGGTCGCTTTATCGCTCAAGGCAGCTGGGGTTTTG
AATGATGTGGACCCTACGTTTGAAGCCTTTTCTGGTCTCATCTTCAGGAG
AAACCGACGTTGTGCTCCCGGAAGAGAGAAGGCAGCAGATACCTAGCCAT
GCTGCGAGGTGGTTGAATACAACGGCAGCGTCCGCAGAAGCGCTAGTATA
CCAGCACAACATTTGGAAGTATATGCTGGCAAAGTTCCGTGTTGGTTGCG
ACCTCGGTTCCATCTGTTTTTTTTGTTGAAGATTCTATTTATTGTTTCCT
TGGTGTACGCTTTATGATCGCGTTCTTGGGTGTACTGCTTTGCAAGGCAG
GATCACGAACGACGAGGAGTTGTTCATCAGAGACTCCTTTCAGTTGTCGG
CCCATCGACTACAGTCGTGACCAAATCAATGACGTAGCAACGGATTGAAA
CACATAATATGGAACATGAGGAAGACGCATAGAAAAGGGAGGGTGGGGGG
GGCAGGAAGCGAGGCAAAGACCAGAGAGGCGGAGAGAAGGAGAGAAGGAG
AGATACTACTACTGCCGCACATACCCAGTCACCCGAACCGACGGAATCGG
AGAGTGATAGGGAGAGAGTTGAAGGGACCTTGAAATGTGTGTGAGTCTGT
GCGACTAGGCAGGGAAGAGAGAAGAGGGTCGCACACTATTTGCTTCTACT
TTTCGTACTTGGTAGAACACGCTGTACGGCATCTGGACCTGTCTCTACCT
CTTTCTGTTTGATTGTCCGGTGTGCGGCTTGTGCCCTGCTTATCCATGAT
GAGATGCAATGCGGCCTCTGCGTACCCTTCTCCTTTTTCAGTTTCATTAC
ATTAGTGCAATACCCAAGGTGAAGTAGACGCGTGATTCAACACTGTACTC
GGAACACGGAATCACCAGCAGTGCACAGCCTTAAGAAAACGCCGCCCCTG
CCCTCCCCGCCACACCGCACACCCACCGTGTCGTATTTGCACTAACCTTC
CGAAGGGTGTTCGATGCGATGTCGAAGCTAGACAGCGAGCACACCGCCGC
TCTGACGAAGCACGGCAGTGCTGCCATGGCTGGGCGTGCAAGGGCGTCTG
CGTCGCCAAAGGGAATAATTTTTTTTTGGTTCTCCGACAAGCTGAAGCCG
CAGGCGAAGGCTAAGGTGGTCGTCACCGTTGATGTGGAGGAGCTGCTGTG
CCCCATCGAGTTGGAGGTATGCATACACATGTTGGAACGCGGGTGAGATT
TTTTCTCCACGCTGGCGGACGTCTTTGAATACGTGCATTACGAGCTTGGG
GTTGAGACGGAGGGGGGAAGAGACAGAGAGCGAGGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGG
GGGGGGGGACCGCGGGGAGAGATGGAAAGAGAAGAAGCAAAGAGATGCCG
CATGCGTACGAAGCGGACGCTGGGGTTTAACTAGGGGCAGGCGGTCGCTG
ACCCGCAAACTGAATCACACGTGCAGCCTTGTGGTTGCAGCAGGTTTGTA
TTCGCGAAGCAGGCACTGGAACAGCGTGGCGTTGATACGAAGACAGGCAG
GTTCCCGAAAGGACATGCGGCACAAGAACGCGGCTGGCAAGCGAATTTCT
TTAGGTCGTTCCGATGCGATTCTGCGGGAACGTTCATGGGATTCGACGTT
CCCCCCTGCCTCGATCTTGCTCTTGTTCTCATCCCCGCTTTTCCTCGCGG
TTGCTCTGGATCCCCATGTGCCACCCGCTATCTTTTTTCGTCGGACACCC
GTCTCCCTGAAACCGATTTCGACTGAGTGAGTTGACTCGAAGTGTTTTAC
TGTTTGACGCAGGTGTCCTACATGAGTGAACGTGCATCGTGGTCGCCATT
GTACACCCTGCGCGTGGACGCAATGACGGGTTGCATGTCGTGCACGTTCT
TCGGAAGGGTGTCCCAAAGCACCAACGAGGACTGGGAAGGTGCGCTCAGC
TCGTCAAACCCGCGACGTTCTTCTCAGTACAGCACGCCCCCTCGCTGTAG
CTTCATGGCCAAGCTTCCTTTTGGATAGGCTATACTTTTTTGCGATGGGC
ATTGCGATCCCCGCCTGATGTCTTTTCCTGTTGTTAAGTCTATCCCCCTC
TGCTCAAAACAGTACAATAGAGGCCGTTTGCTTTGTGGCTCGACGAATGG
