EsuBft105_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft105_6a-0001
Unique NameEsuBft105_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_100contigScaffold_100:614399..619344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft105_6
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Length129
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft105_6aEsuBft105_6aEctocarpus subulatus male Bft15bgeneScaffold_100 614399..619344 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft105_6a-0001EsuBft105_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_100 614469..618846 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft105_6a-0001-exonagat-exon-19271Ectocarpus subulatus male Bft15bexonScaffold_100 614399..614477 +
EsuBft105_6a-0001-exonagat-exon-19270Ectocarpus subulatus male Bft15bexonScaffold_100 614704..614883 +
EsuBft105_6a-0001-exonagat-exon-19269Ectocarpus subulatus male Bft15bexonScaffold_100 616810..616971 +
EsuBft105_6a-0001-exonEsuBft105_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_100 618040..618348 +
EsuBft105_6a-0001-exonagat-exon-19268Ectocarpus subulatus male Bft15bexonScaffold_100 618781..619344 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft105_6a-0001-exonagat-five_prime_utr-370Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_100 614399..614468 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft105_6a-0001-cdsEsuBft105_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_100 614469..614477 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft105_6a-0001-exonagat-three_prime_utr-597Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_100 618847..619344 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft105_6a-0001 ID=EsuBft105_6a-0001|Name=EsuBft105_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1294bp|location=Sequence derived from alignment at Scaffold_100:614399..619344+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTGTTGAGGGTGGCAAGCAAAGAAGGCAGGTAGAGGAAGGTTCTCAGACC
GTTGAAGTCACGTGACACAGATGGAAATAGACGGCCGACAGGGCACGAGG
CGGCCTGCTCGTCAGACCGCCGCCGCCCGTGTGCTCGTTTCCGCCGAAGC
TCGCCAAAGGGCGGCGGCGGCGAAGGCGGCCGAACGTCGAGAGCGGGCGG
CGGCGGAAGCCCGCGGAAAGCTTCTCGGCCAGGAGGAGGCTGACCAGGCG
GCCTTAGAGGGTGCTCTAGAGGCAGCAAGGCGGTACCGGGAAGCGGTCGA
GCGAGGACAAGCGCGGGTCGAGGACGCAGAGGCGGACAGGCGTCGAATGC
AAGCATCAGCGGCAAAGCTGCTGGAGAGGGTGGACGAACTCACGAGGAAG
GCTGAGGAAGAAGCCATGAAGGGTGCCCGGGAGGCCTCGTCGGCAGAAAG
CGAGCGCGCGGCTCTCTCCCTCGCGGCTTCCATGGCAGAAGCCAGGGCTA
GGGAGATGATGGTCATCCTGGACGAGCGAGAGAGGGAGGCCGCCAAGCTA
AGGCGGGCGCTGGCTGCCAAGGACGCAAAGCTCAAGGAAAGGCTTCTCCG
