EsuBft1076_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1076_4a-0001
Unique NameEsuBft1076_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_211contigScaffold_211:87566..93465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LRM9
ProteomeIdEsuBft1076_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length152
Hectar predicted targeting categoryno signal peptide or anchor
Evalue1.82e-10
EggNOG OGs28Q1A@1|root,2QWQ0@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
GOsGO:0003674,GO:0005488,GO:0005515
DescriptionDomain of unknown function (DUF4139)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1076_4aEsuBft1076_4aEctocarpus subulatus male Bft15bgeneScaffold_211 87566..93465 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1076_4a-0001EsuBft1076_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_211 90485..93365 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1076_4a-0001-exonagat-exon-57775Ectocarpus subulatus male Bft15bexonScaffold_211 87566..88334 -
EsuBft1076_4a-0001-exonagat-exon-57778Ectocarpus subulatus male Bft15bexonScaffold_211 88731..88904 -
EsuBft1076_4a-0001-exonEsuBft1076_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_211 89477..89603 -
EsuBft1076_4a-0001-exonagat-exon-57776Ectocarpus subulatus male Bft15bexonScaffold_211 90300..90510 -
EsuBft1076_4a-0001-exonagat-exon-57777Ectocarpus subulatus male Bft15bexonScaffold_211 93221..93465 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1076_4a-0001-exonagat-three_prime_utr-717Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_211 87566..88334 -
EsuBft1076_4a-0001-exonagat-three_prime_utr-718Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_211 88731..88904 -
EsuBft1076_4a-0001-exonagat-three_prime_utr-719Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_211 89477..89603 -
EsuBft1076_4a-0001-exonagat-three_prime_utr-720Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_211 90300..90484 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1076_4a-0001-cdsEsuBft1076_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_211 90485..90510 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1076_4a-0001-exonagat-five_prime_utr-450Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_211 93366..93465 