EsuBft1055_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1055_7a-0001
Unique NameEsuBft1055_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_61contigScaffold_61:59561..62088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FP99
ProteomeIdEsuBft1055_7
Protein domainsTMhelix
Protein domainsIPR002048
Protein domainsSSF47473
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsIPR011992
Protein domainsIPR018247
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Noteprotein tic 20- chloroplastic os:arabidopsis thaliana gn:tic20-v pe:2 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length1741
Hectar predicted targeting categoryother localisation
Evalue3.52e-144
EggNOG OGs2BYWW@1|root,2QUSD@2759|Eukaryota
Ec32 ortholog descriptionPObg2, plastid Obg/CgtA-like GTPase 2
Ec32 orthologEc-08_000840.1
Date last modified2016-06-13
Date creation2016-06-13
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0009507,GO:0009526,GO:0009528,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009706,GO:0009941,GO:0016020,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042170,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
Descriptionprotein transport
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0005509
GO0044424
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1055_7aEsuBft1055_7aEctocarpus subulatus male Bft15bgeneScaffold_61 59561..62088 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1055_7a-0001EsuBft1055_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_61 59847..61557 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1055_7a-0001-exonagat-exon-8636Ectocarpus subulatus male Bft15bexonScaffold_61 59561..60119 +
EsuBft1055_7a-0001-exonagat-exon-8637Ectocarpus subulatus male Bft15bexonScaffold_61 60771..61022 +
EsuBft1055_7a-0001-exonEsuBft1055_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_61 61159..62088 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1055_7a-0001-exonagat-five_prime_utr-331Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_61 59561..59846 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1055_7a-0001-cdsEsuBft1055_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_61 59847..60119 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1055_7a-0001-exonagat-three_prime_utr-539Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_61 