TCGCTCCGAAGCGGTGGAGCAGTCCTCAACCTATCTTTGTACTCTGTCCA
TTTCCCCCCAACCGAGTCGTTGACGGGTTGCTATTCGTCGAGGAGACAAG
CGTAACCCCTTCTCTCTGTGGAAAACCTTCTTCGTTTCTATCGAGTCTAC
TCCTAAACAAAACCGTCCTGGTGACAAGTGAAATCCCGTCGGCGTGTTCT
ACGTATCTAGCAACGGATCTGATCCTGGCTGTCGGCTTTTCCTCGACAGT
TACTCGGCGCAGCATCCATAGTGCCTACAAGTATGACCCTGAACCATCAA
ACTACGCCCGTGGCACATGCCCCGTGTACTCCATCTTTCCGATCCCGTCT
TTGCCCCGCAGGCGTGGCGTTAAAGCTGTCTACGGCCGAGCCCTCCGCCC
GCAGTACCCCATCGTTCCTGACAACGAAGACGGTGTCCCTCAAGTCTACC
GCCGCTGCCCCAATACAGCTGAGGAGAGTCTTGACTCGGGTGTGTTTCGT
GCTCGCCCAAGCCGTTTCAGTTCGAAGCTGCCATTGTGAGTTACTCTGGC
TTGGAGGAAAGCTCGGGTGCCTTCGTTGTTTTGAGTCCTCGCTTGACTCA
TCGGGGGAGACACAGAGGGTCATATCAGCGGTTTAGCGCTGCCGTCACCG
CCGCGTGGGCAGGAACCTAAACTCTCCCAGCTAGACCAGGTATCATCGAT
GCCGTGCTAGCACTCTTAGCTTCGTGGCCGCCAACATGCGACCACGCACA
CACACCACCGCTAGCGTCGTACGAGGTGCGGCGTTACGAGCAAATGCGCG
TGGCAAGTTCGCGCAACCCTTACCGTTGTCGAATTCATTTGCGGATGGCA
GCGCAAATTAATCACTCCGGGAACATCGCATTCGCGCCCACCGTTGCCCT
TCGCTCCCCCCCGCGTGTCGGCTCGAGACAGTCGCCGCCGCCTCCGCCTT
CCCACGCCAGTGCGCACTTGTTTGGCGTGACATCTGTACCTGGTGCCGGC
AAGACGTTTGACGCAGCAGCGCCGCAGGGTGTAGGCTTTTCGTTCGGTGC
TATGCTACCCCGGCGTCGGCGGTGTCGGGTTTTGGGGCGGTAGGCAACCC
CTGCCGTCGGTGGCTTCGGTTTTGGCTTCGGTGCTCAGGCAACAGCGGCA
GCGACAGCGACAGAGGAAGCGACGGGTGGGGATTTCGTTTCCTCGGCCCC
TCCGCCCCCCCTCGAGGCCAAGCCCGCCGTGGCTCAGGTCGAGGGCGGCG
GAGTGGGTGCCGTTAAGTTCGCCATCGAGAAGCCGGCCACCGTAAAGGGA
GATTATTTTTTACGTGGCTATGCATATAGCACGAAAGAGTGAGGCAGGTT
TGACGAGGAGGTATACTGCTGTTGAGATCATTCAGGGCGGACATGGGTTT
GTTATGTGCTTCCTGCGCAAAGCGCGGTTCCGCGGAGGGTTCGCAATATG
TACGTCGAAAGCATTGATTGTTGGTGGCCCGAGTACGAGGAAATCGGGGT
CGGAAAGCGGGCAATTTCATGGGTCGGGGACACGGCTGTGGTAGCTTTTC
TTGCATCCTTTAGGTTCGTACCCTGCATGTCTTGGTGCGGACACTGGTTC
TCGAGCATGTAAAAGGTTGGCTCAGACAGCCATGGCAATGCTCAAGATCT
GTGTGCCAAGCTCGTCGCCGCCATACTCTCGTTAGCCTGCTGCTGCTGCT

Coding sequence (CDS) from alignment at Scaffold_211:87566..93465-

>EsuBft1076_4a-0001 ID=EsuBft1076_4a-0001|Name=EsuBft1076_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=171bp|location=Sequence derived from alignment at Scaffold_211:87566..93465- (Ectocarpus subulatus male Bft15b)
ATGCCTGCTCCAATCCGCAGAAAGTCATTGTCAAGCCTCGACGCACCCGT
GAAGAGGGCCACCGTCTACAAGAATAGGGCCGAAATCACTCGAGTCGTCT
CCTTCTCTCCCACCGATGGCTCCCGATGGGGTAGGCCTGCACAAGGGTGT
TCGATGCGATGTCGAAGCTAG