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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
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| Seed ortholog | 160860.XP_007353053.1 |
| ProteomeId | EsuBft104_6 |
| Protein domains | SignalP-noTM |
| Protein domains | IPR013103 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | PTHR11439 |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 5 |
| Max annot lvl | 4751|Fungi |
| Length | 1503 |
| Hectar predicted targeting category | signal peptide |
| Evalue | 1.53e-35 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3UY7N@5204|Basidiomycota,227R3@155619|Agaricomycetes,3H58M@355688|Agaricomycetes incertae sedis |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Reverse transcriptase (RNA-dependent DNA polymerase) |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
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| GO | 0003824 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft104_6a-0001 ID=EsuBft104_6a-0001|Name=EsuBft104_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1503bp|location=Sequence derived from alignment at Scaffold_255:525350..527730- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGTACGCTGTCTGCTTGCTGACTCTGGTCTACTGCACTTTCTGTGGGG
AGAGCTCTTCATGGCCGCTTCGTATCTGAGCAACCGTGCTCCACACTCGG
CTTTGGACAACGTGGCGCCCTTCAAGGCCCTTCATGGCAAGGAGGCCTAT
CTTGGCCACCTTCGGGCGATCGGAGCCAGAGCTTTGTTCACGTGGAGACC
CATACCAACAAGCTTGATGCTCGTCCCTGGGAAGGACGGCTGGTTGGCTA
CAGCGTCGACAGCAAATCTTTTCGGATTGACAACCCGGAAACGAGGAGAG
TACGCGAGAGCCGCAACGTCGTCTTCATCGAGACACCGTCGGCCATGCCG
GAACCGGGCGTGGGGAACGAGCAAGGTACCTGGCACTTTCGAAGAGGCCA
TGGAGCTCGCGGAAGCAGACTTATGGAAACAAGCAGCCGAGACGGAGATC
AAGAGTCTTCAAGAGCTAAAGCGCGACTGCACGTACAAGGCGAGACTGGT
AGCCCTGGGCTGGAATCAAGTTCCGGAAAAGGATTGCGGTGGAACCTTCG
CTCCTGTCTGCAGACTGCAAAGTGTGCGGATGGTGTTTGCCATTGCTGCT
GAGATGGACTGGGAGAAAACAATCGATCTAAAACTCATCGAACTTGGGTG
TAACCCACTCAAGTCGGACTCCTGCGTGTACATCTACAAGCGCAATCACA
CGATTGTGATCATCACCCTCTACGTCGACGATCTTGTCGTCATCGGCGGA
AACATCGAAGTGATAGAAGCAATTAAGACGAAGCTTATGGAGCAGTTCCA
AATGAGTGTTTTGGGGAATGTGTCACTTGTGCTAGGGATGCAGGTCACTC
GTGATGGTGAACATGGAACGCTCACCATTACACAAGCCGACTACACAAGG
TCCATTCTTGCGCGGTTTGGTATGGAGGAATGCAAGCCCACGAGTATTCC
AAGCGTTGGTTCGGAGCTATCCACGGAGCAGCCTACCGAGACTGTTCTGA
ATAAGGAGAAAACGCAGAGCCAGCTTGCACGCGTGATGTCCAAGGCAGCG
AAGGCGCACATGGGTGCTGCTAAGCATCTTCTACGGGGTACACAGGATTT
TTGCATCACGTACAAGCGAGGAGGCTTCAAACTGACCGCATTCTCGGATG
CCAACTGGGAGAGCAACCCTGATAATGCGAGGTCGACTTCATCCTACATG
ATCATGATGTCGAAGGCTCCCGTAAGCTTCAAGACGGGTCTGCAAGATTT
AACGGTAATGTCGACCATGGAGGCAGAGCTGCTGGCTGCAGCTCTAACGA
TGAAGGAAGCGGTGTTCTGCTCTAATATGATGACTGAGTTAGGGTTCGGA
CAGCAGTTCGGTCAAGTGCCGTTGTACATAAACAACACGGCCACCCTTCA
CGTAATCGGGAATCAAGCCTACAGTTCCCGTACGAAACACATCGCCTTAC
