EsuBft105_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft105_2a-0001
Unique Name	EsuBft105_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_100	contig	Scaffold_100:645977..653574 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft105_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	4
Length	140
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft105_2a	EsuBft105_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_100 645977..653574 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft105_2a-0001	EsuBft105_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_100 646745..653225 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft105_2a-0001-exon	agat-exon-19261	Ectocarpus subulatus male Bft15b	exon	Scaffold_100 645977..646109 +
EsuBft105_2a-0001-exon	agat-exon-19259	Ectocarpus subulatus male Bft15b	exon	Scaffold_100 646704..646936 +
EsuBft105_2a-0001-exon	agat-exon-19260	Ectocarpus subulatus male Bft15b	exon	Scaffold_100 647954..648093 +
EsuBft105_2a-0001-exon	EsuBft105_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_100 649216..649401 +
EsuBft105_2a-0001-exon	agat-exon-19258	Ectocarpus subulatus male Bft15b	exon	Scaffold_100 652859..653574 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft105_2a-0001-exon	agat-five_prime_utr-367	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_100 645977..646109 +
EsuBft105_2a-0001-exon	agat-five_prime_utr-368	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_100 646704..646744 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft105_2a-0001-cds	EsuBft105_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_100 646745..646936 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft105_2a-0001-exon	agat-three_prime_utr-591	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_100 653226..653574 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_100:645977..653574+
coding sequence from alignment at Scaffold_100:645977..653574+

spliced messenger RNA

>EsuBft105_2a-0001 ID=EsuBft105_2a-0001|Name=EsuBft105_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1408bp|location=Sequence derived from alignment at Scaffold_100:645977..653574+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGGTGTGGTGGTGCCTTGAAGCCTGTACAATGCACATGCGCAGAAGACTC
