EsuBft105_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft105_10a-0001
Unique Name	EsuBft105_10a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_100	contig	Scaffold_100:587680..588613 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft105_10
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	93
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft105_10a	EsuBft105_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_100 587680..588613 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft105_10a-0001-exon	EsuBft105_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_100 587680..588613 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft105_10a-0001-exon	agat-five_prime_utr-360	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_100 587680..587806 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft105_10a-0001-cds	EsuBft105_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_100 587807..588067 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft105_10a-0001-exon	agat-three_prime_utr-570	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_100 588068..588613 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft105_10a-0001	EsuBft105_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_100 587807..588067 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_100:587680..588613+
coding sequence from alignment at Scaffold_100:587680..588613+

spliced messenger RNA

>EsuBft105_10a-0001 ID=EsuBft105_10a-0001|Name=EsuBft105_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=934bp|location=Sequence derived from alignment at Scaffold_100:587680..588613+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATATATAGCATCCACCCCCCCCCACACACACACAGACATCCACTGACTGC
TAGCGTGTACAGCAGTACTCGCACGCGAGAGTAGCAAGCAGCAACTTTTG
GCCCCTGTCACATCCATACCGAGACCAATGTCTCCGATGGTAGTAACAAC
CTCAGAGCACTTTATTGATACTACATCCTCGCGTGCATTCAGGCTGTCCC
TGTCCCAGAGCCGACTCCTGCCCCAGCCCCAGCCCCTGCCCCTCGCAGAC
CCGTTTGGGGGGGGCTCCCTGACGTCGGTGAACATTTGCGTGCCGGGGGC
GAGCAACCATCGCCAAGTGCCGGCAACGGGACGGGTGGTTGGAAACCCTG
GAACAGCAGTGCCATGTCAGTGGAACCTGCCGCCGTAGGAGAGCGGGGCG
AACTATCAACTCCGCCGTCGTCATTCTACGCCATGGGCATTCTCGGGGTA
CGTGGCTAGATCAGGGGCTTCGATGGGGTCGGGCTTGTTCCAATCCGAGT
TGGCATTGGATGGCGTTAGTTGATTGACGTCTATTTCACGCCGGCCGAGT
ACTTGGTTAGTGGCCACGTCCTAGCTGTACAGCAGACAGCAGCAGATATA
CTGCTGTCAATGTTCACCTACGTTCCTTTTTTTCTTCTGAAACATAATAT
GATACCTGCAAATTCGCGAGGATTTCACATTTTCCCGCCCCAACACCAAA
CAAGCCTCGCGTGGGTTTTCACTTTTGTGTCCACCTGTTGCGAACACCCC
CCGCCCCCCCTATCATCACTGTGCACGACCTCTCTTTGCCTTCCATTTGG
TGCTATCCAAACGTAAAATGGTATGTATGTTTAGGATCTGCTGTACCACC
GTGTTGGCGATTATCTTGACCTTATGCACGCGAGCATGATCCAGGACGAA
ACACCATCCAGCCCTAACTCTCATGCTGAACTTA

protein sequence of EsuBft105_10a-0001

>EsuBft105_10 ID=EsuBft105_10|Name=EsuBft105_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=86bp
MSPMVVTTSEHFIDTTSSRAFRLSLSQSRLLPQPQPLPLADPFGGGSLTS
VNICVPGASNHRQVPATGRVVGNPGTAVPCQWNLPP

mRNA from alignment at Scaffold_100:587680..588613+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft105_10a-0001 ID=EsuBft105_10a-0001|Name=EsuBft105_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=934bp|location=Sequence derived from alignment at Scaffold_100:587680..588613+ (Ectocarpus subulatus male Bft15b)
ATATATAGCATCCACCCCCCCCCACACACACACAGACATCCACTGACTGC
TAGCGTGTACAGCAGTACTCGCACGCGAGAGTAGCAAGCAGCAACTTTTG
GCCCCTGTCACATCCATACCGAGACCAATGTCTCCGATGGTAGTAACAAC
CTCAGAGCACTTTATTGATACTACATCCTCGCGTGCATTCAGGCTGTCCC
TGTCCCAGAGCCGACTCCTGCCCCAGCCCCAGCCCCTGCCCCTCGCAGAC
CCGTTTGGGGGGGGCTCCCTGACGTCGGTGAACATTTGCGTGCCGGGGGC
GAGCAACCATCGCCAAGTGCCGGCAACGGGACGGGTGGTTGGAAACCCTG
GAACAGCAGTGCCATGTCAGTGGAACCTGCCGCCGTAGGAGAGCGGGGCG
AACTATCAACTCCGCCGTCGTCATTCTACGCCATGGGCATTCTCGGGGTA
CGTGGCTAGATCAGGGGCTTCGATGGGGTCGGGCTTGTTCCAATCCGAGT
TGGCATTGGATGGCGTTAGTTGATTGACGTCTATTTCACGCCGGCCGAGT
ACTTGGTTAGTGGCCACGTCCTAGCTGTACAGCAGACAGCAGCAGATATA
CTGCTGTCAATGTTCACCTACGTTCCTTTTTTTCTTCTGAAACATAATAT
GATACCTGCAAATTCGCGAGGATTTCACATTTTCCCGCCCCAACACCAAA
CAAGCCTCGCGTGGGTTTTCACTTTTGTGTCCACCTGTTGCGAACACCCC
CCGCCCCCCCTATCATCACTGTGCACGACCTCTCTTTGCCTTCCATTTGG
TGCTATCCAAACGTAAAATGGTATGTATGTTTAGGATCTGCTGTACCACC
GTGTTGGCGATTATCTTGACCTTATGCACGCGAGCATGATCCAGGACGAA
ACACCATCCAGCCCTAACTCTCATGCTGAACTTA

Coding sequence (CDS) from alignment at Scaffold_100:587680..588613+

>EsuBft105_10a-0001 ID=EsuBft105_10a-0001|Name=EsuBft105_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=261bp|location=Sequence derived from alignment at Scaffold_100:587680..588613+ (Ectocarpus subulatus male Bft15b)
ATGTCTCCGATGGTAGTAACAACCTCAGAGCACTTTATTGATACTACATC
CTCGCGTGCATTCAGGCTGTCCCTGTCCCAGAGCCGACTCCTGCCCCAGC
CCCAGCCCCTGCCCCTCGCAGACCCGTTTGGGGGGGGCTCCCTGACGTCG
GTGAACATTTGCGTGCCGGGGGCGAGCAACCATCGCCAAGTGCCGGCAAC
GGGACGGGTGGTTGGAAACCCTGGAACAGCAGTGCCATGTCAGTGGAACC
TGCCGCCGTAG