EsuBft1059_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1059_4a-0001
Unique NameEsuBft1059_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_565contigScaffold_565:605220..609565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1059_4
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length81
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1059_4aEsuBft1059_4aEctocarpus subulatus male Bft15bgeneScaffold_565 605220..609565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1059_4a-0001EsuBft1059_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_565 609290..609565 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1059_4a-0001-exonagat-exon-7986Ectocarpus subulatus male Bft15bexonScaffold_565 605220..605428 +
EsuBft1059_4a-0001-exonEsuBft1059_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_565 607288..607361 +
EsuBft1059_4a-0001-exonagat-exon-7987Ectocarpus subulatus male Bft15bexonScaffold_565 608188..608346 +
EsuBft1059_4a-0001-exonagat-exon-7988Ectocarpus subulatus male Bft15bexonScaffold_565 609197..609565 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1059_4a-0001-exonagat-five_prime_utr-353Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_565 605220..605428 +
EsuBft1059_4a-0001-exonagat-five_prime_utr-354Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_565 607288..607361 +
EsuBft1059_4a-0001-exonagat-five_prime_utr-355Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_565 608188..608346 +
EsuBft1059_4a-0001-exonagat-five_prime_utr-356Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_565 609197..609289 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1059_4a-0001-cdsEsuBft1059_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_565 609290..609565 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1059_4a-0001 ID=EsuBft1059_4a-0001|Name=EsuBft1059_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=811bp|location=Sequence derived from alignment at Scaffold_565:605220..609565+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCGGTACAGACAGTGGGGGCTGTATCATCTACGCCAGACACACAGAGGTT
AAAGCCTATAGGCGGATACAACCCTTACAGCGTCGACGCCCTGACAGGGT
TCCTGCCCGTGGACCTTCTGGGGACCGACTACCTTCGCAGGGTGCCAGAG
GGTCCGTACAGCGTCTATTTGGCCGCAAGGTCCGTACAGGGGTAGCCATT
TGGCCACAGATGCACCGAGGCAATGGAAGCGTGCGACGACGGCGCCGAGG
ATGGCTACACGGAGGCCTACTTCCCAGATACTGATACCGAAGACGAGTCT
TTGATCACGCCCACGACGGCACCGAGGCCAGGCGAAACCAACCTTGACAG
CGGCTACACCTATCTTCCCGAGCCTAGCTCCTCGGCAGAACGTTCGTCGG
CAACGTTTTCGTCGGAAGCGCCTAGTTCAAGCCCCACGCCAGATTCTGCC
GGGCGCGTTGCGTGGCGTGCCGTTGGCACACATCCGTGCGTGGAGTAGGG
TCGTGTGACTGTACGTTGAAGCGTACGACGAGGGGATGGTGGACTACCTC
AAGGACCGCGAACTCAAGGAGTGGAACACGCACCGAGAAGCCACCCAGAG
AGGGGATGCCGTCGTGGAGGCAACGGGAGGGCGCAAAACACAAGCGGAAA
AGGACGCCGCGGCGGCGCAGGCGTTGGCGGCTTCGCAGGAATGCCGAACC
TTCTCCGTCAGGAGGGCGAAAAGGACATTCAAGAAGTGGAAGCAGGAAAA
GGAGAAGAAGCGGGCCATGGAGCAGGAGGGAGAGGAAAAAGAGGCCGAGA
ACGATGCGTAG
