EsuBft105_14a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft105_14a-0001
Unique Name	EsuBft105_14a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_100	contig	Scaffold_100:524453..525166 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FLM7
ProteomeId	EsuBft105_14
Protein domains	PTHR12979
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	71
Hectar predicted targeting category	other localisation
Evalue	1.48e-112
EggNOG OGs	KOG2471@1\|root,KOG2471@2759\|Eukaryota
Ec32 ortholog description	Tetratricopeptide-like helical domain
Ec32 ortholog	Ec-17_000560.1
Date last modified	2016-06-13
Date creation	2016-06-13
Preferred name	CNOT10
KEGG ko	ko:K07427,ko:K12607
KEGG Pathway	ko03018,map03018
GOs	GO:0000075,GO:0000077,GO:0000278,GO:0000288,GO:0000289,GO:0000956,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006977,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010608,GO:0010629,GO:0010948,GO:0016070,GO:0016071,GO:0017148,GO:0019222,GO:0019439,GO:0022402,GO:0023052,GO:0030014,GO:0030330,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031570,GO:0031571,GO:0032268,GO:0032269,GO:0032991,GO:0033554,GO:0034248,GO:0034249,GO:0034641,GO:0034655,GO:0035556,GO:0042770,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045786,GO:0045787,GO:0045930,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0071156,GO:0071158,GO:0071704,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0080090,GO:0090068,GO:0090304,GO:1901360,GO:1901361,GO:1901575,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902400,GO:1902402,GO:1902403,GO:1902806,GO:1902807,GO:1903047,GO:2000045,GO:2000112,GO:2000113,GO:2000134
Description	regulation of translation
COG category	O
BRITE	ko00000,ko00001,ko00199,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft105_14a	EsuBft105_14a	Ectocarpus subulatus male Bft15b	gene	Scaffold_100 524453..525166 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft105_14a-0001-exon	EsuBft105_14a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_100 524453..525166 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft105_14a-0001-cds	EsuBft105_14a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_100 524453..525166 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft105_14a-0001	EsuBft105_14	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_100 524453..525166 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_100:524453..525166-
coding sequence from alignment at Scaffold_100:524453..525166-

spliced messenger RNA

>EsuBft105_14a-0001 ID=EsuBft105_14a-0001|Name=EsuBft105_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=714bp|location=Sequence derived from alignment at Scaffold_100:524453..525166- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTACCCAAGCCCTTGCGTCATACACCGCGGGAAAGTATAGCGAGGC
CCTCTCCCACCTCTCCAACCTCTCGGTTGCACCAGGGAGCAGCGGTGACG
CCGGCGGGTCTTCCTCCGACGCCTCCAGTGACTTCCGGGCCCAGCACAAC
CTCGCCCTGAGCGAGCATGGCGCCCGCGGCTTCGCCGACCCGGCCAAGCT
CGAGTCAACGCTCCGCGCTATCCACTCCCGCCTGGCCAGAGCAAGCGCTA
GCGGTGACGGCAGCAACAACTACTCAGACGCCGAGGATGATGACGCCTCT
GACCAGGAGCAAGCCAACGCTTCCAGGCGAAGCAGCCGTGCCTTGACCGG
GGCGCTTGTGGTGGGTACCTCCGGCGGGGCCAGGGCGGCTGCGACGGCGG
TTGCGGGGCTGGCCGAGCTCGACGTCGACGCCTCCGTCCTCCTCTACAAC
CTGAGCGCCCTCCGCTTCCAGCAGAAACAGTACGGAGCCGCCCAGGCGGT
GCTGGAGCGGTTGTTCCTGCACATCGAGCCCCTGGACGATAGCCTCGCGA
TCCACATCTGCCTGCTGCTGCTGGATGTGCTGTGCCACTCGGCCAGGGGT
AACCTCCACACGGAGGACAACCTCAGGAGGTTCTCGGCGCAGACGGCGGT
GGTGCTCGCGTTCCTGGAGCGACCTCACGCGCTCAACTCTTCGAGCGGTG
GCGGCGATAGGTGA