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1076_4a-0001 ID=EsuBft1076_4a-0001|Name=EsuBft1076_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1526bp|location=Sequence derived from alignment at Scaffold_211:87566..93465- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TAGTCACAGAACAGGGAATCCCAGAATCAACGGTGCTGTTGTCGACCAAG
ACCCCCTCTATACAAGGCCATGGCTAGCAGCACTTCTCCCACCGTGCCCA
ATGCCTGCTCCAATCCGCAGAAAGTCATTGTCAAGCCTCGACGCACCCGT
GAAGAGGGCCACCGTCTACAAGAATAGGGCCGAAATCACTCGAGTCGTCT
CCTTCTCTCCCACCGATGGCTCCCGATGGGGTAGGCCTGCACAAGGGTGT
TCGATGCGATGTCGAAGCTAGACAGCGAGCACACCGCCGCTCTGACGAAG
CACGGCAGTGCTGCCATGGCTGGGCGTGCAAGGGCGTCTGCGTCGCCAAA
GGGAATAATTTTTTTTTGGTTCTCCGACAAGCTGAAGCCGCAGGCGAAGG
CTAAGGTGGTCGTCACCGTTGATGTGGAGGAGCTGCTGTGCCCCATCGAG
TTGGAGGTGTCCTACATGAGTGAACGTGCATCGTGGTCGCCATTGTACAC
CCTGCGCGTGGACGCAATGACGGGTTGCATGTCGTGCACGTTCTTCGGAA
GGGTGTCCCAAAGCACCAACGAGGACTGGGAAGGCGTGGCGTTAAAGCTG
TCTACGGCCGAGCCCTCCGCCCGCAGTACCCCATCGTTCCTGACAACGAA
GACGGTGTCCCTCAAGTCTACCGCCGCTGCCCCAATACAGCTGAGGAGAG
TCTTGACTCGGGTGTGTTTCGTGCTCGCCCAAGCCGTTTCAGTTCGAAGC
TGCCATTTCGCCGCCGCCTCCGCCTTCCCACGCCAGTGCGCACTTGTTTG
GCGTGACATCTGTACCTGGTGCCGGCAAGACGTTTGACGCAGCAGCGCCG
CAGGGTGTAGGCTTTTCGTTCGGTGCTATGCTACCCCGGCGTCGGCGGTG
TCGGGTTTTGGGGCGGTAGGCAACCCCTGCCGTCGGTGGCTTCGGTTTTG
GCTTCGGTGCTCAGGCAACAGCGGCAGCGACAGCGACAGAGGAAGCGACG
GGTGGGGATTTCGTTTCCTCGGCCCCTCCGCCCCCCCTCGAGGCCAAGCC
CGCCGTGGCTCAGGTCGAGGGCGGCGGAGTGGGTGCCGTTAAGTTCGCCA
TCGAGAAGCCGGCCACCGTAAAGGGAGATTATTTTTTACGTGGCTATGCA
TATAGCACGAAAGAGTGAGGCAGGTTTGACGAGGAGGTATACTGCTGTTG
AGATCATTCAGGGCGGACATGGGTTTGTTATGTGCTTCCTGCGCAAAGCG
CGGTTCCGCGGAGGGTTCGCAATATGTACGTCGAAAGCATTGATTGTTGG
TGGCCCGAGTACGAGGAAATCGGGGTCGGAAAGCGGGCAATTTCATGGGT
CGGGGACACGGCTGTGGTAGCTTTTCTTGCATCCTTTAGGTTCGTACCCT
GCATGTCTTGGTGCGGACACTGGTTCTCGAGCATGTAAAAGGTTGGCTCA
GACAGCCATGGCAATGCTCAAGATCTGTGTGCCAAGCTCGTCGCCGCCAT
ACTCTCGTTAGCCTGCTGCTGCTGCT
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protein sequence of EsuBft1076_4a-0001

>EsuBft1076_4 ID=EsuBft1076_4|Name=EsuBft1076_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=56bp
MPAPIRRKSLSSLDAPVKRATVYKNRAEITRVVSFSPTDGSRWGRPAQGC
SMRCRS