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protein sequence of EsuBft1059_4a-0001

>EsuBft1059_4 ID=EsuBft1059_4|Name=EsuBft1059_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=91bp
MVDYLKDRELKEWNTHREATQRGDAVVEATGGRKTQAEKDAAAAQALAAS
QECRTFSVRRAKRTFKKWKQEKEKKRAMEQEGEEKEAENDA
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mRNA from alignment at Scaffold_565:605220..609565+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1059_4a-0001 ID=EsuBft1059_4a-0001|Name=EsuBft1059_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4346bp|location=Sequence derived from alignment at Scaffold_565:605220..609565+ (Ectocarpus subulatus male Bft15b)
TCGGTACAGACAGTGGGGGCTGTATCATCTACGCCAGACACACAGAGGTT
AAAGCCTATAGGCGGATACAACCCTTACAGCGTCGACGCCCTGACAGGGT
TCCTGCCCGTGGACCTTCTGGGGACCGACTACCTTCGCAGGGTGCCAGAG
GGTCCGTACAGCGTCTATTTGGCCGCAAGGTCCGTACAGGGGTAGCCATT
TGGCCACAGGTGAGACTAGTGTACCATCATTGGCAAACATTGTAAATTAA
TCGATTCTTTGTATCAAGACGGGTGCCTTGGCCACTGTGTAGCTTGCTTC
GTCTTTCTTTAAACTAGGCTACCAGAAGAAGAGTACCAATGCTACGGCCT
TAACTGGGGGCGTAGGATTTCGGGATCCTCGATGCCAAGCGCTTCTACTG
ACTGGTGCAAAACCGGAAATTGCACACAGGCGCGCCATAAAGGAGCCCAT
CCGAAACCGCAGGAACGCCTTGCGTTGAAGTATGTGTTCCCCCGGTCGCC
TACTACTTGTGTACAGCAAATATGAACGTTGGGCACAAAAGCATGTCGAA
GACGTGCATAGAGAAACGTCCTTTGCACTGCTGTATTGTGGTTTAGACCG
ACCGCAACGGTAGCAAAATGCGGCGCAACACATGGTGGTCCCCACCAGGT
GCTTGCTGCTTCGACCGCCAACTCCTGCTTCGTTCTACGCAAACAAGTCG
GAGGTTGCGCCTTATCTCGAAATCAGCTCATCATATATTGGTGGGATCCG
ACCTTCCTGGTGAAAGCTGTCTGTACCGAGTCGCAAGAGCTGAGGCAAAC
TTTTCTTTTTCGCGCTTCCCACAACATCCACTCTTATGAAAAATGACGCA
GGCGTGTGGGGCGGACGGCGCACACGACACGTATTGCCTGAACGCCTGCA
GTGGCATGGAAGCCGTGATGCCAGACGTGGGCGAGTTCAAGTAGTACTAG
ACTACTTGGTAAGAGGGCGAAATTCCGACCCCTATATTGTGCTGTACCGT
AAAGTTGCGAGTCAGCGCACAGGCAGGGGTGCGAACGATTTTCAAAGCGT
AGTTTCTCCTCAAGCAGGAGGGTGCGAGCGCCAACAGATGTTTGTCAGGA
AAGCTCTTGATGAGATATTTCCAAAACCGCCCTTTTCAACAGTGTTAACC
TCCTGGGTGTGGAGAAATTACGCTTTGAAAATCGATCGCACCCCGGTGCG
GTGACTCGCAACGCTACGGTATGTTACAAGCTTCCGCGTTTTCATTCGCG
ATGCTCGGCGGTAGCGTGGACCCTATTACTGTACCTTCAAACCTGAACCT
ACGTTGTAGTTCGCTCGCTCCTCGAACTGCGTTTCGACTGTGGTGATCGG
AAGGGCACAACGGCGTTCTAACCCTCACTCTGCGTTGTACTTTTAGTTTT
TTAGCAGAGCGAACTGCGTTCGTTACGTTGTCGTCACTTCTATTCCCCGA
CCACGCACATCCCACGGTCTGTTCTCTCGGACACCTCGACGAAAACCTGC
AGACGTGCGGTTTCGACGAAGGGTTCTTCCCTGGTGCCGTGAACTGCTTC
CGTGGCTGTTGTCCGGACGGCGTCAAGTGAATGCTGGTCGCTCTGCTTTC
GGTTTGCTTGAGTGCGTACAAATCATGTTCCCTCTTGCTCTTCTTGTCGT
TAGTGCTCTACAGTAGTGCGGTGCAATTCGTGCGTGTACCGCTATTGGCA
AGGGCTTGTTTCGGCAATGTATTTTAGCCTTAGCCGCACTTTCTTGATCA
TGCCTTATTGAAGGTTGTTTTACTGCGACGCTCCTCCCTCGTGTAGGTTT
GAAAGCAAGGTAACCATGTACGCTCCGCCGGGTAGGGTTGGAACCAAGGT
AAAGTGACGGGGTAGTATTGCTCGTGAAACGCGTCATGACTTCATGGTTA
AGAGGACTACTCTCTCACTCAGCCCAAACGAGAACGTCTTTCCTTTCAGA
GGACACAACGTGCTCGAACTTGAGTAGTACCGATTCTTGTATGAAGCGAG
TCCTCTCACTAATCCCGGTTCACCATGCAGATGCACCGACTTCTCTCTAA
TCCCGCTTCACCGTGCAGATGCACCGAGGCAATGGAAGCGTGCGACGACG
GCGCCGAGGATGGCTACACGGAGGCCTACTTCCCAGATACTGGTATGATC
GTGACTGAACATTATGACACTGACTTCCTCGAGGGGGACGACAAGCTCTA
