EsuBft105_22a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft105_22a-0001
Unique NameEsuBft105_22a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_100contigScaffold_100:431888..433950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6334.EFV48939
ProteomeIdEsuBft105_22
Protein domainsIPR013103
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon5
Max annot lvl33208|Metazoa
Length1483
Hectar predicted targeting categoryother localisation
Evalue1.1e-26
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,40FC4@6231|Nematoda
Date last modified2016-06-13
Date creation2016-06-13
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft105_22aEsuBft105_22aEctocarpus subulatus male Bft15bgeneScaffold_100 431888..433950 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft105_22a-0001EsuBft105_22Ectocarpus subulatus male Bft15bpolypeptideScaffold_100 431888..433532 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft105_22a-0001-exonagat-exon-19355Ectocarpus subulatus male Bft15bexonScaffold_100 431888..432085 +
EsuBft105_22a-0001-exonagat-exon-19357Ectocarpus subulatus male Bft15bexonScaffold_100 432173..432253 +
EsuBft105_22a-0001-exonagat-exon-19356Ectocarpus subulatus male Bft15bexonScaffold_100 432467..432818 +
EsuBft105_22a-0001-exonEsuBft105_22a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_100 432949..433260 +
EsuBft105_22a-0001-exonagat-exon-19358Ectocarpus subulatus male Bft15bexonScaffold_100 433411..433950 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft105_22a-0001-cdsEsuBft105_22a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_100 431888..432085 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft105_22a-0001-exonagat-three_prime_utr-588Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_100 433533..433950 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft105_22a-0001 ID=EsuBft105_22a-0001|Name=EsuBft105_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1483bp|location=Sequence derived from alignment at Scaffold_100:431888..433950+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCTCGGCGGTACTTCACGTGGTGGAAGGGCTAGAGGCGAGGGCGGT
GCGAGAGTTGCTGTTCGAGCGCGCGGAGGAGGCCCACGCTGCGCGCCAAG
AGGCGGAGGACTTCCTGCTGGGTACGGTGGACGTCATGCCCAACTCGCCA
GACGCCTTCGAGACGGCGCTGACGTCCCACGAGCTAAGTGAATCCCCCGC
CATGAGGGAAGAGTTGGAAGAGCACTTGGGCACGGGGACGTTATCATTCG
TAGACGGCGCGCCAGAGGGGCGCAGGCCTGCGTACACACACGCCACGCTA
GACGAGGAGGTATTTCTGAGGCTCCACGCTGGGTGCGGGGACAAATCGCA
TAAGATTGTCAAGGCTGAGCGTGCGATTTACGGTCTGAAGAAGAGCGGTA
GGCAGTGGGGGTGCCACGCTGCTGATACGCCAGTCGAGCACGGGTTCGAG