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mRNA from alignment at Scaffold_211:87566..93465-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1076_4a-0001 ID=EsuBft1076_4a-0001|Name=EsuBft1076_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5900bp|location=Sequence derived from alignment at Scaffold_211:87566..93465- (Ectocarpus subulatus male Bft15b)
TAGTCACAGAACAGGGAATCCCAGAATCAACGGTGCTGTTGTCGACCAAG
ACCCCCTCTATACAAGGCCATGGCTAGCAGCACTTCTCCCACCGTGCCCA
ATGCCTGCTCCAATCCGCAGAAAGTCATTGTCAAGCCTCGACGCACCCGT
GAAGAGGGCCACCGTCTACAAGAATAGGGCCGAAATCACTCGAGTCGTCT
CCTTCTCTCCCACCGATGGCTCCCGATGGGGTAGGCCTGCACAAGGTAAG
CCTCCCACTGCCGTCGGTCTTGCCGTGTGCTGGTAGGTGAAGGGGAGGTG
GAGGAGTGAGCCATTTCACGATACTCGCAAAAGATTATTTCTCCCTATCT
GTTTCTGCCCGTGCGTGTTCCACAGACAGGCGATCCAACACACACCATCA
TGAATGCATCCCTCCGCATGTAGTCCTTCAAGTCGATCTTGATGTTGACC
TGAGACAAGGTTGCGAACAACATACCTAAGTACTCCGTATTAGTTACCAG
GGAGCACTAAACCATCACACTAGCTGTATCATGAGCACACAAGACACATG
ATGACTGGGTGGGGTTCGTTTTCATATACAGCAGCAGTTGGGGCTTGTCA
TGTCGCGAAGTCTACAAGAGAGTTGCAGAACTTTTTTTTGGGGTCAGACA
AATTGCTGGACAGCCGGACAAACCAAGAGCACAATAGTGTTTTTCTTATC
ATGTTACCGCAGTGTACTCCGAAGTAAATATTTTAGCGGGGCATCATTTT
CTTTGGTCTGAGACGTCCCTCTTCCTGCCCACCGCTCAGATAATACACCC
CACCACGTTCGTATCTGAGGCATGGGTTGCTGTTCAGCTGCCTCAGATTC
TCAGCGCGGAAGCAGAGTACTACTGTAGTAAACCACAAAATATTGCATCG
CATCGTCCGAGCGTCCTGTCACCCCCGCTGAGCAGACCTGCTCCTCCGAC
GCGGGTGGTGGGTGTCAACATGTAAGTATGTGGTGGGCACTGTGGAACCG
GCAAGGAAGGGTGGGATGATACAAGGTTTAACAGAACAGACCACAACTCT
TCTTGCCTAAACCAATTGAGAAGAACACCCAGACCATCAGCTGTAGTTCA
CACGAACTGCTGGGTGGCCCAAAAGTTGCCTTTTGTTTTTCTCTACAGCG
CCACCTCATCTAGACAGCTGTTGCGGTTTGGAATGCTGCTTTAAAATCCC
TGTGGGAGGGTACTTCTAGGTTGAAGCTGCTGCTGCAGCTACTGCTACAT
CTTGCTGCTGCTGAACCGCCTGATTCTTTTACGTCAAAGCTGCTGCTACT
GCTGCTGCTACTACTGCTCCAAATTTGCTGCTGCTGAATTGCCGCCTCTC
TCTCTCTCTCTTGATTGAAATAAGAAGCTGACCGGCTGAGAGTTTGCTTG
CAAGAAGCCTTGAGGGTGTTTCTCTGAGGTGACAATACCACCGTAAGATG
CTCCTGGCACCTTGGATGATAAATAGCAGGAGCCAACCAAGCAACTCTCT
CTTGTGTAGACAAGGGAAGAAGCAGCGTGGGAACGGCGCGCTCGAATGTT
TCAGCCAATCAACGGGGGGCAGGAGCCACGTGATGCCGAAAAATATCTGA
GTCCCCTCACGATCTTTTAGATGCCAATTTTTGTCTGGGCGATTTTATTT
GAGCAAAACGAAACATTTCGATACCTCCACCCGCCTCTTCTCACAGCCAA
GACAACATTCCGACGCCCAAACCATTACCCAAAACAGGCAACATGGCGGG
TTCTTAAGCGGGTTACTTGCGTTGTGAAACTCTCGGCAACAACATTGATA
CAAGGAGAGGACTTGATGCAACAGCTACGTGCGTGCTGGCACGCTTAGAT
GTGTCGCAAGGGCGGCGCGGTCGACGGCTGCAGCTGCACAGCAGTCCGCC
AGCTGAGTCCACGCCACCCAAGATGCTCCACGTGTCGTTACAAACCCAAT
TAATCCCCCGAACTGTGGTCGCTTTATCGCTCAAGGCAGCTGGGGTTTTG