CATTTACACGACCACTACCGTCGACTGCCAAGCCTACTACAACAGTCAGA
AAGTTCAATTTTTCCGAAGTATATGCAGTTGACACCAGCTGCTGTTGGAC
CACCTGTTGTGTGTGATAGTACAACAATCGGATGTTGCTTGAAGCGCCAA
AGAGAATGGGGGCATAGTGGGCAGGGTCTTGTTTAGTAGTTGCGGGGCCT
GTCGTGCTTTGCAGATTTCCTCCCAACAGTGTTAGAGTGAGGTGACGGAC
GATCTAACGTCCACCCTCACGCTTGAGGCATGAGGGGAAAGGGAAGCCGG
TGCTACCACGTAGAAGAAAAATCAAAGGGCGGGGTCCGGAAACGACCCTT
AAAACGGCAGAGTTTGTCATTTTCGCTCCCGCCGGGAAACTTCATTATTA
CAGAAGTACATGCCATCTACGCGCTCGCACTGTGGTCGTGCATCGGCCCA
CTCCCCAACTCTTCACCGACACGGAGGAGCTTTCAACCTTCGGGCGTTCG
CATCCATCGACCCCTTTCACCTAGCACTCAACAGAGACCACTTGTAGCAA
TAACCCCTCGCTTCTTTCCCCCCGCACCAGAAATCACCCCGAGCCCTCCG
CTATTTCCACGAAGCTTGCGCATCCATCGGCCTCTCATGCCTAGCACTCA
ACAAGGACCACCGACAACAGTAGCGCCTCGCTTATTTTCCGCCGCACCAC
AATCCACCCCTATCCCTCCCGCGATGCACGCGTCGGTTTCATCTCCTCCT
TGCTGTCTTTCTGTGTAGATACCGAAGACGAGTCTTTGATCACGCCCACG
ACGGCACCGAGGCCAGGCGAAACCAACCTTGACAGCGGCTACACCTATCT
TCCCGAGCCTAGCTCCTCGGCAGAACGTTCGTCGGCAACGTTTTCGTCGG
AAGCGCCTAGTTCAAGCCCCACGCCAGGTATGGTGTCATTGGTTAGCCTG
CCGGGCCAGGCTGCGACAGCTTTGGCGTGCAGCAATTCGCTAGCGTGCCT
TGCCACACTGTGGGGGCACTGTGAAGGATCCACCCAAGCCTCAGAAGTTC
TTGAAACTTTTCCAGCATTTAGGGTCGTGTTTGAGTGCGTTGTGTTCAAG
ATACCGCGGGTCGGATGTCCCATTGTACGTATAGTCCGTGCACACCAAAA
AATCCAAAATTTTCCCAGCACAAATGACAACTTTTCTCTGCCCACAGGTG
GTTGTTCCGAAATCTGAAAGTACCGGAAAACGCCCTGTTTGCAGGCGCAT
CGCGTGACGGAGAGTTTTTTTTTTGTTTCTTGACTTTTTATCGGCGCAAA
ACCGGAAAAAATTGAATTGTTTTCGCAGGGGTGTGTTCTTTGCCGATTCG
AAAAAACTCAACGGATTTGAACAGATGTCGGGATTTGCCAGGTCGGTATT
TTTTTTTTGGTCAAAATATTGTGAATTCACGGAGATATCAGAGAAAAACC
GGATCTAGAGGGCTAACTTGTATTGTTTTTCGGGGGATAACTAACCGACC
GATTTCAAAATAAACAGCGGCAAACGATTCCTCTCCTCAATATCTAGGTC
GGTATTTGTGGTTTTTGTCGGGAAAAATCTGGTTTCCGAGATATTCAACT
TTTTGTTGTGCCGTCCCCATGGGAGATTTTTTTCGTTGGGCAAGACGAGA
CGAACACACAACAAACACGCACACGTGGCGGCCTACCACCCTGAGCTTAA
CGCTATTGAGCGGTACTGGGGATACGTCAAGCACTATCCGTCTTCACTGC
GAGAACTCCCTCACCCACATGCTCCAGATTCTGCCGGGCGCGTTGCGTGG
CGTGCCGTTGGCACACATCCGTGCGTGGAGTAGGGTCGTGTGACTGTACG
TTGAAGCGTACGACGAGGGGATGGTGGACTACCTCAAGGACCGCGAACTC
AAGGAGTGGAACACGCACCGAGAAGCCACCCAGAGAGGGGATGCCGTCGT
GGAGGCAACGGGAGGGCGCAAAACACAAGCGGAAAAGGACGCCGCGGCGG
CGCAGGCGTTGGCGGCTTCGCAGGAATGCCGAACCTTCTCCGTCAGGAGG
GCGAAAAGGACATTCAAGAAGTGGAAGCAGGAAAAGGAGAAGAAGCGGGC
CATGGAGCAGGAGGGAGAGGAAAAAGAGGCCGAGAACGATGCGTAG
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Coding sequence (CDS) from alignment at Scaffold_565:605220..609565+

>EsuBft1059_4a-0001 ID=EsuBft1059_4a-0001|Name=EsuBft1059_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=276bp|location=Sequence derived from alignment at Scaffold_565:605220..609565+ (Ectocarpus subulatus male Bft15b)
ATGGTGGACTACCTCAAGGACCGCGAACTCAAGGAGTGGAACACGCACCG
AGAAGCCACCCAGAGAGGGGATGCCGTCGTGGAGGCAACGGGAGGGCGCA
AAACACAAGCGGAAAAGGACGCCGCGGCGGCGCAGGCGTTGGCGGCTTCG
CAGGAATGCCGAACCTTCTCCGTCAGGAGGGCGAAAAGGACATTCAAGAA
GTGGAAGCAGGAAAAGGAGAAGAAGCGGGCCATGGAGCAGGAGGGAGAGG
AAAAAGAGGCCGAGAACGATGCGTAG
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