EsuBft1056_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1056_3a-0001
Unique Name	EsuBft1056_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_427	contig	Scaffold_427:273283..278060 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	6500.XP_005092035.1
ProteomeId	EsuBft1056_3
Protein domains	SSF56672
Protein domains	PTHR19446
Protein domains	IPR000477
Owner	apollo_admin@sb-roscoff.fr
Note	line-1 retrotransposable element orf2 protein os:homo sapiens pe:1 sv:1 [Automatic annotation]
Nb exon	4
Max annot lvl	33208\|Metazoa
Length	1006
Evalue	4.08e-21
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota,39TZY@33154\|Opisthokonta,3BI15@33208\|Metazoa,3D94V@33213\|Bilateria
Date last modified	2016-06-15
Date creation	2016-06-15
Description	Ribonuclease H protein
COG category	S

Cross References

External references for this mRNA


Database	Accession
EC	2.7.7.49
EC	3.1.21.4
GO	0003964
GO	0009036
GO	0032199
GO	0000737

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1056_3a	EsuBft1056_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_427 273283..278060 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1056_3a-0001	EsuBft1056_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_427 273484..277978 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1056_3a-0001-exon	agat-exon-24488	Ectocarpus subulatus male Bft15b	exon	Scaffold_427 273283..273738 +
EsuBft1056_3a-0001-exon	EsuBft1056_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_427 274306..274474 +
EsuBft1056_3a-0001-exon	agat-exon-24490	Ectocarpus subulatus male Bft15b	exon	Scaffold_427 276398..276402 +
EsuBft1056_3a-0001-exon	agat-exon-24489	Ectocarpus subulatus male Bft15b	exon	Scaffold_427 277685..278060 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1056_3a-0001-exon	agat-five_prime_utr-334	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_427 273283..273483 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1056_3a-0001-cds	EsuBft1056_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_427 273484..273738 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1056_3a-0001-exon	agat-three_prime_utr-541	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_427 277979..278060 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_427:273283..278060+
coding sequence from alignment at Scaffold_427:273283..278060+

spliced messenger RNA

>EsuBft1056_3a-0001 ID=EsuBft1056_3a-0001|Name=EsuBft1056_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1006bp|location=Sequence derived from alignment at Scaffold_427:273283..278060+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCTTCCTGCAGCTCGGCGCTTCATCGGCAGCCCAAGACCACGAAGGGAAT
TGAATGTGCGTTCGGAACTCGGAACCGTGATGAGGCACTGGAGGCGGTCG
TGGACTTATTGCGACAGTGCAGAGCGGGCAATACAGCCATCTCTGACAAC
GAGTCATCCACGATCAGGCTCCCGCGTGTAGATTTCTGGGTCTCGGCCGG
GATGGGAATGGTAAGCTTGGCAAGACGAGGTCGGAGTTGTATGCTCCCGG
CTCCGGCTGCCTGGACGTGGCGTCGTCGTCGTTGGCTGGTCACAGACTTC
GATCGAGAGCTGTCGAGATCACGAGGAAAACCGTTAGCTACTGACAAGCG
CTGTCTCGGAAATGTTGGACGGTGGATCTTCACAAGCGCGGGTGCAGCTG
AAGAATGTTGGGAGTGTTGGTGGCATGCCAAGAGGATGGGAGAGGGCTTG
AGAGAGAACTCTCCGGCCAGAAGTGTTGCGTGTCGAAGTCAACCGGCTAT
GACGCACAGCAATAATAGGCGCCCATACCAGCCAGGCGTACGAGCTTTTT
TGCCGATGGGAAGAAGCGTTGATTTTGGTGGAGCACCTCTCTACTTCCGG
GCGGGTGAGCGGCCTGCTACGCAGGTAGAGGAGCTGGGGGGGCGGAGAAA
GAAAATACCGCTCTACATGTGCTTCGTCGACTTGAACAAGGCGTATGATT
CGGTGGACCGAGAGATGCTATGGAAGGTGCTGGCCAGGGCCGGGATTCCC
GCGAAGCTGATCGAAGTCATCCGCCAATTCCACGATGGAATGCGGGCCCG
GGTGCGCATGGACGACGGAGAACTATCGGACTGGTTCTTCGTGACACAGG
GCGTGCGACAAGGATGTGTGCTATCCCCACTGCTATTCAACAACTTCTTC
GCCGAGGCCCTCGAGGTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNN

protein sequence of EsuBft1056_3a-0001

>EsuBft1056_3 ID=EsuBft1056_3|Name=EsuBft1056_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=241bp
MGMVSLARRGRSCMLPAPAAWTWRRRRWLVTDFDRELSRSRGKPLATDKR
CLGNVGRWIFTSAGAAEECWECWWHAKRMGEGLRENSPARSVACRSQPAM
THSNNRRPYQPGVRAFLPMGRSVDFGGAPLYFRAGERPATQVEELGGRRK
KIPLYMCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRAR
VRMDDGELSDWFFVTQGVRQGCVLSPLLFNNFFAEALEVVX

mRNA from alignment at Scaffold_427:273283..278060+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1056_3a-0001 ID=EsuBft1056_3a-0001|Name=EsuBft1056_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4778bp|location=Sequence derived from alignment at Scaffold_427:273283..278060+ (Ectocarpus subulatus male Bft15b)
CCTTCCTGCAGCTCGGCGCTTCATCGGCAGCCCAAGACCACGAAGGGAAT
TGAATGTGCGTTCGGAACTCGGAACCGTGATGAGGCACTGGAGGCGGTCG
TGGACTTATTGCGACAGTGCAGAGCGGGCAATACAGCCATCTCTGACAAC
GAGTCATCCACGATCAGGCTCCCGCGTGTAGATTTCTGGGTCTCGGCCGG
GATGGGAATGGTAAGCTTGGCAAGACGAGGTCGGAGTTGTATGCTCCCGG
CTCCGGCTGCCTGGACGTGGCGTCGTCGTCGTTGGCTGGTCACAGACTTC
GATCGAGAGCTGTCGAGATCACGAGGAAAACCGTTAGCTACTGACAAGCG
CTGTCTCGGAAATGTTGGACGGTGGATCTTCACAAGCGCGGGTGCAGCTG
AAGAATGTTGGGAGTGTTGGTGGCATGCCAAGAGGATGGGAGAGGGCTTG
AGAGAGGTATGGTGATCTTGCTACATAGCAGGACGTTCTTCGGACGGTGA
TGAGGCTTGCTGTGAAAAACAATCAATTCGGAACCGTATGCATATGTCGC
GACTTATTGTTTGGAGAGCTATTTTGCGTTGCACTGATTCTGTACTCAAT
AAGATCGTGTTATCTTTCCCATTCGCACTGTGTGCAAGGTCAGTGTGTCT
TGCTGCCGTTGTGAAGCAAACGGCCCGCAGCGCGCTTGGGTTTGGCGTAG
TCGCCCTCGTCATGAAAATTCGTTGAGACACATTCCAACCTTGAGCGTAC
CACACCGTTCCCGGCCCGTTCATTCTACTTCGGTGTACGCAACCCTTGTC
TCTTCGGCAGTGTTCCACTACCTGAAATCGGGCTCCAGGGTCTGAAAGTG
TGCATGCACGTGCCTGTCGCATGAGAGCACCTCCTTTGGTTGTCTGTGAG
TGGGGACCGATGTTGACGAAGTTTCGAAATATTTGCCAGCAAATCTTACC
GAGATGCTGGTTCTCACCAGGTGACACACGTACCTTGTGCTCTTGACTCC
CATTATTACTTTTGCCAACCCAGAACTCTCCGGCCAGAAGTGTTGCGTGT
CGAAGTCAACCGGCTATGACGCACAGCAATAATAGGCGCCCATACCAGCC
AGGCGTACGAGCTTTTTTGCCGATGGGAAGAAGCGTTGATTTTGGTGGAG
CACCTCTCTACTTCCGGGCGGGTGAGCGGCCTGCTACGCAGGGTAAGAAG
TGGTGCTCACCAGGGCCTGGCACCAAATCAAAGTTGTACATGAAATACGT
TAATTACGGGGGGGGACTGGCCTTCACTTTGTTTCTTCTCACCGCCTAGT
ATGTTCGGGTCTATGGGAAAATGTCTATTATAAAAACGAACGGTGTTCCA
GAAACTGCTGATGCTGTGGGTGGACCCTTTGGTACTTTGCCGAACTCATG
ATGCAGACAAGACCCGGATTCTGACGGATGGGCTACATGTGTTCGTCGGG
AACGGAGATGAACTTGGCTCTCTCTGCGAGCGATGAATCAGACGTGNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCCCCCCCCCCCCCCCCCCCTCCCATGGTCACTTTTTTGTTG
TGCTTGAGAACAACGCGGTAGCTGTTTTGTTGTGCATAAGCAAGAAGGGA
TGGTATCATCGAGATATCTGACCGTAGCAGGGCCGGTCGGTGTGTTCGTT
GACGATGTAGTAGGTGGTTGGGGGTGCTCGGCAGGAGAGTACTGATCTAT