AATGATGTGGACCCTACGTTTGAAGCCTTTTCTGGTCTCATCTTCAGGAG
AAACCGACGTTGTGCTCCCGGAAGAGAGAAGGCAGCAGATACCTAGCCAT
GCTGCGAGGTGGTTGAATACAACGGCAGCGTCCGCAGAAGCGCTAGTATA
CCAGCACAACATTTGGAAGTATATGCTGGCAAAGTTCCGTGTTGGTTGCG
ACCTCGGTTCCATCTGTTTTTTTTGTTGAAGATTCTATTTATTGTTTCCT
TGGTGTACGCTTTATGATCGCGTTCTTGGGTGTACTGCTTTGCAAGGCAG
GATCACGAACGACGAGGAGTTGTTCATCAGAGACTCCTTTCAGTTGTCGG
CCCATCGACTACAGTCGTGACCAAATCAATGACGTAGCAACGGATTGAAA
CACATAATATGGAACATGAGGAAGACGCATAGAAAAGGGAGGGTGGGGGG
GGCAGGAAGCGAGGCAAAGACCAGAGAGGCGGAGAGAAGGAGAGAAGGAG
AGATACTACTACTGCCGCACATACCCAGTCACCCGAACCGACGGAATCGG
AGAGTGATAGGGAGAGAGTTGAAGGGACCTTGAAATGTGTGTGAGTCTGT
GCGACTAGGCAGGGAAGAGAGAAGAGGGTCGCACACTATTTGCTTCTACT
TTTCGTACTTGGTAGAACACGCTGTACGGCATCTGGACCTGTCTCTACCT
CTTTCTGTTTGATTGTCCGGTGTGCGGCTTGTGCCCTGCTTATCCATGAT
GAGATGCAATGCGGCCTCTGCGTACCCTTCTCCTTTTTCAGTTTCATTAC
ATTAGTGCAATACCCAAGGTGAAGTAGACGCGTGATTCAACACTGTACTC
GGAACACGGAATCACCAGCAGTGCACAGCCTTAAGAAAACGCCGCCCCTG
CCCTCCCCGCCACACCGCACACCCACCGTGTCGTATTTGCACTAACCTTC
CGAAGGGTGTTCGATGCGATGTCGAAGCTAGACAGCGAGCACACCGCCGC
TCTGACGAAGCACGGCAGTGCTGCCATGGCTGGGCGTGCAAGGGCGTCTG
CGTCGCCAAAGGGAATAATTTTTTTTTGGTTCTCCGACAAGCTGAAGCCG
CAGGCGAAGGCTAAGGTGGTCGTCACCGTTGATGTGGAGGAGCTGCTGTG
CCCCATCGAGTTGGAGGTATGCATACACATGTTGGAACGCGGGTGAGATT
TTTTCTCCACGCTGGCGGACGTCTTTGAATACGTGCATTACGAGCTTGGG
GTTGAGACGGAGGGGGGAAGAGACAGAGAGCGAGGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGG
GGGGGGGGACCGCGGGGAGAGATGGAAAGAGAAGAAGCAAAGAGATGCCG
CATGCGTACGAAGCGGACGCTGGGGTTTAACTAGGGGCAGGCGGTCGCTG
ACCCGCAAACTGAATCACACGTGCAGCCTTGTGGTTGCAGCAGGTTTGTA
TTCGCGAAGCAGGCACTGGAACAGCGTGGCGTTGATACGAAGACAGGCAG
GTTCCCGAAAGGACATGCGGCACAAGAACGCGGCTGGCAAGCGAATTTCT
TTAGGTCGTTCCGATGCGATTCTGCGGGAACGTTCATGGGATTCGACGTT
CCCCCCTGCCTCGATCTTGCTCTTGTTCTCATCCCCGCTTTTCCTCGCGG
TTGCTCTGGATCCCCATGTGCCACCCGCTATCTTTTTTCGTCGGACACCC
GTCTCCCTGAAACCGATTTCGACTGAGTGAGTTGACTCGAAGTGTTTTAC
TGTTTGACGCAGGTGTCCTACATGAGTGAACGTGCATCGTGGTCGCCATT
GTACACCCTGCGCGTGGACGCAATGACGGGTTGCATGTCGTGCACGTTCT
TCGGAAGGGTGTCCCAAAGCACCAACGAGGACTGGGAAGGTGCGCTCAGC
TCGTCAAACCCGCGACGTTCTTCTCAGTACAGCACGCCCCCTCGCTGTAG
CTTCATGGCCAAGCTTCCTTTTGGATAGGCTATACTTTTTTGCGATGGGC
ATTGCGATCCCCGCCTGATGTCTTTTCCTGTTGTTAAGTCTATCCCCCTC
TGCTCAAAACAGTACAATAGAGGCCGTTTGCTTTGTGGCTCGACGAATGG
TCGCTCCGAAGCGGTGGAGCAGTCCTCAACCTATCTTTGTACTCTGTCCA