CGAGTGCGCAGAGGGACTGGATTGTTGCCCCATCGACAACGAGTGCTACA
ATCCGAACGCCCGGAACGGGGCATCTGACTGCACTATTTGCCCGGACGGT
AGCAACCTCTGCAAGGACCCCCACATGAAGGGCCTGCTCGGCCAGAGCAT
CGACTGGTTTGGCATCGACGGTGGATGGTACTCCTTTGTTCAGGACCCTG
ACGTTGATCTGAACGTGAACGTGCGGCTCACGGCACCTCTCCCCGAAGAG
TTCCCTGACCGCCAGCTGGTCACCGGACTCTCGGTCATGGCGGGGGGCCA
CTCGCTGGTTATCGAGGTGACAAACCCCTACGACACTGACACGGCCGGGG
GCTGCTCCGACGGGGCGCCGGCACCATGCCTGGCAAACGGCGCACTGAGG
GTCACCGTGGATGGCGAGAAGGAAGCCGATGATTCTCCCCTACTGCACAC
CGTCAGGGACGAGACCCTACCTGGTGGCATCCAAGTGTCCGCCGCCAACC
TCCCGGTACAGTGCTGGCAGTTCGGCGGGGACAAGATCTGGGCCCGGCAC
TACGCCGACACTATGGAGGGGCGGCGTCATCTGCTTTCGGAGACCTTCGA
AGAATGGATCTTGAGCTTCCAGCACATGGTAGCCCACGACTGGTGTACCG
AGTACATCGCCCACAAGGGCCTGTCTGACGTCCAGTCCGCCCAAGCCATC
TACCAGATCATCACACCGGAGGTCGTCGTGCGGCTCAACGTCGGAATCGG
CCACCAGACCGGGGGGCACGTGCAAATGGACGGCCGTGTCGTTCCCGACC
TCGATGTGTGGGAGATGGACGTCGGCCTAGCCGGCCTGTCCCTCGAGAAC
GAAACGTTGATCGGGATTCTGGGAGAGACGGCCCGCCCAGTGCTTGACGA
GGATGGGCGCGCCGTGATGAAGGGCAACAAGGCCTACCGCGGGACTCCCG
AGGACTACCGTGTTTCCGGTGCCCTGGGGACGGACTTCGCCCTCCTGCGC
CAAAAGTGATGCGGCGAGGCAGGGGCGTTTCATCGCACAAGCGAGAGTGT
TGGCTTTGGTGTTGGCGCAAACAGTCATGAACGCGTGGCGATCCGCGTTT
TTCCCCCCGGGTCGACTCCGACTCTATGAAAACATTCGCCCACGGGAATG
GTGGTCATGCTACACCGCTCTGCGTGCTATTCGTAGATTAGTCAATGTAA
ATGTTCAAAGCAATCGTTTTTTGCACATGTTGCAGACTCTATTGCTGGTG
GATTGTCGGCCCTCGAATTCTTTCATCGATTGGTTAACTCCGTCGAGCTG
GATACTCGCCACGAACTGTAAGGAGTGGCGAGAGGTCATGATCAAGCCGG
TACACACC

protein sequence of EsuBft105_2a-0001

>EsuBft105_2 ID=EsuBft105_2|Name=EsuBft105_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=294bp
MKGLLGQSIDWFGIDGGWYSFVQDPDVDLNVNVRLTAPLPEEFPDRQLVT
GLSVMAGGHSLVIEVTNPYDTDTAGGCSDGAPAPCLANGALRVTVDGEKE
ADDSPLLHTVRDETLPGGIQVSAANLPVQCWQFGGDKIWARHYADTMEGR
RHLLSETFEEWILSFQHMVAHDWCTEYIAHKGLSDVQSAQAIYQIITPEV
VVRLNVGIGHQTGGHVQMDGRVVPDLDVWEMDVGLAGLSLENETLIGILG
ETARPVLDEDGRAVMKGNKAYRGTPEDYRVSGALGTDFALLRQK

mRNA from alignment at Scaffold_100:645977..653574+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft105_2a-0001 ID=EsuBft105_2a-0001|Name=EsuBft105_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=7598bp|location=Sequence derived from alignment at Scaffold_100:645977..653574+ (Ectocarpus subulatus male Bft15b)
CGGTGTGGTGGTGCCTTGAAGCCTGTACAATGCACATGCGCAGAAGACTC
CGAGTGCGCAGAGGGACTGGATTGTTGCCCCATCGACAACGAGTGCTACA
ATCCGAACGCCCGGAACGGGGCATCTGACTGCAGTAAGTTGTGTCGTTGT
