EsuBft105_19a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft105_19a-0001
Unique NameEsuBft105_19a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_100contigScaffold_100:456061..457132 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft105_19
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length87
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft105_19aEsuBft105_19aEctocarpus subulatus male Bft15bgeneScaffold_100 456061..457132 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft105_19a-0001EsuBft105_19Ectocarpus subulatus male Bft15bpolypeptideScaffold_100 456153..456323 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft105_19a-0001-exonEsuBft105_19a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_100 456061..456565 +
EsuBft105_19a-0001-exonagat-exon-19344Ectocarpus subulatus male Bft15bexonScaffold_100 456762..457132 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft105_19a-0001-exonagat-five_prime_utr-365Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_100 456061..456152 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft105_19a-0001-cdsEsuBft105_19a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_100 456153..456323 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft105_19a-0001-exonagat-three_prime_utr-583Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_100 456324..456565 +
EsuBft105_19a-0001-exonagat-three_prime_utr-584Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_100 456762..457132 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft105_19a-0001 ID=EsuBft105_19a-0001|Name=EsuBft105_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=876bp|location=Sequence derived from alignment at Scaffold_100:456061..457132+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AAAAGGTGTGTCCCACCCCAGCAGAAGTTGCTCGATATCACCACCCCAAC
TTTGGATCTCCGCCCAAAAGCCTTCCCATCTACTGGTGAGGGATGTCTGC
AGCTGGGAGCGCCTCCCAGGTGGAAAAACGCAACAAAGAGGAAAGTGAGG
AGGTGATTCGGTACCTCCTCGCTGGCAGCAAGAACAGGGTTTTGAGGTAT
GGTGCGTTCAAGGAAGCCGGCGAGACGTTCGGCTGCCACTGGGAGACGAT
CAAGAGGCTGTGAATGAGGTACGATACGCAGCACAAAGCGGGGGTCGCCA
GTCCACAGATAGAGAACCGGCGCAAGGGAAATAGCGGCCGGAGGGGCATT
CCCCTCGAAGAACTGAAGGAGCGCCTGCGTGACATCCCGCTGAACGACCG
CACCACACAGCGCCGCTTGGCTGCGGCGCTTGGGATTCCCAAAAGCACGC
TGCACAGGAATCTCAAGGCGCTCGGGCTGAGGGCGCACTCGAACGCGCTC
AAGCCCAGACTCTGAAACCAGCCTCCCAACAGCCCTGACACCAACATCCT
GGACCTGGGCTTCTTCGCGTCAATCCAGTCCCTGCAGGACCGCTACAAGC
CCAGGACTATCGACGACCTCGTCGGCGAGGTCGAGACCGCGTGGGAGAAG
GCGTCGCCGAACAAAGGTGGGCAAGGTGTGGACTTCGCTCAAGGCTTGCT
TGGAGTAAACCTTGCTCTGCGGCGGGGACCACACCTACAAGGTCCCTCAC
TTGAGCAAGGACAAGGCTGCACGGGCGGGAACGCCCATCCCACTGCGGTA
CCACATCTCCGAGGAGGCGTGGATCAAGGGCACACCGTCGCTCGCGGCGG
GAGAGGGACAAGGAGGAGCCGCGTAG
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protein sequence of EsuBft105_19a-0001

>EsuBft105_19 ID=EsuBft105_19|Name=EsuBft105_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=56bp
MSAAGSASQVEKRNKEESEEVIRYLLAGSKNRVLRYGAFKEAGETFGCHW
ETIKRL
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mRNA from alignment at Scaffold_100:456061..457132+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft105_19a-0001 ID=EsuBft105_19a-0001|Name=EsuBft105_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1072bp|location=Sequence derived from alignment at Scaffold_100:456061..457132+ (Ectocarpus subulatus male Bft15b)
AAAAGGTGTGTCCCACCCCAGCAGAAGTTGCTCGATATCACCACCCCAAC
TTTGGATCTCCGCCCAAAAGCCTTCCCATCTACTGGTGAGGGATGTCTGC
AGCTGGGAGCGCCTCCCAGGTGGAAAAACGCAACAAAGAGGAAAGTGAGG
AGGTGATTCGGTACCTCCTCGCTGGCAGCAAGAACAGGGTTTTGAGGTAT
GGTGCGTTCAAGGAAGCCGGCGAGACGTTCGGCTGCCACTGGGAGACGAT
CAAGAGGCTGTGAATGAGGTACGATACGCAGCACAAAGCGGGGGTCGCCA
GTCCACAGATAGAGAACCGGCGCAAGGGAAATAGCGGCCGGAGGGGCATT
CCCCTCGAAGAACTGAAGGAGCGCCTGCGTGACATCCCGCTGAACGACCG
CACCACACAGCGCCGCTTGGCTGCGGCGCTTGGGATTCCCAAAAGCACGC
TGCACAGGAATCTCAAGGCGCTCGGGCTGAGGGCGCACTCGAACGCGCTC
AAGCCGTACGAAGTGTGTGGAGGTTACGAAGTAGACCTACAAGGCGAAGC
TGATCGACGAGGTGATCCCCGCAATCAAAGAGATGTGGCCAGCTGCAACT
AGCTACAACCCCATCTTCCTGCAGCAGGATAACGCGAGGCCGCACCTCAT
CACTAGCGACGCGGACGTGCTGGAGGCGTGTACCTCGGATGGATTCGACA
GCAGACTCTGAAACCAGCCTCCCAACAGCCCTGACACCAACATCCTGGAC
CTGGGCTTCTTCGCGTCAATCCAGTCCCTGCAGGACCGCTACAAGCCCAG
GACTATCGACGACCTCGTCGGCGAGGTCGAGACCGCGTGGGAGAAGGCGT
CGCCGAACAAAGGTGGGCAAGGTGTGGACTTCGCTCAAGGCTTGCTTGGA
GTAAACCTTGCTCTGCGGCGGGGACCACACCTACAAGGTCCCTCACTTGA
GCAAGGACAAGGCTGCACGGGCGGGAACGCCCATCCCACTGCGGTACCAC
ATCTCCGAGGAGGCGTGGATCAAGGGCACACCGTCGCTCGCGGCGGGAGA
GGGACAAGGAGGAGCCGCGTAG
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Coding sequence (CDS) from alignment at Scaffold_100:456061..457132+

>EsuBft105_19a-0001 ID=EsuBft105_19a-0001|Name=EsuBft105_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=171bp|location=Sequence derived from alignment at Scaffold_100:456061..457132+ (Ectocarpus subulatus male Bft15b)
ATGTCTGCAGCTGGGAGCGCCTCCCAGGTGGAAAAACGCAACAAAGAGGA
AAGTGAGGAGGTGATTCGGTACCTCCTCGCTGGCAGCAAGAACAGGGTTT
TGAGGTATGGTGCGTTCAAGGAAGCCGGCGAGACGTTCGGCTGCCACTGG
GAGACGATCAAGAGGCTGTGA
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