CCGTCGTGCATCGGCACCTGTCGACGCGACGGAGGTTTCCCCGTCACACC
AAGGAGGAACGGCACCGCTTCTGTCTGGAGCGGGGGTTGTTGCTGCTACT
GATGCTCCATTGGCAGCGTGCGATATATATGAGCTGAAGGAGAGCATCGC
CCTGCTACAGAAGAAGGTCGAATCGTCCGCGAAAGGCGTTTCGTAGCAAC
AGGTTGCTCGGTCTCCCTGCTCGGCGTCCCGATTTTCACGGGATATGTGT
TGCCGCCTTAGTAGGGTGTTCGAGAGTTCAGTGATGACTGCCTTTTGGAG
ATTTATCTACATTTCCCTAATTTTTGGCATGATCGTCGGTTCGAGATCGG
CGGTTGGTTGGTCTTGCTCGACCTAATACGTGAGTTTAGCCCGATGATGG
TCAGGGGGTCCAAGTATTTTCCATGACAGAGATAAACGTGTTACCCGCTT
CCGAGTCGAACTCTCCTCTCCTTCGTACCTCCGAGCGCCTTCTCCTCTTC
TTGAAAAAATATATTCACGTGGCCCCGGATGGACCGTCTTTTGTAGAAAA
CGGGACGGTAGTTATTGGGAGGTAGACACTGCAAGCGATGCGATGGCAAG
GAATGCCATGACCAAGGAGTGAATGCTGGTCCCTTTTGCCGTGCAATGGA
ACTTTCGTCTTTTCCCGCGCTTGTCAGGGAGACTCCCTGGCTGA
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protein sequence of EsuBft105_6a-0001

>EsuBft105_6 ID=EsuBft105_6|Name=EsuBft105_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=241bp
MEIDGRQGTRRPARQTAAARVLVSAEARQRAAAAKAAERRERAAAEARGK
LLGQEEADQAALEGALEAARRYREAVERGQARVEDAEADRRRMQASAAKL
LERVDELTRKAEEEAMKGAREASSAESERAALSLAASMAEARAREMMVIL
DEREREAAKLRRALAAKDAKLKERLLRRRASAPVDATEVSPSHQGGTAPL
LSGAGVVAATDAPLAACDIYELKESIALLQKKVESSAKGVS
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mRNA from alignment at Scaffold_100:614399..619344+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft105_6a-0001 ID=EsuBft105_6a-0001|Name=EsuBft105_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4946bp|location=Sequence derived from alignment at Scaffold_100:614399..619344+ (Ectocarpus subulatus male Bft15b)
CTGTTGAGGGTGGCAAGCAAAGAAGGCAGGTAGAGGAAGGTTCTCAGACC
GTTGAAGTCACGTGACACAGATGGAAATAGTATTCAACTTGTCTCACACG
TAGGGTTAGGAATACGGATAGTGTCGAGTGCACGATAGGGCCGGCCAAAC
CCCTGGTACTAGTGTACTAGTGTACTAGTACTAGTGTACTAGTGTACTAG
TGCACTAGTGTACTAGTGTACTAGTGCACTAGTACTAGTGTACTAGTGTA
CTAGTGTACGGCTTCATGCGGAACCACCACTGCCTGCTGTGCCGAGGACT
CGCAGGACGGCCGACAGGGCACGAGGCGGCCTGCTCGTCAGACCGCCGCC
GCCCGTGTGCTCGTTTCCGCCGAAGCTCGCCAAAGGGCGGCGGCGGCGAA
GGCGGCCGAACGTCGAGAGCGGGCGGCGGCGGAAGCCCGCGGAAAGCTTC
TCGGCCAGGAGGAGGCTGACCAGGCGGCCTTAGAGGTGGGGGATGCTGGC
CCCCTCGGAGTATTGTGGTAGTTTAGTGTATATTGATGATGCCGTTTCTA
CTCCACATTCGTTTTGGGGTGTTTTTATCTTTTTGGCCAGGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTTCACATTG
AAAACCGTTCCGATTTTTCTCTACCCAGTACCTCCATATGTCCGCACTGA
TCCAATACTTGACGCGGTCGATTCCCGTGGTCACAGGCTAACTTACCCTA
AAAAGGTACACTCAAATAAGCTAGCCCCGAGGGGGTCCGAAAGTCAATAG
AAACCAACGACAGAAATTCTGGAGTGCTCCGCTCCCTCTGCGCGCAATGC
GAGGTAACAACTGAAACTAAGAGTCAGGATCACGGCCCAGAGAGAAAGAG
GTACACCCTCTTGGTTCAATCCTGGTACTTCACAACGCAAGCCGAGACAA
GGCCATCTGACACAGAAAAAGAGAGAAAAGAGAGAGAAAGAGAGAGAAAA
AGAGGAAAAATAAAGGAAGCAGAAAGGAAAGAGAAAAGAAAACAAAAAAG