GCGATTTTTTTTTTCCCGAGGCTGGCGTTGAACATGCCTGCTCCATATTT
TCTTCCATGTGATTGATTCTCCTTTTCCCCATTTCGATACGCCGCCCGTA
AAATGTCCGACCCCATCGCCGCACCTGCAAGACGGGTAAGGGTCCAACAC
AGATCTATCTCTTGTTGCACCCTCCGACGTGGCTGTACTTCTGATTCACC
CTTGCCTACACCAAAAGGGACCTTGGAATTGTTCCCGGTCAAGCCGAGCC
GTCGCACGGAGAGTCGAATCTCTGCTCATTAAAAGAAACAACCTTAGGAA
TGACTTGTGGTAACTAGGAATGACTTTGTGATGAAGGGTACACTGATACG
TACGCGGTTCTCTGAGGTAAGATCGACTTTGCTTCAATCGCTGTTCGCAT
CTTGGTCGCACAAAACTTGAGCTCCGGAAGTATGTGGGGATGCGATGGAT
CGCACACACACGTAGTCACGGTAAATGGTGTTGCACAGGCATCTTGACAT
TCTGTGAGTTGAAATAAACATTGTCGACGTCCTTCCTCGCCCCCTCGCCA
CTACCCGCGAACCTGTACAATTTCCAGCTATTTGCCCGGACGGTAGCAAC
CTCTGCAAGGACCCCCACATGAAGGGCCTGCTCGGCCAGAGCATCGACTG
GTTTGGCATCGACGGTGGATGGTACTCCTTTGTTCAGGACCCTGACGTTG
ATCTGAACGTGAACGTGCGGCTCACGGCACCTCTCCCCGAAGAGTTCCCT
GACCGCCAGCTGGTCACCGGACTCTCGGTCATGGCGGGGGGCCACTCGCT
GGTTATCGAGGTGCGGCCCTCGATGCAATGCACTATTTAGGCGGACGTGT
GAGTGGTGGAGGTGTGCGTCGAGAGTACATACCTCTGGCGAGTACCTAAA
TCATCATTGTTATGCCTGTGTTCGATTTTTCAATGGGAAAATTACGGCAG
ATATATTTACACCAATAGACCAGTCAGCCGCTGACTCGCTCGAGTAGTCT
AATGCGTTAGCCTTTTTAACAACAGACTAGAGGATACCGAGGCGGGTTCG
AATCCCAGCTACGACGCCATGATGCCAAAATACACCTTTGATGCACCATC
ACAAGACTGGCGAGGGGTCCGGCCCCGGAGATCACTCTCCTTCTAGCTGG
CCTTTTTTATGCATCGCACTACCCCATCCATTGGAAGACCAGCCGCTGAC
CCATTCATTGATGGGTAGGCGTTTTTACCGGGGTATTTTCCGGAAACACG
CCGTCTCACTTAGCGCAAAGCTTCTCCACCCCCAGCTACTGCAGTCGAAC
ACCAACTCGCACGCAGCCTGTCGTCTTCCCGACCCCTGATCGTGTTAACT
CGGGGCAACAAAACTACTCAACACATTATTGTTTGGTTTCACCTCTCCGA
TTTTAATTTTTCACATTCACTCGTCGCGCGTTCAGGTTGTCCTGTATGGC
ACATACATAGGAACCTTGCTTGAAACGGAATTGACCCGTTGACCCGAGAG
GTGATCGATCACTGACCCCACCTGCGGTGGGTGATCTTCTCTGGTCGTGT
CAAGGCATCTCACATATATCGCATCTATCGACCGCATCGAGCCAATTCTG
GGACGTGGCGTACAGGTCGTGTACTAGCAGCCCGGCATTCATTCCGGGTT
CGACATGGGATATCAAGTCCTTGTGCGTTAGCTAATGAATTAAGTCGTGA
CTTAACAGGCACAGCGTACGCATTCATTAGATTCGTAGGTAGGCAGTGTT
TTGAATCGTTTTGGCCTGGGAGAAACTGCCGTACCTTTCCAAAGCCTTCC
CTTACAAGCGACAAACGATCGACTCAGGTGACAAACCCCTACGACACTGA
CACGGCCGGGGGCTGCTCCGACGGGGCGCCGGCACCATGCCTGGCAAACG
GCGCACTGAGGGTCACCGTGGATGGCGAGAAGGAAGCCGATGATTCTCCC
CTACTGCACACCGTCAGGTACTAGAATACTGTCAGTTTTGTCCGAGGAGG
CGCATTGTAGGTAATCGTCCGTCTACCCTGAGAACCGGGTCGTCCTCGGC
CAGACACCACCCACCGCGGCAGAGCCCGGTAATGGTTGACACTACGCTTC
TGGAGCGGGACGGCCGCCGGGCTCACGCCGTTGTTGTGTAAAGTAAAATC
GGTTTGGAAGAAAAAACCTGCGGGCCGTACCGGCGTAAGAGCGTGGGAAG
CCGTCGCGTGTCCAGATGCATCCAAGAAAATCGCTTCCTTTTATCATAAC