TTTCCCCCCAACCGAGTCGTTGACGGGTTGCTATTCGTCGAGGAGACAAG
CGTAACCCCTTCTCTCTGTGGAAAACCTTCTTCGTTTCTATCGAGTCTAC
TCCTAAACAAAACCGTCCTGGTGACAAGTGAAATCCCGTCGGCGTGTTCT
ACGTATCTAGCAACGGATCTGATCCTGGCTGTCGGCTTTTCCTCGACAGT
TACTCGGCGCAGCATCCATAGTGCCTACAAGTATGACCCTGAACCATCAA
ACTACGCCCGTGGCACATGCCCCGTGTACTCCATCTTTCCGATCCCGTCT
TTGCCCCGCAGGCGTGGCGTTAAAGCTGTCTACGGCCGAGCCCTCCGCCC
GCAGTACCCCATCGTTCCTGACAACGAAGACGGTGTCCCTCAAGTCTACC
GCCGCTGCCCCAATACAGCTGAGGAGAGTCTTGACTCGGGTGTGTTTCGT
GCTCGCCCAAGCCGTTTCAGTTCGAAGCTGCCATTGTGAGTTACTCTGGC
TTGGAGGAAAGCTCGGGTGCCTTCGTTGTTTTGAGTCCTCGCTTGACTCA
TCGGGGGAGACACAGAGGGTCATATCAGCGGTTTAGCGCTGCCGTCACCG
CCGCGTGGGCAGGAACCTAAACTCTCCCAGCTAGACCAGGTATCATCGAT
GCCGTGCTAGCACTCTTAGCTTCGTGGCCGCCAACATGCGACCACGCACA
CACACCACCGCTAGCGTCGTACGAGGTGCGGCGTTACGAGCAAATGCGCG
TGGCAAGTTCGCGCAACCCTTACCGTTGTCGAATTCATTTGCGGATGGCA
GCGCAAATTAATCACTCCGGGAACATCGCATTCGCGCCCACCGTTGCCCT
TCGCTCCCCCCCGCGTGTCGGCTCGAGACAGTCGCCGCCGCCTCCGCCTT
CCCACGCCAGTGCGCACTTGTTTGGCGTGACATCTGTACCTGGTGCCGGC
AAGACGTTTGACGCAGCAGCGCCGCAGGGTGTAGGCTTTTCGTTCGGTGC
TATGCTACCCCGGCGTCGGCGGTGTCGGGTTTTGGGGCGGTAGGCAACCC
CTGCCGTCGGTGGCTTCGGTTTTGGCTTCGGTGCTCAGGCAACAGCGGCA
GCGACAGCGACAGAGGAAGCGACGGGTGGGGATTTCGTTTCCTCGGCCCC
TCCGCCCCCCCTCGAGGCCAAGCCCGCCGTGGCTCAGGTCGAGGGCGGCG
GAGTGGGTGCCGTTAAGTTCGCCATCGAGAAGCCGGCCACCGTAAAGGGA
GATTATTTTTTACGTGGCTATGCATATAGCACGAAAGAGTGAGGCAGGTT
TGACGAGGAGGTATACTGCTGTTGAGATCATTCAGGGCGGACATGGGTTT
GTTATGTGCTTCCTGCGCAAAGCGCGGTTCCGCGGAGGGTTCGCAATATG
TACGTCGAAAGCATTGATTGTTGGTGGCCCGAGTACGAGGAAATCGGGGT
CGGAAAGCGGGCAATTTCATGGGTCGGGGACACGGCTGTGGTAGCTTTTC
TTGCATCCTTTAGGTTCGTACCCTGCATGTCTTGGTGCGGACACTGGTTC
TCGAGCATGTAAAAGGTTGGCTCAGACAGCCATGGCAATGCTCAAGATCT
GTGTGCCAAGCTCGTCGCCGCCATACTCTCGTTAGCCTGCTGCTGCTGCT
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Coding sequence (CDS) from alignment at Scaffold_211:87566..93465-

>EsuBft1076_4a-0001 ID=EsuBft1076_4a-0001|Name=EsuBft1076_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=171bp|location=Sequence derived from alignment at Scaffold_211:87566..93465- (Ectocarpus subulatus male Bft15b)
ATGCCTGCTCCAATCCGCAGAAAGTCATTGTCAAGCCTCGACGCACCCGT
GAAGAGGGCCACCGTCTACAAGAATAGGGCCGAAATCACTCGAGTCGTCT
CCTTCTCTCCCACCGATGGCTCCCGATGGGGTAGGCCTGCACAAGGGTGT
TCGATGCGATGTCGAAGCTAG
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