AGCGAGGACAAAAAGGGACCAAGCCGTAACAAGAAATAAGAGATAGAAAA
AGGCACACGGTGAAGAGACCACTACCGAACATGCAAACACGCAAACATGG
CCACCAACCAGCGATACATTACAATGGTACGTCATCACTAGTGGGGCGTT
GGTGCAAAAGGTGCAGCGTTGGGGGGGGGGAATTGGACAAAAGAAGTTCA
ATCTGGCACATATCGCGCCACTCGGTCCGTCTCTTCTCGTTTGCTTTCTT
CCCTCGCCGTTTCGTCCGTCTCCTGCCCCCCTCCCGCCCCATTGGTTGTT
GGCTTGTGGTCTCGTTTGAGCGCCCGTTGTCGGCTGGCCTCCTCTTCCTT
CTTGTGCCAGGAGGTCATGAACCTCTCAGCTCCCTGCAGCACCGCCGCAT
GCCAGGGTAATCCCCCCTCCACCTTCGCGGCTTCCGTCCACTTTAACTTC
GGTACCGTGTCTTTCGGCACCGGGATTCCGAGACAACATGGATCGGTTTT
CGTAGATCCGTGGTCGGCCCCGAATGCCTTCAGGTCGTCGTGCACACACT
TCGGCCAGTTCTGTTTCTTTCCCCCCCCCACGTCGCTTCTCCCCCCTATC
GGTAGAACATACCGGATAGCTCTGTCGATAAACTAGTTTGTTTTGAAAGC
GGGTAAGAACGGTAGGTGTGTTTCCCCTCGCCTCAGCTTTTTTGCAATCC
GGCGAGGCATGGACAGAGGTTTTATTGTCCCACGAGAAACGAAACTTCAA
GCTCTTTTCAATCCGGTGGTGGCGGTACGATAATCGATTGGTTCTGTATG
TACCACGCCCGCACCAATCGGCAGCCGTTTACGTGTACAGTAGTTGTCCC
TGTATCAGGCCGCATGAGTATGGCCGGTCGCCCTATAGATGTGTGAAATC
CAGTAGACCAGGTGAAATATTCAAGTTGTGGCATGCAATGACGGTGCCCG
GTGTAATGCCAGTCAAATCCCTTCGCACTATGCAGCCTACACTGTAAAAC
GTTCAACCCGACTCTAGCGGTACGCCAACCCGCATGTGCATTGAAACCGA
TCACGTAGCATGCTCCTAGCTTTGACTACCGTGGTGTGATTCACCGTGTG
CCTATCCCATCCCATGTCGTCCTCGCATTCGCGATTGGTTGGTGCTCCCG
CGGAGGCAAGGACTGGCAAGAAAAATGATATTTTCGCGATGTCCCACTTC
CTGTGTATTCCACGCTGCATCAAAGCATTCACCTTCCGCGTGGACCCCTC
CTATCTCACAAGCCCGTCCTCTAGGGTGCTATGGACAGCTCTACTGCACG
CCGCCGTCCATATTCCGGGAGTTCGAATTATCCACCTGATGTTTTTTTTG
CGTCCCCGAAGGGTGCTCTAGAGGCAGCAAGGCGGTACCGGGAAGCGGTC
GAGCGAGGACAAGCGCGGGTCGAGGACGCAGAGGCGGACAGGCGTCGAAT
GCAAGCATCAGCGGCAAAGCTGCTGGAGAGGGTGGACGAACTCACGAGGA
AGGCTGAGGAAGAAGCCATGAAGGTACCGCCGTCCAGCCTACCATTTGGT
GTGTGAATGATGTAATCCAACAGAAGAAGCCATGAAGGTACCGCCGTCCA
GCCTACCATTTGGTGTGTGAATGATGTAATCCAACAGAAGAAGCCATGAA
GGTACCGCCGTCCAGCCTACCATTTGGTGTGTGAATGATGTGATCCAACA
GATTCTTCGAATATTGGGGTTCATGCCTTTGACCGGACTGCGTCGAGAGA
ACGGGGTCCGGCCGGATGAGCCCACGAAGAAAAGGAGCGTGAAGCGACCG
CAATAACTTCCGATCTTTGCCGACAAGACTATCCGCTTTGCGGACATCCG
CGATTTTCTTTTGAAGACGGGTCCATTTCGCTGGGATGAGTCCCGTCAAT
AGGCTTTGCATTCTGCGCGACACCATGCGCCTTGAAATAATGGTGGCCTT
GAAGCGGGGACGACTCGAGTTTTCAGTTGTGGATGCTTCGACGTTGGGGC
GTTGTTCGTGACCCGAAGGTGTGTGCAAGGGAAGGACACTTCTTACGGGG
ACTGTTAATTTGTAAATGAGGGGTCGGCCCAACATACCGGGGAGGAAGCC
TCGCGGGAATCAGGAAACCACTCGCGCATCGCCAGCTCTCTCTCTCTCTC
TGGTCTCAACGCGGCATGATGCTTAAAAATTCACACAAGATGAGATGGTT
ATTGGAAAACATACATACAGTCACAGAAATACTACCCATATATATGTTGA
TATGCCGGGATGAAAAGGGGTGGGTAGAAAAAGGACGCCGACGAACACAG
CCTACAAACTCGTGTGTGAAGCGGGTGCCCGGGCTGGAAGGCACAACAAC
CGATACTTTCAGTCGCGAACGCGCAAGTCTGCTATTTTCATGGCGGACGA
AGTGACGCGGGCATAGAAAAAGGTCGGGGAAGACAGAATCGGCTCTTTCA
AGCGTGTGGACGGAATAATATAGAATCTCGAAGGGCAGCCTTCCAATCAC