AAGCGGTTGAAGAGTTCATTTGTTGGTATTGCATGGTTGGGCCGGTGCTT
TTCTCTCTACTTGACGTTCGCCGGGTGGGTGTGTAAGAGATAGGGCGGGC
GCGTTTGGCTCGCCTCCATTCTGTGGTCAAGGACAACCGCAAATGGACAA
TATATCTGTTGTTTGCTGACGATGATGACGATGCTACATGTACAAAGATC
GCAGTAGTACTGCAGTGAAGCTGGGGTGCTGTAGCGGACCGCTCGGTTTG
ACCTTCATTCTCGCTCTCTGTTTGGAATGACGGCGCGTGCGTAGTTTTTT
TCGAGTGTGCCGTCATGGAATACGGTCGACCCCAACTTTTTTTCATGAAA
ACAGTTGGTTGTTTGTTGGGCCTCCTCGCCTCCTGTGTCTTCCCTCTGTG
CCGCGCGCCTGCCCGGGTCGTTCTCGTAGAGGCATGGACGGTAGTGGACG
CGCTTTTTCCTGCAGGTTCTTTCAAACCTGTGAAAAAAATGTAGAATGTA
TGTTAAATGTTCCCCAACTTCATGTATTTTCATGGGCCGAAAGGCCGTAC
ACAGCGTAATGTATATGTTTAATGTTTCTCAACCTTGAGGGATGAAAAAC
GAAAAAACGCAACAAAAGGTCCAATTTTGGGCCGCAAAACAGCCCGAACC
ATGAATATCAAAGCAAAACGTACGCGGAAGGACTTCTACTTGTAAGAAAT
AGTACTTCTTAGCGTTTTTTGTCGTCCATCGCATCAGCCAGGCTTGCTTG
TCCTATCGCAGCGTTACGAAGCAGAAGCCAGTCATCAGCGTCCCAACCCG
CTTGGTTGCGCATGTTGCCTCTGTTATACTTACATCCAGGGACGAGACCC
TACCTGGTGGCATCCAAGTGTCCGCCGCCAACCTCCCGGTACAGTGCTGG
CAGTTCGGCGGGGACAAGATCTGGGCCCGGCACTACGCCGACACTATGGA
GGGGCGGCGTCATCTGCTTTCGGAGACCTTCGAAGAATGGATCTTGAGCT
TCCAGCACATGGTAGCCCACGACTGGTAAGCCGCCCTCCTCGCTTAGCAG
CAGCAGCCTGAAAAGCATCACGCAAGTAGGATGTCGTGGCCAAAGAGATA
GAAGTGACGAAGCATTTGTTGCCCCCGGAGTACGATAAGTGCGTGGCTTG
TTCGTGCATGCATCTGGTCCAATCGTCGTCGAAAAATCGTCGAAGGACGT
GGTACCAAGTAGCATGCTCACCTGCTCGAATGCGCTCCCTGCCCCCTACG
AATTAATGCCTAACGATTACAGCGTCATGACGCAAGTCAAACAGTGTATT
CGATATACTCGTAGCATAGTATGATGGTTGAGATGTTATGTACGTACGTA
CGAATATTGCAATGATGAGATGCGGAGGAACAGGAACTTTCTACATATTT
TCCTTGGTTGTGAGAGGCTTTTGGTGAGGATTCAGAGAGATTCGTTGTGT
GAGAAAGCATGAAGGCGTGACTCGATACCGTGATGGTTTGACGAGCACGA
GCACGCCCCCGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGAACAGGAACTTTCTACATATTTTCCTTGGT
TGTGAGAGGCTTTTGGTGAGGATTCGGAGAGATTCGTTGTGTGAGAAAGC
ATGAAGGCGTGACTCGATACCGTGATGGTTTGACGAGCACGAGCACGCCC
CCGATTAATACAACACACGACAACACGGATACAACACGTCTGTACGACTT
TACCTACCCCTACGGCCCGTCATGGCCGAGCTGCTCTACACTCCCATCGC
ACACAACTGAGCCACCCGAATTATCGATCACAGTGTGCGAGTTTGGGAAA
TGTATTCCGTGAATGAACCGACCATTGATCGGCTTACCTAGCCCGTCTCT
GCCGACGAGACCATGGTCTGAACTACGGAATCACGGCTATGCTATGGTCA
CCTTTGTTCTGAAAGCGACGACACTCGCTGTGATCTCGAGTGCGTAGCGG
CATGGGAAGCACGCGCTCGGTGCCATGCATGCATCATCGTGATCAACAAG
GTTTTCGTGTGATTGAGAGCGAAGTTTCTGATTGAGAGCGAGATTGCGCG
ATGCGCTGTAGCTGGACTACCGCTGAGAGGTGGAGCTTGCTGCGTGACTT
GAATTGAAGGCCTAGCCCGTAGCTACAAGCCGATACCCTGGTCATCCTGT
GGGCGTCTCTCGTTGTGGAGCTACAGCGGGGAGCAGAATCTACAGCAGAG
