EsuBft105_24a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft105_24a-0001
Unique NameEsuBft105_24a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_100contigScaffold_100:419408..420430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft105_24
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length81
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft105_24aEsuBft105_24aEctocarpus subulatus male Bft15bgeneScaffold_100 419408..420430 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft105_24a-0001-exonEsuBft105_24a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_100 419408..419547 +
EsuBft105_24a-0001-exonagat-exon-19360Ectocarpus subulatus male Bft15bexonScaffold_100 419752..420430 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft105_24a-0001-cdsEsuBft105_24a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_100 419408..419547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft105_24a-0001EsuBft105_24Ectocarpus subulatus male Bft15bpolypeptideScaffold_100 419408..420430 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft105_24a-0001 ID=EsuBft105_24a-0001|Name=EsuBft105_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=819bp|location=Sequence derived from alignment at Scaffold_100:419408..420430+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCAAAAAGGAGCTTCCATGGAGAAATGGAGAACTGCTCATCCTT
GTACACCTGCCCAGACACTACCGGAAACTGCTTCCACATGGAGTCTCGAA
CAGCTATCTGCACTTGCGCATCCGAAGGCTTGAACGCGTGGAAGGTAGCA
TCAAGAAATTCCAGCGTGGCACGGTTGGTGGTTTGGCCTTCAACGACAGC
AGCACGGGCACGTTTGCGCAACAACGGAAGCCATCCGGGGACCCAAGATG
GAGGACTCCAGCCGCCTCTTGCTCGTGCTGCCTCCAACAACGACTTCAAG
CACGATCTGCAAGCCCCCCGGCAGGCCTCTTCACGCCCTGCACATGGTTG
TGGAGTGGACAAGGACTACAGTCGGTCGGCGGCTCCTGCGTCTAAGAGCT
GGAAGAACCGTTGGGGTGACCAAGATTCGACCACTGCCGCTCCACTCAGT
CTTCGCGAGGGCGCGGCACCGGAGATGGCGGGCGAGGGCAAGCCGTGGGG
ACCCAGCCTACCAGGTCTTCGCCGGCGGGCCGCCACCGCCGGAGCAGGAG
TCGGAGCGCAGAACGTCAACAGCGCACCAATGCTTCGTCTAGGCGTGGGC
GCAGCCGGAGCGGAGACCGTCGTGGGAGAAACACGCCGTCGTCTAGGCGT
AGCCGCAGCCGGAGCCAGAACCGGAGCGGGGGCAACAGCAGGGCGACCAG
CACTGACAACAGTCGCGGTGGAAAAGGGGGACGGAAGTCAGGCCACGGTA
ACAGGCAAGTCATGCATGATCGGGGTGGTTTTCTTGGCTCTGGATTGTTG
GGGGAAAATATGGATGTGA
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protein sequence of EsuBft105_24a-0001

>EsuBft105_24 ID=EsuBft105_24|Name=EsuBft105_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=272bp
MSPKRSFHGEMENCSSLYTCPDTTGNCFHMESRTAICTCASEGLNAWKVA
SRNSSVARLVVWPSTTAARARLRNNGSHPGTQDGGLQPPLARAASNNDFK
HDLQAPRQASSRPAHGCGVDKDYSRSAAPASKSWKNRWGDQDSTTAAPLS
LREGAAPEMAGEGKPWGPSLPGLRRRAATAGAGVGAQNVNSAPMLRLGVG
AAGAETVVGETRRRLGVAAAGARTGAGATAGRPALTTVAVEKGDGSQATV
TGKSCMIGVVFLALDCWGKIWM
