EsuBft105_20a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft105_20a-0001
Unique NameEsuBft105_20a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_100contigScaffold_100:452558..453878 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft105_20
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length120
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft105_20aEsuBft105_20aEctocarpus subulatus male Bft15bgeneScaffold_100 452558..453878 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft105_20a-0001EsuBft105_20Ectocarpus subulatus male Bft15bpolypeptideScaffold_100 452711..452943 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft105_20a-0001-exonEsuBft105_20a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_100 452558..452779 +
EsuBft105_20a-0001-exonagat-exon-19346Ectocarpus subulatus male Bft15bexonScaffold_100 452842..453225 +
EsuBft105_20a-0001-exonagat-exon-19345Ectocarpus subulatus male Bft15bexonScaffold_100 453277..453878 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft105_20a-0001-exonagat-five_prime_utr-366Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_100 452558..452710 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft105_20a-0001-cdsEsuBft105_20a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_100 452711..452779 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft105_20a-0001-exonagat-three_prime_utr-585Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_100 452944..453225 +
EsuBft105_20a-0001-exonagat-three_prime_utr-586Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_100 453277..453878 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft105_20a-0001 ID=EsuBft105_20a-0001|Name=EsuBft105_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1208bp|location=Sequence derived from alignment at Scaffold_100:452558..453878+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTACACCGGACTGGTACATACACACTATAGTTTAAATTTGTAGGGGAAAG
GCGTTGTTGGAACCAAGCACGCGGGCAATAGGGGTTGTGTCGTTCTACCA
ACTATATCATCACGGATGTGTGCACGTTTCCTCTGTAGCCAGCGTTCAGA
GCCATGCATAATCTAGGCCTTTGGTTTGGGCGTTCGGATTTGGGTAATCT
TGCTCGCTGTATTGTGGGCGTGGATCCGGGGACCCATTATCTTTGGTGGA
CGCCAAACCCTCTTGGGGGCGGGGTTGGCGAGAAGTGGTCGGGTGGGGTG
GGGTATATGGCACAACGGAACTAACAGCAGTGCGATTCCATGATAGATTT
TCCTTGTATTTCCACACACGCATGCACATCGTGGAATCTTTCTGAGAATG
GACAGTTTGGTTTGACTTCTGGTCGCCAACTACATGACAGACAGCCAGGC
CAGCAGTATCTCCGGCGTTTGAGTCTGACCGCGTGTTTCGAGCATGATTA
TACTGTTTTCCCGGTGCTGTAGTAGTTATGGGTGGTCTGTCCGTGTGTGT
GGCGTGGAGCATACAGATATCATCGGTTTCGATCCCCACACACATCGTCT
TTGTAGGTTGTAGAGGACAAAGATAGAATCACACAATTTTTCTATTTTCT
ATCTTGATTGGTGATCCTTTCATTCTACTACGAAGTATTGTTTTATGTTG
ATCGGCTTCGCGTGCCGAGCGGGGGAGTAATGACTCCATTCGTTGAGCGC
AAATTTTCCCTGTTTCCTTTTTTGTGGATGTGTCACTGGTGGCTGGTTGG
ATCATCCTGTTTTGTTTCGGTTTATCCGGGTCCCAAATCGCGTTTGTTTG
CGATTATTTTTGATGGTGGGGATCTTTTTTCTTGTTGTTTTGTGCTCAAC
ATCGCGGGTTTTGTGATGATTTGGTTGTTTGGGTCATTTTTTGTTTTTTC
TTTGTTTTGTACGCTATGGAAGTGTGCACCTTTTGCGAGGGTAATTGGTC
TGTGACCACCGAAGTAAGGCGTCCGCGTCAGTCAGTTGGACGGTACTGAA
CAGATCCAGACCGGAATAACAGTATTAACGACCACAAATCTATTCATGTG
GTTTGGAGGTCCACAAGCATGCATGCGTGTTTGACGTTGCGAGACTGGCG
AGGTCAAGCAGGGAGAATTTCACAACGAACGACGTCAGCTTAGGGGAATG
AGAAGCTC
back to top