CTCACCGCCCGCGATCAAATCGCCCTGAAACAGTTTGAGGCAGGAATAGC
CAATCTGGGGAAATCTAGCAACTTGTCTAGCTCCTAGCTGCCGCATCCGA
TCGCGATGACACGCATATATGCTCGTGACGCTGCTGATGAGACCTTCAAT
TTTCGCCGCTTCTTGGAAGAGCCCGCCCCCTACTTCCCAAGAAATGGCAA
GAGGCGTCTGGACCCGAAATTTCAAATTTTTTGGCTCCCGCTCTCAATCG
CATACTCCGCTCTCAATCAGGCGAAAACCCTGTTAATCGTGCTATCTGCC
GTGTCCTATCCGCCGATCGACCGTAACACCAGGTGTACCGAGTACATCGC
CCACAAGGGCCTGTCTGACGTCCAGTCCGCCCAAGCCATCTACCAGATCA
TCACACCGGAGGTCGTCGTGCGGCTCAACGTCGGAATCGGCCACCAGACC
GGGGGGCACGTGCAAATGGACGGCCGTGTCGTTCCCGACCTCGATGTGTG
GGAGATGGACGTCGGCCTAGCCGGCCTGTCCCTCGAGAACGAAACGTTGA
TCGGGATTCTGGGAGAGACGGCCCGCCCAGTGCTTGACGAGGATGGGCGC
GCCGTGATGAAGGGCAACAAGGCCTACCGCGGGACTCCCGAGGACTACCG
TGTTTCCGGTGCCCTGGGGACGGACTTCGCCCTCCTGCGCCAAAAGTGAT
GCGGCGAGGCAGGGGCGTTTCATCGCACAAGCGAGAGTGTTGGCTTTGGT
GTTGGCGCAAACAGTCATGAACGCGTGGCGATCCGCGTTTTTCCCCCCGG
GTCGACTCCGACTCTATGAAAACATTCGCCCACGGGAATGGTGGTCATGC
TACACCGCTCTGCGTGCTATTCGTAGATTAGTCAATGTAAATGTTCAAAG
CAATCGTTTTTTGCACATGTTGCAGACTCTATTGCTGGTGGATTGTCGGC
CCTCGAATTCTTTCATCGATTGGTTAACTCCGTCGAGCTGGATACTCGCC
ACGAACTGTAAGGAGTGGCGAGAGGTCATGATCAAGCCGGTACACACC

Coding sequence (CDS) from alignment at Scaffold_100:645977..653574+

>EsuBft105_2a-0001 ID=EsuBft105_2a-0001|Name=EsuBft105_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=885bp|location=Sequence derived from alignment at Scaffold_100:645977..653574+ (Ectocarpus subulatus male Bft15b)
ATGAAGGGCCTGCTCGGCCAGAGCATCGACTGGTTTGGCATCGACGGTGG
ATGGTACTCCTTTGTTCAGGACCCTGACGTTGATCTGAACGTGAACGTGC
GGCTCACGGCACCTCTCCCCGAAGAGTTCCCTGACCGCCAGCTGGTCACC
GGACTCTCGGTCATGGCGGGGGGCCACTCGCTGGTTATCGAGGTGACAAA
CCCCTACGACACTGACACGGCCGGGGGCTGCTCCGACGGGGCGCCGGCAC
CATGCCTGGCAAACGGCGCACTGAGGGTCACCGTGGATGGCGAGAAGGAA
GCCGATGATTCTCCCCTACTGCACACCGTCAGGGACGAGACCCTACCTGG
TGGCATCCAAGTGTCCGCCGCCAACCTCCCGGTACAGTGCTGGCAGTTCG
GCGGGGACAAGATCTGGGCCCGGCACTACGCCGACACTATGGAGGGGCGG
CGTCATCTGCTTTCGGAGACCTTCGAAGAATGGATCTTGAGCTTCCAGCA
CATGGTAGCCCACGACTGGTGTACCGAGTACATCGCCCACAAGGGCCTGT
CTGACGTCCAGTCCGCCCAAGCCATCTACCAGATCATCACACCGGAGGTC
GTCGTGCGGCTCAACGTCGGAATCGGCCACCAGACCGGGGGGCACGTGCA
AATGGACGGCCGTGTCGTTCCCGACCTCGATGTGTGGGAGATGGACGTCG
GCCTAGCCGGCCTGTCCCTCGAGAACGAAACGTTGATCGGGATTCTGGGA
GAGACGGCCCGCCCAGTGCTTGACGAGGATGGGCGCGCCGTGATGAAGGG
CAACAAGGCCTACCGCGGGACTCCCGAGGACTACCGTGTTTCCGGTGCCC
TGGGGACGGACTTCGCCCTCCTGCGCCAAAAGTGA