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mRNA from alignment at Scaffold_100:419408..420430+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft105_24a-0001 ID=EsuBft105_24a-0001|Name=EsuBft105_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1023bp|location=Sequence derived from alignment at Scaffold_100:419408..420430+ (Ectocarpus subulatus male Bft15b)
ATGTCGCCAAAAAGGAGCTTCCATGGAGAAATGGAGAACTGCTCATCCTT
GTACACCTGCCCAGACACTACCGGAAACTGCTTCCACATGGAGTCTCGAA
CAGCTATCTGCACTTGCGCATCCGAAGGCTTGAACGCGTGGTGAGAAACC
ATGACGGTCATGGCCAGAGCCTTATAGCGACGAATGTATTCTCCGTAAGT
CTCGCCGTTGGATACGCCAAAACTGCGAGGACGATCAATCCCCGAGCTCT
TGTCTTGAGTGTCCCAGGCAGCCGCCAATTTCTGGGTGAAGAAGGCGTAG
GTCGAGGGCCCTGCCGGTTCCTTGCGCAGATTTTCCACCTGTAGGAAGGT
AGCATCAAGAAATTCCAGCGTGGCACGGTTGGTGGTTTGGCCTTCAACGA
CAGCAGCACGGGCACGTTTGCGCAACAACGGAAGCCATCCGGGGACCCAA
GATGGAGGACTCCAGCCGCCTCTTGCTCGTGCTGCCTCCAACAACGACTT
CAAGCACGATCTGCAAGCCCCCCGGCAGGCCTCTTCACGCCCTGCACATG
GTTGTGGAGTGGACAAGGACTACAGTCGGTCGGCGGCTCCTGCGTCTAAG
AGCTGGAAGAACCGTTGGGGTGACCAAGATTCGACCACTGCCGCTCCACT
CAGTCTTCGCGAGGGCGCGGCACCGGAGATGGCGGGCGAGGGCAAGCCGT
GGGGACCCAGCCTACCAGGTCTTCGCCGGCGGGCCGCCACCGCCGGAGCA
GGAGTCGGAGCGCAGAACGTCAACAGCGCACCAATGCTTCGTCTAGGCGT
GGGCGCAGCCGGAGCGGAGACCGTCGTGGGAGAAACACGCCGTCGTCTAG
GCGTAGCCGCAGCCGGAGCCAGAACCGGAGCGGGGGCAACAGCAGGGCGA
CCAGCACTGACAACAGTCGCGGTGGAAAAGGGGGACGGAAGTCAGGCCAC
GGTAACAGGCAAGTCATGCATGATCGGGGTGGTTTTCTTGGCTCTGGATT
GTTGGGGGAAAATATGGATGTGA
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Coding sequence (CDS) from alignment at Scaffold_100:419408..420430+

>EsuBft105_24a-0001 ID=EsuBft105_24a-0001|Name=EsuBft105_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=819bp|location=Sequence derived from alignment at Scaffold_100:419408..420430+ (Ectocarpus subulatus male Bft15b)
ATGTCGCCAAAAAGGAGCTTCCATGGAGAAATGGAGAACTGCTCATCCTT
GTACACCTGCCCAGACACTACCGGAAACTGCTTCCACATGGAGTCTCGAA
CAGCTATCTGCACTTGCGCATCCGAAGGCTTGAACGCGTGGAAGGTAGCA
TCAAGAAATTCCAGCGTGGCACGGTTGGTGGTTTGGCCTTCAACGACAGC
AGCACGGGCACGTTTGCGCAACAACGGAAGCCATCCGGGGACCCAAGATG
GAGGACTCCAGCCGCCTCTTGCTCGTGCTGCCTCCAACAACGACTTCAAG
CACGATCTGCAAGCCCCCCGGCAGGCCTCTTCACGCCCTGCACATGGTTG
TGGAGTGGACAAGGACTACAGTCGGTCGGCGGCTCCTGCGTCTAAGAGCT
GGAAGAACCGTTGGGGTGACCAAGATTCGACCACTGCCGCTCCACTCAGT
CTTCGCGAGGGCGCGGCACCGGAGATGGCGGGCGAGGGCAAGCCGTGGGG
ACCCAGCCTACCAGGTCTTCGCCGGCGGGCCGCCACCGCCGGAGCAGGAG
TCGGAGCGCAGAACGTCAACAGCGCACCAATGCTTCGTCTAGGCGTGGGC
GCAGCCGGAGCGGAGACCGTCGTGGGAGAAACACGCCGTCGTCTAGGCGT
AGCCGCAGCCGGAGCCAGAACCGGAGCGGGGGCAACAGCAGGGCGACCAG
CACTGACAACAGTCGCGGTGGAAAAGGGGGACGGAAGTCAGGCCACGGTA
ACAGGCAAGTCATGCATGATCGGGGTGGTTTTCTTGGCTCTGGATTGTTG
GGGGAAAATATGGATGTGA
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