protein sequence of EsuBft105_20a-0001

>EsuBft105_20 ID=EsuBft105_20|Name=EsuBft105_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=56bp
MHNLGLWFGRSDLGNLARCIVGVDPGTHYLWWTPNPLGGGVGEKWSGGVG
YMAQRN
back to top

mRNA from alignment at Scaffold_100:452558..453878+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft105_20a-0001 ID=EsuBft105_20a-0001|Name=EsuBft105_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1321bp|location=Sequence derived from alignment at Scaffold_100:452558..453878+ (Ectocarpus subulatus male Bft15b)
TTACACCGGACTGGTACATACACACTATAGTTTAAATTTGTAGGGGAAAG
GCGTTGTTGGAACCAAGCACGCGGGCAATAGGGGTTGTGTCGTTCTACCA
ACTATATCATCACGGATGTGTGCACGTTTCCTCTGTAGCCAGCGTTCAGA
GCCATGCATAATCTAGGCCTTTGGTTTGGGCGTTCGGATTTGGGTAATCT
TGCTCGCTGTATTGTGGGCGTGGTGATGGTCGGCTATTGTGTGAAATTCT
GAGAGAATGATTTGTTTGGCCCCCCACCCACTAGGATCCGGGGACCCATT
ATCTTTGGTGGACGCCAAACCCTCTTGGGGGCGGGGTTGGCGAGAAGTGG
TCGGGTGGGGTGGGGTATATGGCACAACGGAACTAACAGCAGTGCGATTC
CATGATAGATTTTCCTTGTATTTCCACACACGCATGCACATCGTGGAATC
TTTCTGAGAATGGACAGTTTGGTTTGACTTCTGGTCGCCAACTACATGAC
AGACAGCCAGGCCAGCAGTATCTCCGGCGTTTGAGTCTGACCGCGTGTTT
CGAGCATGATTATACTGTTTTCCCGGTGCTGTAGTAGTTATGGGTGGTCT
GTCCGTGTGTGTGGCGTGGAGCATACAGATATCATCGGTTTCGATCCCCA
CACACATCGTCTTTGTAGGTACGTGTCGTGTGTGGATGGGAAGGCCGGCG
GAGTTACACCCCGGCCTAGGTTGTAGAGGACAAAGATAGAATCACACAAT
TTTTCTATTTTCTATCTTGATTGGTGATCCTTTCATTCTACTACGAAGTA
TTGTTTTATGTTGATCGGCTTCGCGTGCCGAGCGGGGGAGTAATGACTCC
ATTCGTTGAGCGCAAATTTTCCCTGTTTCCTTTTTTGTGGATGTGTCACT
GGTGGCTGGTTGGATCATCCTGTTTTGTTTCGGTTTATCCGGGTCCCAAA
TCGCGTTTGTTTGCGATTATTTTTGATGGTGGGGATCTTTTTTCTTGTTG
TTTTGTGCTCAACATCGCGGGTTTTGTGATGATTTGGTTGTTTGGGTCAT
TTTTTGTTTTTTCTTTGTTTTGTACGCTATGGAAGTGTGCACCTTTTGCG
AGGGTAATTGGTCTGTGACCACCGAAGTAAGGCGTCCGCGTCAGTCAGTT
GGACGGTACTGAACAGATCCAGACCGGAATAACAGTATTAACGACCACAA
ATCTATTCATGTGGTTTGGAGGTCCACAAGCATGCATGCGTGTTTGACGT
TGCGAGACTGGCGAGGTCAAGCAGGGAGAATTTCACAACGAACGACGTCA
GCTTAGGGGAATGAGAAGCTC
back to top

Coding sequence (CDS) from alignment at Scaffold_100:452558..453878+

>EsuBft105_20a-0001 ID=EsuBft105_20a-0001|Name=EsuBft105_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=171bp|location=Sequence derived from alignment at Scaffold_100:452558..453878+ (Ectocarpus subulatus male Bft15b)
ATGCATAATCTAGGCCTTTGGTTTGGGCGTTCGGATTTGGGTAATCTTGC
TCGCTGTATTGTGGGCGTGGATCCGGGGACCCATTATCTTTGGTGGACGC
CAAACCCTCTTGGGGGCGGGGTTGGCGAGAAGTGGTCGGGTGGGGTGGGG
TATATGGCACAACGGAACTAA
back to top