61558..62088 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1055_7a-0001 ID=EsuBft1055_7a-0001|Name=EsuBft1055_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1741bp|location=Sequence derived from alignment at Scaffold_61:59561..62088+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCTCCACCCGCTGCTATCTGTCAGACAGCTACGCCCCTTCCACACATTAG
ACATGTACTCCCTCCGTTCCTACGAATCCACCGCACGTCTACGGCATGGC
ACCAATCACCGCATCCATCCTTCCCCTTGTCGCCCTCTCCCTTGGCTCCA
CCACCGCCTTCGTTGCTCCCACCGGTCGTGGCGTCTCGTGGTCCCTGGCC
AACCCTCAGCGTGCCGTCAGGTCGTCCACATCGACCGTATCCACGCGCTA
CAACGCCCGCCGCCCGTAACCAGCAACAACGGCGACATGTTCTCTCCGCA
TGGTGAGCGAGGTCGCGGAGGAGAAAGCGGCCAAGCTCCGAGAGACCGCG
GCCGCCTTCCGCGCGGAAGCTGCCGAGCTGGAGGAGAAGCAGGCGCGAGA
GCGACGCGAGAATGCCCGGCGATCTTCAACACCTTCGACTCCAACAAGGA
CGGATCGGTGGACATCGCCGAGCTCAAGGCAGGACTCGAGAGCCCGCTGC
GTCGGGGCCTCACGAAGACGTTGCAGGCTCGCATGGGGCGGAAGCCGTCG
AAAGAAGAGGTGGACGAACGCATCGCCGGCCTCCCGGGAGGTACCCTCTT
CCCCGACGAACTCGCACTCAAACTCATCCAGACCTACGACCAGAATGGGG
ACGGCCTGCTGCAGCTGTCGGAGTTCGCCCCCACCGAGGAGCTCAGGACG
AGGCTCGAGGACCTCTTCAGCCAACAGCGGGAGGACGAGCGCGTGGCGCG
CATGGAGGAGCGCCAGCGCCGGATGGATGACAAGATGAGGCCGGACACGG
GGGCGGTGGTGACGGCGTGGGCGCAGCCGCTGGCCGCCGTGCTGCTGGCG
CTGCGGTCCGTGCCGTTCGCGACTCTGATCGGGTTCTTCAGCCTGTCTGT
CCATCGGCTCCGCAACCCGCAGGTCAACAAGCTGGTGAGGTTCAACACGC
AGCAGGCCATCAACGTGGACATCGCTCTGATCTTGCCGGGGGTGGTGGGT
GCGATCGCGGGGGCGGTGTTGGGGGCGGACGCTGTGAAGCTGGCGCCTCT
GGCGAACGCGGGGTCGGACGTTGTGTTTGTGGCGTTGTTGGCGGCCGTGG
CGTACTCCGTGGGCACTTCGGCGACGGGGTCGTTCCCGAACAAGCTTCCG
TTGTTGGGGCGTTTGAACCGCGAGAACCCCGAGAACCAGCAGGAGGGCGG
CGAGGAGTAGAGGAAAACAAGTGGTTTGTTGCTATTGTTGTGAGTTCGAA
TGTAAGGCGGTGTGTCTGAATACGTTGTGTCCTTCTTTGTTTCCCCGATG
AATGCCCACGACTTCGCCGTCTTTTTTTTCTCGGTTGGTTCCGCTTCGCC
AGAGATGGGTTCGGAGGTCATTCATCCTGTATTCTGTGTTTTTTTTCGTG
GTGTGTTGTGTTTGTCGGTACTGTAAGTGCGGAAGAGATGCGTGATAGAA
GTATAATATTTTCGAGTGTCCTGAAGTCTTGCAGGTACCGTGTCTGCGTT
GTGGTAGTGAGTGAATGCGATGTATTGATTGTCCGTGACTGGGGTCGTGG
TGTGCTGTAAGACTTGTCTTTGGTGCCCCATCATGATGGTCTTCAGTCCA
AACTGGGTTGCCTTTTGATGCTGGCGGCTGGGACACGGCCGAGTGTCGGT
TCGTGTCAAGGAGTGTCTGCCAGTTCGGCCTGTGGTGCGTGACGTTACTT
TGACGCTGTGTCAAAGAGAACAAAATCGAATGATGATCAAG
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protein sequence of EsuBft1055_7a-0001

>EsuBft1055_7 ID=EsuBft1055_7|Name=EsuBft1055_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=307bp
