EsuBft105_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft105_4a-0001
Unique NameEsuBft105_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_100contigScaffold_100:627492..630309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FIV2
ProteomeIdEsuBft105_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length68
Hectar predicted targeting categoryother localisation
Evalue2.38e-29
EggNOG OGsKOG4373@1|root,KOG4373@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Preferred nameWRN
KEGG koko:K10900,ko:K20777
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
EC3.1.11.1,3.6.4.12
Description3'-5' exonuclease activity
COG categoryC
BRITEko00000,ko01000,ko03032,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft105_4aEsuBft105_4aEctocarpus subulatus male Bft15bgeneScaffold_100 627492..630309 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft105_4a-0001EsuBft105_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_100 627657..630309 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft105_4a-0001-exonagat-exon-19265Ectocarpus subulatus male Bft15bexonScaffold_100 627492..627710 -
EsuBft105_4a-0001-exonagat-exon-19264Ectocarpus subulatus male Bft15bexonScaffold_100 629444..629681 -
EsuBft105_4a-0001-exonagat-exon-19266Ectocarpus subulatus male Bft15bexonScaffold_100 629811..629880 -
EsuBft105_4a-0001-exonEsuBft105_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_100 630156..630309 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft105_4a-0001-exonagat-three_prime_utr-594Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_100 627492..627656 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft105_4a-0001-cdsEsuBft105_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_100 627657..627710 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft105_4a-0001 ID=EsuBft105_4a-0001|Name=EsuBft105_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=681bp|location=Sequence derived from alignment at Scaffold_100:627492..630309- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGGATCATTTCCGTACCGTCAAGAAGAACATCGACGCCAACATTCT
CCATCACAGCGGCGACGTGGCGGCACCTAGGGGAGGCCGTGGAAAGTTCC
CCTACAGCAGCCCCCTCATTCTCCCCAAGTGTGCTACGATGCAGAACACC
TCAGATGGATGGAATCCCAAGGGGCCACGGCGGGTGTTCATGGAGGAAGA
CGTGGGGTACATCATAGGATTCCGGTACAAGTGCGAGCGGTGTGTTGAAT
ACAACGGGATCGTGGAGGAGTCGGAGCAGAGCCCTACCAGTTTCAACGCG
TGGGATGTCGGATGCCTGGATCGCCTTCCTGACTACGTGTCGAAGGAATT
CCCTTTCATTCTGACTCATCGGTCGGGTATCGACATTCGTCTTGTCGACC
GGCTCGCAGACGACCTGGCCCATGGGAAGGGCTTCTCCGCCGCTGCCAAG
TACATCCGCCAGACAGCACTTCAGACAGCAGTATGCTGTAGTCGGCAATC
TTCCGTTTTGGTATAGAGTGGGACAGGGAGGGGGTGATGCTTTTGCTGTA
GTCGAACGGTGGGACGGACGTGCAGTTCAGTTTTTGGGCACGCATACGGT
GCTGCAGGGATTTTTAGGTGTACCTCTTCGGGCTCGTGGATACCTTTTTC
TCGTTATATGTGTGCGTGTTCTTTAGATCCT
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protein sequence of EsuBft105_4a-0001