TTTTCTTCTGTGTTCGAGAGCTGGTGAAGGAAGGCGCAATCACCATCCAC
TAA back to topprotein sequence of EsuBft104_6a-0001 >EsuBft104_6 ID=EsuBft104_6|Name=EsuBft104_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=500bp
MVRCLLADSGLLHFLWGELFMAASYLSNRAPHSALDNVAPFKALHGKEAY
LGHLRAIGARALFTWRPIPTSLMLVPGKDGWLATASTANLFGLTTRKRGE
YARAATSSSSRHRRPCRNRAWGTSKVPGTFEEAMELAEADLWKQAAETEI
KSLQELKRDCTYKARLVALGWNQVPEKDCGGTFAPVCRLQSVRMVFAIAA
EMDWEKTIDLKLIELGCNPLKSDSCVYIYKRNHTIVIITLYVDDLVVIGG
NIEVIEAIKTKLMEQFQMSVLGNVSLVLGMQVTRDGEHGTLTITQADYTR
SILARFGMEECKPTSIPSVGSELSTEQPTETVLNKEKTQSQLARVMSKAA
KAHMGAAKHLLRGTQDFCITYKRGGFKLTAFSDANWESNPDNARSTSSYM
IMMSKAPVSFKTGLQDLTVMSTMEAELLAAALTMKEAVFCSNMMTELGFG
QQFGQVPLYINNTATLHVIGNQAYSSRTKHIALLFFCVRELVKEGAITIH back to topmRNA from alignment at Scaffold_255:525350..527730- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft104_6a-0001 ID=EsuBft104_6a-0001|Name=EsuBft104_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2381bp|location=Sequence derived from alignment at Scaffold_255:525350..527730- (Ectocarpus subulatus male Bft15b)
ATGGTACGCTGTCTGCTTGCTGACTCTGGTCTACTGCACTTTCTGTGGGG
AGAGCTCTTCATGGCCGCTTCGTATCTGAGCAACCGTGCTCCACACTCGG
CTTTGGACAACGTGGCGCCCTTCAAGGCCCTTCATGGCAAGGAGGCCTAT
CTTGGCCACCTTCGGGCGATCGGAGCCAGAGCTTTGTTCACGTGGAGACC
CATACCAACAAGCTTGATGCTCGTCCCTGGGAAGGACGGCTGGTTGGCTA
CAGCGTCGACAGCAAATCTTTTCGGATTGACAACCCGGAAACGAGGAGAG
TACGCGAGAGCCGCAACGTCGTCTTCATCGAGACACCGTCGGCCATGCCG
GAACCGGGCGTGGTGAGTGGGTTTGATGAGGGCACATTTTCGTACGACGA
TTCTGAGGATCTCATTCGCGACTTGTGCAATTACATGTCACGCGTTGATC
TCGATGACTCGTCTTCGGAATACCGCATGTCAGATGACGTGTGGGTGCGT
TCTCTTCTCGACCAAATTCATGAAGCAACTGCCCGAGACCTTCGGTCTTC
GGGTGCTCCGTCTTCTTCTGCGCAACAATCCTCACCAGCTGCTGCTCCGG
GAGACACTTCCACACTGCTCAAGGGGAGGGTACTCCCACTCCTGCACCTG
CTCCAGCGGGAGGTAGTCCTGCGCGTGGTCGGACTTCCGGGTCTGCCCCT
TCCACGCGTGGCAGGGCTACGTCAACTCCTCCTCGAAACTTTCGTTCCAG
GTTTGCTCGTGCTGGGAGTGTGCCTACGGCGGGATCTGTTCGCGAACTCA
AAAAGCTTGCCTACTTCGCGAAGGGGGAGTTTCCCGACGTAAATTTAGCG
CACGAAGATGCGCAGCTTGGCTTTGTCGAGTACACCTATGCAGCAACAAG
CACCCAACTCGAAAGTCGTTCTTCTAGGGGAACGAGCAAGGTACCTGGCA
CTTTCGAAGAGGCCATGGAGCTCGCGGAAGCAGACTTATGGAAACAAGCA
GCCGAGACGGAGATCAAGAGTCTTCAAGAGCTAAAGGTTTATACGCTCGT
TCCGCTATCTGAAGTTTCTGATAATCAAGATGTCATTGGTTCTATATGGG
TGTTCAAGGTCAGCGCGACTGCACGTACAAGGCGAGACTGGTAGCCCTGG
GCTGGAATCAAGTTCCGGAAAAGGATTGCGGTGGAACCTTCGCTCCTGTC
TGCAGACTGCAAAGTGTGCGGATGGTGTTTGCCATTGCTGCTGAGATGGA
CTGGGAGGTACGCCAACTTCACGTCAAAACTGCTTTTCTTTATGCTGACA
TAGAGGAGGACGTGTTTGTGAAGATGGCACCTGGCTTCGAAGCCAGTAAC
GCAAACGGAGAGAAGCTTGTAATGAAGCTTGGAAAGAGTCAATACGGATC
AGCTCAAAGCTCCCAGAACTGCTAGAAAACAATCGATCTAAAACTCATCG
AACTTGGGTGTAACCCACTCAAGTCGGACTCCTGCGTGTACATCTACAAG
CGCAATCACACGATTGTGATCATCACCCTCTACGTCGACGATCTTGTCGT
CATCGGCGGAAACATCGAAGTGATAGAAGCAATTAAGACGAAGCTTATGG