MFSPHGERGRGGESGQAPRDRGRLPRGSCRAGGEAGARATRECPAIFNTF
DSNKDGSVDIAELKAGLESPLRRGLTKTLQARMGRKPSKEEVDERIAGLP
GGTLFPDELALKLIQTYDQNGDGLLQLSEFAPTEELRTRLEDLFSQQRED
ERVARMEERQRRMDDKMRPDTGAVVTAWAQPLAAVLLALRSVPFATLIGF
FSLSVHRLRNPQVNKLVRFNTQQAINVDIALILPGVVGAIAGAVLGADAV
KLAPLANAGSDVVFVALLAAVAYSVGTSATGSFPNKLPLLGRLNRENPEN
QQEGGEE
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mRNA from alignment at Scaffold_61:59561..62088+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1055_7a-0001 ID=EsuBft1055_7a-0001|Name=EsuBft1055_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2528bp|location=Sequence derived from alignment at Scaffold_61:59561..62088+ (Ectocarpus subulatus male Bft15b)
TCTCCACCCGCTGCTATCTGTCAGACAGCTACGCCCCTTCCACACATTAG
ACATGTACTCCCTCCGTTCCTACGAATCCACCGCACGTCTACGGCATGGC
ACCAATCACCGCATCCATCCTTCCCCTTGTCGCCCTCTCCCTTGGCTCCA
CCACCGCCTTCGTTGCTCCCACCGGTCGTGGCGTCTCGTGGTCCCTGGCC
AACCCTCAGCGTGCCGTCAGGTCGTCCACATCGACCGTATCCACGCGCTA
CAACGCCCGCCGCCCGTAACCAGCAACAACGGCGACATGTTCTCTCCGCA
TGGTGAGCGAGGTCGCGGAGGAGAAAGCGGCCAAGCTCCGAGAGACCGCG
GCCGCCTTCCGCGCGGAAGCTGCCGAGCTGGAGGAGAAGCAGGCGCGAGA
GCGACGCGAGAATGCCCGGCGATCTTCAACACCTTCGACTCCAACAAGGA
CGGATCGGTGGACATCGCCGAGCTCAAGGCAGGACTCGAGAGCCCGCTGC
GTCGGGGCCTCACGAAGACGTTGCAGGCTCGCATGGGGCGGAAGCCGTCG
AAAGAAGAGGTGGGTCGAGAGAGCACTCTGGTAGGGACCGAGTTTGGGGA
AGTATTCACAATTGCTGTGTCCGTACAGTAGGTTGAGCGTTTTGGGTGAG
TGAGCCACAGTAGTGTCGAGTTCCAGGCAGTGTAGATGACAGTGGCAGCA
GCGACTGTTTTGTTCCTTTCCGATCATCGGCCTAGAGTTTGCAATGCACA
CTCCACCACACTGCTGTGTTACTCCTTTTTGTTTCCTTCTGGACCAAAAG
ACGCTTTGGGTACCACATTACACTTGAGAAATCGTCCACATCAAACTCTC
CATGCAATCGGATTATTCCTGTATAGGTCTACTCTCCGAAACAACCAATG
CACCTTTTGGCCGTACCCCTTGTCCCCGTCGATGATTGGCTGCCCTTCGC
CGCTGCTCTGCACTATTGCTGTTGATGTAGGGCTAGGTAAGCCTTGTCCT
GAATCTTAGTTGGTCGGTAGAAAAATGATAAGGGTTGGCCTTCGAAGCGA
GAGCGAGATTCTTGCTTGACACTCGCTTCCAAGTATCGCCCTATGTCGCA
CGCACCCATCCATCACTGCCTCGCCCGAAATCACCGAACAACGCTCACCA
TACCCCTACCACCCGTCCAATCCTACCCTTCATCCTCCCGTTGTTGTCAT
GACATCTCAGGTGGACGAACGCATCGCCGGCCTCCCGGGAGGTACCCTCT
TCCCCGACGAACTCGCACTCAAACTCATCCAGACCTACGACCAGAATGGG
GACGGCCTGCTGCAGCTGTCGGAGTTCGCCCCCACCGAGGAGCTCAGGAC
GAGGCTCGAGGACCTCTTCAGCCAACAGCGGGAGGACGAGCGCGTGGCGC
GCATGGAGGAGCGCCAGCGCCGGATGGATGACAAGATGAGGCCGGACACG
GGGGCGGTGGTGGTGTCTCCCGGCGATGTCAACGACGGTCCGGCCACTAC
CGCCGACAAGGCGCTGTCCGCGTTGCCGTACCTACCTGCTTCCGCTGGCT
GATGGCATCGTGTTCGCCGCCCACCTGTTCGGCGTGTTCCCGGAGCAGAC