protein sequence of EsuBft105_14a-0001

>EsuBft105_14 ID=EsuBft105_14|Name=EsuBft105_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=237bp
MATQALASYTAGKYSEALSHLSNLSVAPGSSGDAGGSSSDASSDFRAQHN
LALSEHGARGFADPAKLESTLRAIHSRLARASASGDGSNNYSDAEDDDAS
DQEQANASRRSSRALTGALVVGTSGGARAAATAVAGLAELDVDASVLLYN
LSALRFQQKQYGAAQAVLERLFLHIEPLDDSLAIHICLLLLDVLCHSARG
NLHTEDNLRRFSAQTAVVLAFLERPHALNSSSGGGDR

mRNA from alignment at Scaffold_100:524453..525166-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft105_14a-0001 ID=EsuBft105_14a-0001|Name=EsuBft105_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=714bp|location=Sequence derived from alignment at Scaffold_100:524453..525166- (Ectocarpus subulatus male Bft15b)
ATGGCTACCCAAGCCCTTGCGTCATACACCGCGGGAAAGTATAGCGAGGC
CCTCTCCCACCTCTCCAACCTCTCGGTTGCACCAGGGAGCAGCGGTGACG
CCGGCGGGTCTTCCTCCGACGCCTCCAGTGACTTCCGGGCCCAGCACAAC
CTCGCCCTGAGCGAGCATGGCGCCCGCGGCTTCGCCGACCCGGCCAAGCT
CGAGTCAACGCTCCGCGCTATCCACTCCCGCCTGGCCAGAGCAAGCGCTA
GCGGTGACGGCAGCAACAACTACTCAGACGCCGAGGATGATGACGCCTCT
GACCAGGAGCAAGCCAACGCTTCCAGGCGAAGCAGCCGTGCCTTGACCGG
GGCGCTTGTGGTGGGTACCTCCGGCGGGGCCAGGGCGGCTGCGACGGCGG
TTGCGGGGCTGGCCGAGCTCGACGTCGACGCCTCCGTCCTCCTCTACAAC
CTGAGCGCCCTCCGCTTCCAGCAGAAACAGTACGGAGCCGCCCAGGCGGT
GCTGGAGCGGTTGTTCCTGCACATCGAGCCCCTGGACGATAGCCTCGCGA
TCCACATCTGCCTGCTGCTGCTGGATGTGCTGTGCCACTCGGCCAGGGGT
AACCTCCACACGGAGGACAACCTCAGGAGGTTCTCGGCGCAGACGGCGGT
GGTGCTCGCGTTCCTGGAGCGACCTCACGCGCTCAACTCTTCGAGCGGTG
GCGGCGATAGGTGA

Coding sequence (CDS) from alignment at Scaffold_100:524453..525166-

>EsuBft105_14a-0001 ID=EsuBft105_14a-0001|Name=EsuBft105_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=714bp|location=Sequence derived from alignment at Scaffold_100:524453..525166- (Ectocarpus subulatus male Bft15b)
ATGGCTACCCAAGCCCTTGCGTCATACACCGCGGGAAAGTATAGCGAGGC
CCTCTCCCACCTCTCCAACCTCTCGGTTGCACCAGGGAGCAGCGGTGACG
CCGGCGGGTCTTCCTCCGACGCCTCCAGTGACTTCCGGGCCCAGCACAAC
CTCGCCCTGAGCGAGCATGGCGCCCGCGGCTTCGCCGACCCGGCCAAGCT
CGAGTCAACGCTCCGCGCTATCCACTCCCGCCTGGCCAGAGCAAGCGCTA
GCGGTGACGGCAGCAACAACTACTCAGACGCCGAGGATGATGACGCCTCT
GACCAGGAGCAAGCCAACGCTTCCAGGCGAAGCAGCCGTGCCTTGACCGG
GGCGCTTGTGGTGGGTACCTCCGGCGGGGCCAGGGCGGCTGCGACGGCGG
TTGCGGGGCTGGCCGAGCTCGACGTCGACGCCTCCGTCCTCCTCTACAAC
CTGAGCGCCCTCCGCTTCCAGCAGAAACAGTACGGAGCCGCCCAGGCGGT
GCTGGAGCGGTTGTTCCTGCACATCGAGCCCCTGGACGATAGCCTCGCGA
TCCACATCTGCCTGCTGCTGCTGGATGTGCTGTGCCACTCGGCCAGGGGT
AACCTCCACACGGAGGACAACCTCAGGAGGTTCTCGGCGCAGACGGCGGT
GGTGCTCGCGTTCCTGGAGCGACCTCACGCGCTCAACTCTTCGAGCGGTG
GCGGCGATAGGTGA