AGCAGTTCCAAATGAGTGTTTTGGGGAATGTGTCACTTGTGCTAGGGATG
CAGGTCACTCGTGATGGTGAACATGGAACGCTCACCATTACACAAGCCGA
CTACACAAGGTCCATTCTTGCGCGGTTTGGTATGGAGGAATGCAAGCCCA
CGAGTATTCCAAGCGTTGGTTCGGAGCTATCCACGGAGCAGCCTACCGAG
ACTGTTCTGAATAAGGAGAAAACGCAGAGGTATCAGGCCATCACCGGATC
GATCATGTATCTCGCTCAGATTACTAGGTGCGATGTCATGCTACAAGCCA
GCTTGCACGCGTGATGTCCAAGGCAGCGAAGGCGCACATGGGTGCTGCTA
AGCATCTTCTACGGGGTACACAGGATTTTTGCATCACGTACAAGCGAGGA
GGCTTCAAACTGACCGCATTCTCGGATGCCAACTGGGAGAGCAACCCTGA
TAATGCGAGGTCGACTTCATCCTACATGATCATGATGTCGAAGGCTCCCG
TAAGCTTCAAGACGGGTCTGCAAGATTTAACGGTAATGTCGACCATGGAG
GCAGAGCTGCTGGCTGCAGCTCTAACGATGAAGGAAGCGGTGTTCTGCTC
TAATATGATGACTGAGTTAGGGTTCGGACAGCAGTTCGGTCAAGTGCCGT
TGTACATAAACAACACGGCCACCCTTCACGTAATCGGGAATCAAGCCTAC
AGTTCCCGTACGAAACACATCGCCTTACTTTTCTTCTGTGTTCGAGAGCT
GGTGAAGGAAGGCGCAATCACCATCCACTAA back to topCoding sequence (CDS) from alignment at Scaffold_255:525350..527730- >EsuBft104_6a-0001 ID=EsuBft104_6a-0001|Name=EsuBft104_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1503bp|location=Sequence derived from alignment at Scaffold_255:525350..527730- (Ectocarpus subulatus male Bft15b)
ATGGTACGCTGTCTGCTTGCTGACTCTGGTCTACTGCACTTTCTGTGGGG
AGAGCTCTTCATGGCCGCTTCGTATCTGAGCAACCGTGCTCCACACTCGG
CTTTGGACAACGTGGCGCCCTTCAAGGCCCTTCATGGCAAGGAGGCCTAT
CTTGGCCACCTTCGGGCGATCGGAGCCAGAGCTTTGTTCACGTGGAGACC
CATACCAACAAGCTTGATGCTCGTCCCTGGGAAGGACGGCTGGTTGGCTA
CAGCGTCGACAGCAAATCTTTTCGGATTGACAACCCGGAAACGAGGAGAG
TACGCGAGAGCCGCAACGTCGTCTTCATCGAGACACCGTCGGCCATGCCG
GAACCGGGCGTGGGGAACGAGCAAGGTACCTGGCACTTTCGAAGAGGCCA
TGGAGCTCGCGGAAGCAGACTTATGGAAACAAGCAGCCGAGACGGAGATC
AAGAGTCTTCAAGAGCTAAAGCGCGACTGCACGTACAAGGCGAGACTGGT
AGCCCTGGGCTGGAATCAAGTTCCGGAAAAGGATTGCGGTGGAACCTTCG
CTCCTGTCTGCAGACTGCAAAGTGTGCGGATGGTGTTTGCCATTGCTGCT
GAGATGGACTGGGAGAAAACAATCGATCTAAAACTCATCGAACTTGGGTG
TAACCCACTCAAGTCGGACTCCTGCGTGTACATCTACAAGCGCAATCACA
CGATTGTGATCATCACCCTCTACGTCGACGATCTTGTCGTCATCGGCGGA
AACATCGAAGTGATAGAAGCAATTAAGACGAAGCTTATGGAGCAGTTCCA
AATGAGTGTTTTGGGGAATGTGTCACTTGTGCTAGGGATGCAGGTCACTC
GTGATGGTGAACATGGAACGCTCACCATTACACAAGCCGACTACACAAGG
TCCATTCTTGCGCGGTTTGGTATGGAGGAATGCAAGCCCACGAGTATTCC
AAGCGTTGGTTCGGAGCTATCCACGGAGCAGCCTACCGAGACTGTTCTGA
ATAAGGAGAAAACGCAGAGCCAGCTTGCACGCGTGATGTCCAAGGCAGCG
AAGGCGCACATGGGTGCTGCTAAGCATCTTCTACGGGGTACACAGGATTT
TTGCATCACGTACAAGCGAGGAGGCTTCAAACTGACCGCATTCTCGGATG
CCAACTGGGAGAGCAACCCTGATAATGCGAGGTCGACTTCATCCTACATG
ATCATGATGTCGAAGGCTCCCGTAAGCTTCAAGACGGGTCTGCAAGATTT
AACGGTAATGTCGACCATGGAGGCAGAGCTGCTGGCTGCAGCTCTAACGA
TGAAGGAAGCGGTGTTCTGCTCTAATATGATGACTGAGTTAGGGTTCGGA
CAGCAGTTCGGTCAAGTGCCGTTGTACATAAACAACACGGCCACCCTTCA
CGTAATCGGGAATCAAGCCTACAGTTCCCGTACGAAACACATCGCCTTAC
TTTTCTTCTGTGTTCGAGAGCTGGTGAAGGAAGGCGCAATCACCATCCAC
TAA back to top
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