GGCGTGGGCGCAGCCGCTGGCCGCCGTGCTGCTGGCGCTGCGGTCCGTGC
CGTTCGCGACTCTGATCGGGTTCTTCAGCCTGTCTGTCCATCGGCTCCGC
AACCCGCAGGTCAACAAGCTGGTGAGGTTCAACACGCAGCAGGCCATCAA
CGTGGACATCGCTCTGATCTTGCCGGGGGTGGTGGGTGCGATCGCGGGGG
CGGTGTTGGGGGCGGACGCTGTGAAGCTGGCGCCTCTGGCGAACGCGGGG
TCGGACGTTGTGTTTGTGGCGTTGTTGGCGGCCGTGGCGTACTCCGTGGG
CACTTCGGCGACGGGGTCGTTCCCGAACAAGCTTCCGTTGTTGGGGCGTT
TGAACCGCGAGAACCCCGAGAACCAGCAGGAGGGCGGCGAGGAGTAGAGG
AAAACAAGTGGTTTGTTGCTATTGTTGTGAGTTCGAATGTAAGGCGGTGT
GTCTGAATACGTTGTGTCCTTCTTTGTTTCCCCGATGAATGCCCACGACT
TCGCCGTCTTTTTTTTCTCGGTTGGTTCCGCTTCGCCAGAGATGGGTTCG
GAGGTCATTCATCCTGTATTCTGTGTTTTTTTTCGTGGTGTGTTGTGTTT
GTCGGTACTGTAAGTGCGGAAGAGATGCGTGATAGAAGTATAATATTTTC
GAGTGTCCTGAAGTCTTGCAGGTACCGTGTCTGCGTTGTGGTAGTGAGTG
AATGCGATGTATTGATTGTCCGTGACTGGGGTCGTGGTGTGCTGTAAGAC
TTGTCTTTGGTGCCCCATCATGATGGTCTTCAGTCCAAACTGGGTTGCCT
TTTGATGCTGGCGGCTGGGACACGGCCGAGTGTCGGTTCGTGTCAAGGAG
TGTCTGCCAGTTCGGCCTGTGGTGCGTGACGTTACTTTGACGCTGTGTCA
AAGAGAACAAAATCGAATGATGATCAAG
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Coding sequence (CDS) from alignment at Scaffold_61:59561..62088+

>EsuBft1055_7a-0001 ID=EsuBft1055_7a-0001|Name=EsuBft1055_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=924bp|location=Sequence derived from alignment at Scaffold_61:59561..62088+ (Ectocarpus subulatus male Bft15b)
ATGTTCTCTCCGCATGGTGAGCGAGGTCGCGGAGGAGAAAGCGGCCAAGC
TCCGAGAGACCGCGGCCGCCTTCCGCGCGGAAGCTGCCGAGCTGGAGGAG
AAGCAGGCGCGAGAGCGACGCGAGAATGCCCGGCGATCTTCAACACCTTC
GACTCCAACAAGGACGGATCGGTGGACATCGCCGAGCTCAAGGCAGGACT
CGAGAGCCCGCTGCGTCGGGGCCTCACGAAGACGTTGCAGGCTCGCATGG
GGCGGAAGCCGTCGAAAGAAGAGGTGGACGAACGCATCGCCGGCCTCCCG
GGAGGTACCCTCTTCCCCGACGAACTCGCACTCAAACTCATCCAGACCTA
CGACCAGAATGGGGACGGCCTGCTGCAGCTGTCGGAGTTCGCCCCCACCG
AGGAGCTCAGGACGAGGCTCGAGGACCTCTTCAGCCAACAGCGGGAGGAC
GAGCGCGTGGCGCGCATGGAGGAGCGCCAGCGCCGGATGGATGACAAGAT
GAGGCCGGACACGGGGGCGGTGGTGACGGCGTGGGCGCAGCCGCTGGCCG
CCGTGCTGCTGGCGCTGCGGTCCGTGCCGTTCGCGACTCTGATCGGGTTC
TTCAGCCTGTCTGTCCATCGGCTCCGCAACCCGCAGGTCAACAAGCTGGT
GAGGTTCAACACGCAGCAGGCCATCAACGTGGACATCGCTCTGATCTTGC
CGGGGGTGGTGGGTGCGATCGCGGGGGCGGTGTTGGGGGCGGACGCTGTG
AAGCTGGCGCCTCTGGCGAACGCGGGGTCGGACGTTGTGTTTGTGGCGTT
GTTGGCGGCCGTGGCGTACTCCGTGGGCACTTCGGCGACGGGGTCGTTCC
CGAACAAGCTTCCGTTGTTGGGGCGTTTGAACCGCGAGAACCCCGAGAAC
CAGCAGGAGGGCGGCGAGGAGTAG
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