>EsuBft105_4 ID=EsuBft105_4|Name=EsuBft105_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=171bp
MRDHFRTVKKNIDANILHHSGDVAAPRGGRGKFPYSSPLILPKCATMQNT
SDGWNPKGPRRVFMEEDVGYIIGFRYKCERCVEYNGIVEESEQSPTSFNA
WDVGCLDRLPDYVSKEFPFILTHRSGIDIRLVDRLADDLAHGKGFSAAAK
YIRQTALQTAVCCSRQSSVLV
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mRNA from alignment at Scaffold_100:627492..630309-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft105_4a-0001 ID=EsuBft105_4a-0001|Name=EsuBft105_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2818bp|location=Sequence derived from alignment at Scaffold_100:627492..630309- (Ectocarpus subulatus male Bft15b)
ATGCGGGATCATTTCCGTACCGTCAAGAAGAACATCGACGCCAACATTCT
CCATCACAGCGGCGACGTGGCGGCACCTAGGGGAGGCCGTGGAAAGTTCC
CCTACAGCAGCCCCCTCATTCTCCCCAAGTGTGCTACGATGCAGAACACC
TCAGGTATGCACCCGACGTCCGGGTTTCCTTTGCTGCTTTGAACAGCAGT
TTTGTACTCCTGGCGATTGACCGCTTTCCGTCCATAAGCTACGCGAACTC
GGTTTTCGTTTCTCATGCCTCCATGACCGCTGTCCACTACGTTTTTGCGC
AGGATTGCCGAAACTTTCTCCGTTCCTTCTGAAGCCACTGCTTGTTCGCG
TGGATACCCGAGTATTTGTTCCCGGAGCTAGCGCTGGCGGGAATTGCGTG
TCCAAGGTGCGGGAAAAGGGGTTCGCCAGATGGATGGAATCCCAAGGGGC
CACGGCGGGTGTTCATGGAGGAAGACGTGGGGTACATCATAGGATTCCGG
TAAGCCCAGTCAGCGTGAGGTTTTTTGGTGGTACGCCGAGTATGTGGTGT
GTTACAATTTGTAAACCGCGCGGATCAGTTCGCCGCCTGTTTGACTGTCG
GCTGTCCCGCTTGTTTGTTCGCAGACAGGTACAAGTGCGAGCGGTGTGTT
GAATACAACGGGATCGTGGAGGAGTCGGAGCAGAGCCCTACCAGTTTCAA
CGCGTGGGATGTCGGATGCCTGGATCGCCTTCCTGACTACGTGTCGAAGG
AATTCCCTTTCATTCTGACTCATCGGTCGGGTATCGACATTCGTCTTGTC
GACCGGCTCGCAGACGACCTGGCCCATGGGAAGGGCTTCTCCGCCGCTGC
CAAGTACATCCGCCAGGTAAATTTTTGTACCATTCTTTCATTTGGTCAGG
GAAGTTTCGCGAAACAATGTTCCCGGTACTGTCTACGACGTGCCGTTCTG
AAACATGTTGCACCCCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTTTTTGTACAGA
CAGCACTTCAGACAGCAGTATGCTGTAGTCGGCAATCTTCCGTTTTGGTA
TAGAGTGGGACAGGGAGGGGGTGATGCTTTTGCTGTAGTCGAACGGTGGG
ACGGACGTGCAGTTCAGTTTTTGGGCACGCATACGGTGCTGCAGGGATTT
TTAGGTGTACCTCTTCGGGCTCGTGGATACCTTTTTCTCGTTATATGTGT
GCGTGTTCTTTAGATCCT
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Coding sequence (CDS) from alignment at Scaffold_100:627492..630309-

>EsuBft105_4a-0001 ID=EsuBft105_4a-0001|Name=EsuBft105_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=516bp|location=Sequence derived from alignment at Scaffold_100:627492..630309- (Ectocarpus subulatus male Bft15b)
ATGCGGGATCATTTCCGTACCGTCAAGAAGAACATCGACGCCAACATTCT
CCATCACAGCGGCGACGTGGCGGCACCTAGGGGAGGCCGTGGAAAGTTCC
CCTACAGCAGCCCCCTCATTCTCCCCAAGTGTGCTACGATGCAGAACACC
TCAGATGGATGGAATCCCAAGGGGCCACGGCGGGTGTTCATGGAGGAAGA
CGTGGGGTACATCATAGGATTCCGGTACAAGTGCGAGCGGTGTGTTGAAT
ACAACGGGATCGTGGAGGAGTCGGAGCAGAGCCCTACCAGTTTCAACGCG
TGGGATGTCGGATGCCTGGATCGCCTTCCTGACTACGTGTCGAAGGAATT
CCCTTTCATTCTGACTCATCGGTCGGGTATCGACATTCGTCTTGTCGACC
GGCTCGCAGACGACCTGGCCCATGGGAAGGGCTTCTCCGCCGCTGCCAAG
TACATCCGCCAGACAGCACTTCAGACAGCAGTATGCTGTAGTCGGCAATC
TTCCGTTTTGGTATAG
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