GGGGTCTCCGTGGTGTTACGCGGTAGATCGTTTGGATGCGATGAGCATGA
CGCACGGGGCCCTTCTTGTCTTGCCTCGCTCATGTCTGCGATTCGTCAGC
AATGAAGAGCTTGTTGGGTCAACCTTCTTTCTTTTCCGGCCTTTGACGAA
AAGCTTGCTAGCTGCTGCACCCAAATATCCCATCAACACGGGAAAAAAAC
ATGATCCGTCAGTCAGTCCACTCGACACCGTAAACATCCCAAAACTTGAG
GGGCATCTGCCTCTCTCTGGCGTTGGACGTCCCACGGATACGTCATGTCC
ATGGACATTTCCACGGTCATCTACGGGAGACTTCCCCACGTATGGCGGCC
ACGGATGGCGGCTAAATGTCCACGGGCGTGCTTGCGCGGAGATATCCACG
AACGAACGCGTCCGCTCACAATTTGTCCGTGGACGCCTTAATAAACAAGA
AAAACTCGGGGGCACGCTCTACTTATAATAGTCACCAAGAGACAAACATG
CATACATCCACAACAGTCAGTTATAGATGGACGGCCACGGACGTCTTCAT
AAGCGTTCATGGACGGACGCCCATTGACAACCACGGACTGACATGTCTGT
GGATATCCATCCGTTCAGGACGGACGTGGCCGTTGATGTCCATGGACGGA
CACGTCCACCAAAGGGTCAGATAGTGTTACGTACCATAGTAATAGTTGAT
GACCCGTTCAGTGATACCCTATGCCCGATCACGAGACGACAGAGTTACAA
TCATTGTGGCACGTATTTCACTGTTGTACATAAATGGACACATCAATTGT
GAGCCTTGCTCAAAGTAGAGGTAATAGATGTTTATGGGTGTGTCCAAGTA
TTGTAAGTGGGTCGGTGGATGTCAAAAGAGTCACAAGCAGCAGCAGCAGT
GTGGTGTCACCCAAGATCCTTCTGTGAAGAAGACCACGCAAGCGACTGGT
CAAACCAGCCGACTCCAACTGCTGAGAACACCTCCACCACAGCCTAGTTT
CCTCGTTGGTATGCCGACCACACTCATCAGCTCAAACTCTCGGTCTGGTC
GTCCGACCGCCGAGTCCTGTGGTCTCGGTGGGGTGAAGTGTCAAGTCTGG
GTTGTTATTGTGGTTGTTGTTGTTGTTGTTGTCTTCACATTAGAACCGTT
CCGGTCTCCGCTCAGTACCTTCTAATGTCCGTACTGGTCCAACTGACGCG
GACGCCTTCCGTGGTCACAATCTAACTGCCCCAAAGGCGGTACATACAAC
AGAAGTCCTCCCGCTCGCGATTTGTTTTTCTACCCAAACGAACAAGGAAG
AAAAAGAAAAAGGGTAGTCTTTCTGTGATGCTATGGTTACTTTCTAAAAA
AGAAAACAACTAAGGGAAAAGGTTCCTAACCGAGGTACAGACGATCGACC
CCGGTCAAAACAGGGATGAAATAAATGTAAAAATGATCCGGTTTGGATCA
GCCCTGAGGTGAGTAAGGAGGAGGTGTAATAGTATATATTACCCCTGTCT
GAGTGATGAGTAGTTGAGTTTTCTTGACATTGAACTCGTGTCAGTTGCTT
ACATTCCCGATATCTACCAGAGAGGAAGACTCGGTCCGTAGTCACAAAAT
ACTAGATAGAGCCATGAAAAGAAGATGATCTAAAGAACACGCACACTATT
ATTATTGTTACCAGAAAGAATGGCACAAGCCCGAAGAGGTACACCTACCT
ACTAGGTCCCGAGAGGCTGTTGGAAATGCCTACGCATATCCTGTCTTAGT
CAATGTTTAGTAGTACTGCTGATGTAGACGAATGACATATGTGTTATCTA
TGTATCGGTTGGAACGTAACGTATGCGGAAGAACTAAAAGCTGTACGTAG
CCCGTAGCTCGTTCTGTCGTTCGGTGCACGACCCCACTCTTTGGGATCTC
TCTCGGTGATCTATCGGACTGTCTGGATACTTTAGCTGTCCTTGTCGTAC
CTTGGATGCTGCTGGCATACTGCCTGGACTACAACCGTCTGTCGGGTGTA
TCTGTCTGTGTTGGCCACGTAGGCGCCGTGTTTACAACATCTCTCCATCT
TTTTCTGCACTGAAGTACCGTCGACATGCTGTTCGTCGTGCGCCGCCTCC
AGGAGCTGGGGGGGCGGAGAAAGAAAATACCGCTCTACATGTGCTTCGTC
GACTTGAACAAGGCGTATGATTCGGTGGACCGAGAGATGCTATGGAAGGT
GCTGGCCAGGGCCGGGATTCCCGCGAAGCTGATCGAAGTCATCCGCCAAT
TCCACGATGGAATGCGGGCCCGGGTGCGCATGGACGACGGAGAACTATCG
GACTGGTTCTTCGTGACACAGGGCGTGCGACAAGGATGTGTGCTATCCCC
ACTGCTATTCAACAACTTCTTCGCCGAGGCCCTCGAGGTCGTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNN

Coding sequence (CDS) from alignment at Scaffold_427:273283..278060+

>EsuBft1056_3a-0001 ID=EsuBft1056_3a-0001|Name=EsuBft1056_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=723bp|location=Sequence derived from alignment at Scaffold_427:273283..278060+ (Ectocarpus subulatus male Bft15b)
ATGGGAATGGTAAGCTTGGCAAGACGAGGTCGGAGTTGTATGCTCCCGGC
TCCGGCTGCCTGGACGTGGCGTCGTCGTCGTTGGCTGGTCACAGACTTCG
ATCGAGAGCTGTCGAGATCACGAGGAAAACCGTTAGCTACTGACAAGCGC
TGTCTCGGAAATGTTGGACGGTGGATCTTCACAAGCGCGGGTGCAGCTGA
AGAATGTTGGGAGTGTTGGTGGCATGCCAAGAGGATGGGAGAGGGCTTGA
GAGAGAACTCTCCGGCCAGAAGTGTTGCGTGTCGAAGTCAACCGGCTATG
ACGCACAGCAATAATAGGCGCCCATACCAGCCAGGCGTACGAGCTTTTTT
GCCGATGGGAAGAAGCGTTGATTTTGGTGGAGCACCTCTCTACTTCCGGG
CGGGTGAGCGGCCTGCTACGCAGGTAGAGGAGCTGGGGGGGCGGAGAAAG
AAAATACCGCTCTACATGTGCTTCGTCGACTTGAACAAGGCGTATGATTC
GGTGGACCGAGAGATGCTATGGAAGGTGCTGGCCAGGGCCGGGATTCCCG
CGAAGCTGATCGAAGTCATCCGCCAATTCCACGATGGAATGCGGGCCCGG
GTGCGCATGGACGACGGAGAACTATCGGACTGGTTCTTCGTGACACAGGG
CGTGCGACAAGGATGTGTGCTATCCCCACTGCTATTCAACAACTTCTTCG
CCGAGGCCCTCGAGGTCGTNNNN