EsuBft105_23a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft105_23a-0001
Unique NameEsuBft105_23a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_100contigScaffold_100:430404..431500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft105_23
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length103
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft105_23aEsuBft105_23aEctocarpus subulatus male Bft15bgeneScaffold_100 430404..431500 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft105_23a-0001-exonagat-exon-19359Ectocarpus subulatus male Bft15bexonScaffold_100 430404..430814 -
EsuBft105_23a-0001-exonEsuBft105_23a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_100 430878..431500 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft105_23a-0001-exonagat-three_prime_utr-589Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_100 430404..430814 -
EsuBft105_23a-0001-exonagat-three_prime_utr-590Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_100 430878..431224 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft105_23a-0001-cdsEsuBft105_23a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_100 431225..431500 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft105_23a-0001EsuBft105_23Ectocarpus subulatus male Bft15bpolypeptideScaffold_100 431225..431500 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft105_23a-0001 ID=EsuBft105_23a-0001|Name=EsuBft105_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1034bp|location=Sequence derived from alignment at Scaffold_100:430404..431500- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCGCGGCCGGCGGCGCCGGCGGCGCTACGCGCGCGGGCCACCCCG
CGGGCCCCGGGGCTACCGTCTTGCCAAGGTTGAAACCTGGTCCTCCATCC
ACAGGTTCTCCCTCCGCCTTCCCTCCACCTTGGCTGGACGCGCCCTCCCC
AACCTCGTCCTCCCCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTC
GCTCAAGATGCTCACGCATTCGCGGTTGGTGTTGATTCCTGGGTCGAGGT
AAAAACACTTTTGGGCTTTCGGCTCGGACTTGTGCGTGCGCTTGACCTTG
TATACGGCAGGTTTGAGGAACGGGTACGTCGCCCCCGGCGGGGGAAGGTG
CCCGTGCCACATCTCGTACGGCGACTTCTTCTCTGGGTTGGATGTGGTGG
AGGTGCAGTTCAGGGCGTTGCATGACCAGGCTATGGCCTCGGCCCAAAGG
GATGGGTAGTTCGGTGCTCCGGGGTAAAGAGTTGGCGCTTGGATACGGGC
GGCTAGTGCTGCATCCTTGATCAGACCCAGTGCTCTCTCAGCTACACCGT
TGTATTCTGGGCTGTGCGCGGGGGTGAACTCCTGTTTGATGCAGTACTTC
CGGCACACCCTGCCGAACTCTCCCTCAAAGAACTCTCCTCCGCGGTCAAA
TCTCACGACCATGACATCGGACGGGGCACCGTCTGCCCGGTTTCTGCAAG
GTACCTCTCGAATGCCTCAGCTGCGTCTGATTTGTGCTTCAGGAAATAGA
CACGGTTCCACCTTGTGTAATCATCCTTGACAATGAGAGTGTACCACTTT
CCCCCCAAGCTCTGCACCCTAGCTTTTCCACTCAAATCCACGAAAACTCG
CTGCAGTTTCTTAACTGCTCGGGTCGACGTTTTG
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protein sequence of EsuBft105_23a-0001

>EsuBft105_23 ID=EsuBft105_23|Name=EsuBft105_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=92bp
MGRGRRRRRRYARGPPRGPRGYRLAKVETWSSIHRFSLRLPSTLAGRALP
NLVLPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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mRNA from alignment at Scaffold_100:430404..431500-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft105_23a-0001 ID=EsuBft105_23a-0001|Name=EsuBft105_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1097bp|location=Sequence derived from alignment at Scaffold_100:430404..431500- (Ectocarpus subulatus male Bft15b)
ATGGGGCGCGGCCGGCGGCGCCGGCGGCGCTACGCGCGCGGGCCACCCCG
CGGGCCCCGGGGCTACCGTCTTGCCAAGGTTGAAACCTGGTCCTCCATCC
ACAGGTTCTCCCTCCGCCTTCCCTCCACCTTGGCTGGACGCGCCCTCCCC
AACCTCGTCCTCCCCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTC
GCTCAAGATGCTCACGCATTCGCGGTTGGTGTTGATTCCTGGGTCGAGGT
AAAAACACTTTTGGGCTTTCGGCTCGGACTTGTGCGTGCGCTTGACCTTG
TATACGGCAGGTTTGAGGAACGGGTACGTCGCCCCCGGCGGGGGAAGGTG
CCCGTGCCACATCTCGTACGGCGACTTCTTCTCTGGGTTGGATGTGGTGG
AGGTGCAGTTCAGGGCGTTGCATGACCAGGCTATGGCCTCGGCCCAAAGG
GATGGGTAGTTCGGTGCTCCGGGGTAAAGAGTTGGCNCCCAAGCTATGGC
CTCGGCCCAAAGGGAGGGGTAGTTTGGTGCTCCGAGGTAAAGAGTTGGCG
CTTGGATACGGGCGGCTAGTGCTGCATCCTTGATCAGACCCAGTGCTCTC
TCAGCTACACCGTTGTATTCTGGGCTGTGCGCGGGGGTGAACTCCTGTTT
GATGCAGTACTTCCGGCACACCCTGCCGAACTCTCCCTCAAAGAACTCTC
CTCCGCGGTCAAATCTCACGACCATGACATCGGACGGGGCACCGTCTGCC
CGGTTTCTGCAAGGTACCTCTCGAATGCCTCAGCTGCGTCTGATTTGTGC
TTCAGGAAATAGACACGGTTCCACCTTGTGTAATCATCCTTGACAATGAG
AGTGTACCACTTTCCCCCCAAGCTCTGCACCCTAGCTTTTCCACTCAAAT
CCACGAAAACTCGCTGCAGTTTCTTAACTGCTCGGGTCGACGTTTTG
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Coding sequence (CDS) from alignment at Scaffold_100:430404..431500-

>EsuBft105_23a-0001 ID=EsuBft105_23a-0001|Name=EsuBft105_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=276bp|location=Sequence derived from alignment at Scaffold_100:430404..431500- (Ectocarpus subulatus male Bft15b)
ATGGGGCGCGGCCGGCGGCGCCGGCGGCGCTACGCGCGCGGGCCACCCCG
CGGGCCCCGGGGCTACCGTCTTGCCAAGGTTGAAACCTGGTCCTCCATCC
ACAGGTTCTCCCTCCGCCTTCCCTCCACCTTGGCTGGACGCGCCCTCCCC
AACCTCGTCCTCCCCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNN
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