CAGTGCAAGGCGGACCCGTGTGTTTTCCGCAAGATGGAAGACGAAGTCGT
GGTGATGATTATCGTGATCTACATGGATGACATTTTGGTGGCTGGGTCTG
ACGAGGATTGCGAGGAGTTGCTTGCTTCTCTCAACAAAAATTTCCCACCA
AAAATCTTGGAGAATGCGAATGGTTGGACGGGACCGAAGCGAGATGACGA
GAAGGGAGGGGAGTGGCCGGTGAGTGAGGCCATCGGCAGCGTGATGTGGG
TGTCAACCTTCTCGCGTCTAGACGTCTCGTTCGCCATGCATGCGGTAGCG
CGCCACGCCCACTCCCCGGCGAAGAGGCACTGGGATGCCATCCACAAGAT
CCTCGGCTACTTGAAAGGGACGAGGGACCTCGGCATCACCTACCAACGGG
GATCGGGTTTAGGGGTGGCCGTGTACGTAGACGCTTACTACGCCGACACG
GAGGATAGGCGTTCGGTGTCAGGGTTGGCGACGACGGTTGGAGCATCNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNATTTGCCGGAGTAGCTGTAGCAGTTT
CTAGCACTTGGGAGAGGTCATGTTTTCCATGCGGGGAAAGGCGCATAACT
GTTGCGGTCGGCGTACCAATGGCAGGAGTAGGGGGCGTTGGGAGACCATC
GTCCAGGGGAACGTAGTTCCTCGCGTTCTTGTCTTCGCCTTGGCCGTTAC
AATAAGTGCGGCCGTTGTGATCCGCTGTGATAGCGACGGTTTTTGTGGCG
GTAGGGCTTTTTTCGAGGGGTTTTGCCCAGACG
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protein sequence of EsuBft105_22a-0001

>EsuBft105_22 ID=EsuBft105_22|Name=EsuBft105_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=355bp
MLSAVLHVVEGLEARAVRELLFERAEEAHAARQEAEDFLLGTVDVMPNSP
DAFETALTSHELSESPAMREELEEHLGTGTLSFVDGAPEGRRPAYTHATL
DEEVFLRLHAGCGDKSHKIVKAERAIYGLKKSGRQWGCHAADTPVEHGFE
QCKADPCVFRKMEDEVVVMIIVIYMDDILVAGSDEDCEELLASLNKNFPP
KILENANGWTGPKRDDEKGGEWPVSEAIGSVMWVSTFSRLDVSFAMHAVA
RHAHSPAKRHWDAIHKILGYLKGTRDLGITYQRGSGLGVAVYVDAYYADT
EDRRSVSGLATTVGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXX
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mRNA from alignment at Scaffold_100:431888..433950+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft105_22a-0001 ID=EsuBft105_22a-0001|Name=EsuBft105_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2063bp|location=Sequence derived from alignment at Scaffold_100:431888..433950+ (Ectocarpus subulatus male Bft15b)
ATGCTCTCGGCGGTACTTCACGTGGTGGAAGGGCTAGAGGCGAGGGCGGT
GCGAGAGTTGCTGTTCGAGCGCGCGGAGGAGGCCCACGCTGCGCGCCAAG
AGGCGGAGGACTTCCTGCTGGGTACGGTGGACGTCATGCCCAACTCGCCA
GACGCCTTCGAGACGGCGCTGACGTCCCACGAGCTAAGTGAATCCCCCGT
TGGCTAGCATCCGAGTGATGTAGGACCCCCCCCCATTACCGTAGCCGGCG
TTGCCAAGTCTGTGTACAGAGGGGGGTGGGAACAGGCCATGAGGGAAGAG
TTGGAAGAGCACTTGGGCACGGGGACGTTATCATTCGTAGACGGCGCGCC
AGAGGGGCGCAGGCCTGTAAGCTCAAAGTGGTGTTTTAGTTGGAAGACCA
AGAACGAAGGGAAGATAGAAAGGTTCAGAGCGCGTCTGGTTGCTAGGGGG
TTTTCGCAAACCCCGAACGTCGATTATTTCCATTCGTCTTCCCCTTGCCC
ATCATCCGCATCCATTAAACTAATGCTTGGGGTAGCAAACGAGAAGGGAA
TGAACCTCAATCACTGGGATGTGAAGCAGGCGTACACACACGCCACGCTA
GACGAGGAGGTATTTCTGAGGCTCCACGCTGGGTGCGGGGACAAATCGCA
TAAGATTGTCAAGGCTGAGCGTGCGATTTACGGTCTGAAGAAGAGCGGTA
GGCAGTGGGGGTGCCACGCTGCTGATACGCCAGTCGAGCACGGGTTCGAG