CAGCCAAGATATCTACTTGTTTCCATATCGCAACGCGCCTGTTACTTGAC
GCTCTAGCTTCTCGTCACCCAATCGCCTGGCCAATGACAAGGGTGCCCGG
GAGGCCTCGTCGGCAGAAAGCGAGCGCGCGGCTCTCTCCCTCGCGGCTTC
CATGGCAGAAGCCAGGGCTAGGGAGATGATGGTCATCCTGGACGAGCGAG
AGAGGGAGGCCGCCAAGCTAAGGCGGGCGCTGGCTGCCAAGGACGCAAAG
CTCAAGGAAAGGCTTCTCCGCCGTCGTGCATCGGCACCTGTCGACGCGAC
GGAGGTTTCCCCGTCACACCAAGGAGGAACGGCACCGCTTCTGTCTGGAG
CGGGGGTTGTTGCTGCTACTGATGCTCCATTGGCAGCGTGCGATATATAT
GTGAGGAGTTTTCTTCGTCAGGACTCTGTGGTGTGACGTTAGGGGTTGGT
GGATATAGGCACGTCGGCTGGTTAGCATACGAGACGAGGGGAATGGAGCC
ATGCTTGCCACAGTTGTCGACCTGCGCCAGTCGAGACGACTACTACATGA
AGACGCCAGCTTGAGAGTTCGAAGGCGCATATGTCCATGGCCGCGATCGG
CTCGATAACCGCAAGCTTATATTGCACTGCGGGTCTCATTTTCTCTCTCT
GGTGGATCAAGCGATCGATATTTAGGTCATCCTCAAAAATGTTTGCACAG
TTGGATCTTCACACGCTTTGGTATCCCGACGCTTATTCACCCAACACCCC
CCCGTGTTTTCTGACTCATGCCTTTCTTTCGCGCACGAACTTTCTATTGT
TCCTTTGTACTACCCAAACCTCTACGTCTCAGGAGCTGAAGGAGAGCATC
GCCCTGCTACAGAAGAAGGTCGAATCGTCCGCGAAAGGCGTTTCGTAGCA
ACAGGTTGCTCGGTCTCCCTGCTCGGCGTCCCGATTTTCACGGGATATGT
GTTGCCGCCTTAGTAGGGTGTTCGAGAGTTCAGTGATGACTGCCTTTTGG
AGATTTATCTACATTTCCCTAATTTTTGGCATGATCGTCGGTTCGAGATC
GGCGGTTGGTTGGTCTTGCTCGACCTAATACGTGAGTTTAGCCCGATGAT
GGTCAGGGGGTCCAAGTATTTTCCATGACAGAGATAAACGTGTTACCCGC
TTCCGAGTCGAACTCTCCTCTCCTTCGTACCTCCGAGCGCCTTCTCCTCT
TCTTGAAAAAATATATTCACGTGGCCCCGGATGGACCGTCTTTTGTAGAA
AACGGGACGGTAGTTATTGGGAGGTAGACACTGCAAGCGATGCGATGGCA
AGGAATGCCATGACCAAGGAGTGAATGCTGGTCCCTTTTGCCGTGCAATG
GAACTTTCGTCTTTTCCCGCGCTTGTCAGGGAGACTCCCTGGCTGA
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Coding sequence (CDS) from alignment at Scaffold_100:614399..619344+

>EsuBft105_6a-0001 ID=EsuBft105_6a-0001|Name=EsuBft105_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=726bp|location=Sequence derived from alignment at Scaffold_100:614399..619344+ (Ectocarpus subulatus male Bft15b)
ATGGAAATAGACGGCCGACAGGGCACGAGGCGGCCTGCTCGTCAGACCGC
CGCCGCCCGTGTGCTCGTTTCCGCCGAAGCTCGCCAAAGGGCGGCGGCGG
CGAAGGCGGCCGAACGTCGAGAGCGGGCGGCGGCGGAAGCCCGCGGAAAG
CTTCTCGGCCAGGAGGAGGCTGACCAGGCGGCCTTAGAGGGTGCTCTAGA
GGCAGCAAGGCGGTACCGGGAAGCGGTCGAGCGAGGACAAGCGCGGGTCG
AGGACGCAGAGGCGGACAGGCGTCGAATGCAAGCATCAGCGGCAAAGCTG
CTGGAGAGGGTGGACGAACTCACGAGGAAGGCTGAGGAAGAAGCCATGAA
GGGTGCCCGGGAGGCCTCGTCGGCAGAAAGCGAGCGCGCGGCTCTCTCCC
TCGCGGCTTCCATGGCAGAAGCCAGGGCTAGGGAGATGATGGTCATCCTG
GACGAGCGAGAGAGGGAGGCCGCCAAGCTAAGGCGGGCGCTGGCTGCCAA
GGACGCAAAGCTCAAGGAAAGGCTTCTCCGCCGTCGTGCATCGGCACCTG
TCGACGCGACGGAGGTTTCCCCGTCACACCAAGGAGGAACGGCACCGCTT
CTGTCTGGAGCGGGGGTTGTTGCTGCTACTGATGCTCCATTGGCAGCGTG
CGATATATATGAGCTGAAGGAGAGCATCGCCCTGCTACAGAAGAAGGTCG
AATCGTCCGCGAAAGGCGTTTCGTAG
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