CAGTGCAAGGCGGACCCGTGTGTTTTCCGCAAGATGGAAGACGAAGTCGT
GGTGATGATTATCGTGATCTACATGGATGACATTTTGGTGGCTGGGTCTG
ACGAGGATTGCGAGGAGTTGCTTGCTTCTCTCAACAAAAATTTCCCACCA
AAAATCTTGGAGAATGCGAATGGTTGGACGGGTGCGCCATTGAGAGAGAT
GTAGAGGCTGGGACTCTTGAAATCTCCCAAACCGCGTACATTGATAGCAT
GGTGAAACGCTTTTATGTACAATCGACCTCCGCATCCCTGCTTTCCCTGG
TGTCGACCTAGGACCGAAGCGAGATGACGAGAAGGGAGGGGAGTGGCCGG
TGAGTGAGGCCATCGGCAGCGTGATGTGGGTGTCAACCTTCTCGCGTCTA
GACGTCTCGTTCGCCATGCATGCGGTAGCGCGCCACGCCCACTCCCCGGC
GAAGAGGCACTGGGATGCCATCCACAAGATCCTCGGCTACTTGAAAGGGA
CGAGGGACCTCGGCATCACCTACCAACGGGGATCGGGTTTAGGGGTGGCC
GTGTACGTAGACGCTTACTACGCCGACACGGAGGATAGGCGTTCGGTGTC
AGGGTTGGCGACGACGGTTGGAGGTACCGTAGTCAGCCATGGTAGCAAGA
CACAGAGCATCGTGTCTTTGTCTTCGACGGAAGCCGAATACATAGCTGCC
GAGAGGGCGTCAAGGAGGCGTTGTTGTTGCGTGCTGTGCTTTCGTTTGTT
GCCCCAGAGACCAGTGGTAGCAGCATCNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNATTTGCCGGAGTAGCTGTAGCAGTTTCTAGCACTTGGGAGAGGTCA
TGTTTTCCATGCGGGGAAAGGCGCATAACTGTTGCGGTCGGCGTACCAAT
GGCAGGAGTAGGGGGCGTTGGGAGACCATCGTCCAGGGGAACGTAGTTCC
TCGCGTTCTTGTCTTCGCCTTGGCCGTTACAATAAGTGCGGCCGTTGTGA
TCCGCTGTGATAGCGACGGTTTTTGTGGCGGTAGGGCTTTTTTCGAGGGG
TTTTGCCCAGACG
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Coding sequence (CDS) from alignment at Scaffold_100:431888..433950+

>EsuBft105_22a-0001 ID=EsuBft105_22a-0001|Name=EsuBft105_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1065bp|location=Sequence derived from alignment at Scaffold_100:431888..433950+ (Ectocarpus subulatus male Bft15b)
ATGCTCTCGGCGGTACTTCACGTGGTGGAAGGGCTAGAGGCGAGGGCGGT
GCGAGAGTTGCTGTTCGAGCGCGCGGAGGAGGCCCACGCTGCGCGCCAAG
AGGCGGAGGACTTCCTGCTGGGTACGGTGGACGTCATGCCCAACTCGCCA
GACGCCTTCGAGACGGCGCTGACGTCCCACGAGCTAAGTGAATCCCCCGC
CATGAGGGAAGAGTTGGAAGAGCACTTGGGCACGGGGACGTTATCATTCG
TAGACGGCGCGCCAGAGGGGCGCAGGCCTGCGTACACACACGCCACGCTA
GACGAGGAGGTATTTCTGAGGCTCCACGCTGGGTGCGGGGACAAATCGCA
TAAGATTGTCAAGGCTGAGCGTGCGATTTACGGTCTGAAGAAGAGCGGTA
GGCAGTGGGGGTGCCACGCTGCTGATACGCCAGTCGAGCACGGGTTCGAG
CAGTGCAAGGCGGACCCGTGTGTTTTCCGCAAGATGGAAGACGAAGTCGT
GGTGATGATTATCGTGATCTACATGGATGACATTTTGGTGGCTGGGTCTG
ACGAGGATTGCGAGGAGTTGCTTGCTTCTCTCAACAAAAATTTCCCACCA
AAAATCTTGGAGAATGCGAATGGTTGGACGGGACCGAAGCGAGATGACGA
GAAGGGAGGGGAGTGGCCGGTGAGTGAGGCCATCGGCAGCGTGATGTGGG
TGTCAACCTTCTCGCGTCTAGACGTCTCGTTCGCCATGCATGCGGTAGCG
CGCCACGCCCACTCCCCGGCGAAGAGGCACTGGGATGCCATCCACAAGAT
CCTCGGCTACTTGAAAGGGACGAGGGACCTCGGCATCACCTACCAACGGG
GATCGGGTTTAGGGGTGGCCGTGTACGTAGACGCTTACTACGCCGACACG
GAGGATAGGCGTTCGGTGTCAGGGTTGGCGACGACGGTTGGAGCATCNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNN
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