EsuBft104_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft104_6a-0001
Unique NameEsuBft104_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_255contigScaffold_255:525350..527730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog160860.XP_007353053.1
ProteomeIdEsuBft104_6
Protein domainsSignalP-noTM
Protein domainsIPR013103
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsPTHR11439
Protein domainsSIGNAL_PEPTIDE_N_REGION
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon5
Max annot lvl4751|Fungi
Length1503
Hectar predicted targeting categorysignal peptide
Evalue1.53e-35
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3UY7N@5204|Basidiomycota,227R3@155619|Agaricomycetes,3H58M@355688|Agaricomycetes incertae sedis
Date last modified2016-06-14
Date creation2016-06-14
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft104_6aEsuBft104_6aEctocarpus subulatus male Bft15bgeneScaffold_255 525350..527730 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_6a-0001EsuBft104_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_255 525350..527730 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_6a-0001-exonagat-exon-6683Ectocarpus subulatus male Bft15bexonScaffold_255 525350..525833 -
EsuBft104_6a-0001-exonEsuBft104_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_255 525902..526305 -
EsuBft104_6a-0001-exonagat-exon-6682Ectocarpus subulatus male Bft15bexonScaffold_255 526474..526617 -
EsuBft104_6a-0001-exonagat-exon-6681Ectocarpus subulatus male Bft15bexonScaffold_255 526695..526803 -
EsuBft104_6a-0001-exonagat-exon-6680Ectocarpus subulatus male Bft15bexonScaffold_255 527369..527730 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_6a-0001-cdsEsuBft104_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_255 525350..525833 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft104_6a-0001 ID=EsuBft104_6a-0001|Name=EsuBft104_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1503bp|location=Sequence derived from alignment at Scaffold_255:525350..527730- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTACGCTGTCTGCTTGCTGACTCTGGTCTACTGCACTTTCTGTGGGG
AGAGCTCTTCATGGCCGCTTCGTATCTGAGCAACCGTGCTCCACACTCGG
CTTTGGACAACGTGGCGCCCTTCAAGGCCCTTCATGGCAAGGAGGCCTAT
CTTGGCCACCTTCGGGCGATCGGAGCCAGAGCTTTGTTCACGTGGAGACC
CATACCAACAAGCTTGATGCTCGTCCCTGGGAAGGACGGCTGGTTGGCTA
CAGCGTCGACAGCAAATCTTTTCGGATTGACAACCCGGAAACGAGGAGAG
TACGCGAGAGCCGCAACGTCGTCTTCATCGAGACACCGTCGGCCATGCCG
GAACCGGGCGTGGGGAACGAGCAAGGTACCTGGCACTTTCGAAGAGGCCA
TGGAGCTCGCGGAAGCAGACTTATGGAAACAAGCAGCCGAGACGGAGATC
AAGAGTCTTCAAGAGCTAAAGCGCGACTGCACGTACAAGGCGAGACTGGT
AGCCCTGGGCTGGAATCAAGTTCCGGAAAAGGATTGCGGTGGAACCTTCG
CTCCTGTCTGCAGACTGCAAAGTGTGCGGATGGTGTTTGCCATTGCTGCT
GAGATGGACTGGGAGAAAACAATCGATCTAAAACTCATCGAACTTGGGTG
TAACCCACTCAAGTCGGACTCCTGCGTGTACATCTACAAGCGCAATCACA
CGATTGTGATCATCACCCTCTACGTCGACGATCTTGTCGTCATCGGCGGA
AACATCGAAGTGATAGAAGCAATTAAGACGAAGCTTATGGAGCAGTTCCA
AATGAGTGTTTTGGGGAATGTGTCACTTGTGCTAGGGATGCAGGTCACTC
GTGATGGTGAACATGGAACGCTCACCATTACACAAGCCGACTACACAAGG
TCCATTCTTGCGCGGTTTGGTATGGAGGAATGCAAGCCCACGAGTATTCC
AAGCGTTGGTTCGGAGCTATCCACGGAGCAGCCTACCGAGACTGTTCTGA
ATAAGGAGAAAACGCAGAGCCAGCTTGCACGCGTGATGTCCAAGGCAGCG
AAGGCGCACATGGGTGCTGCTAAGCATCTTCTACGGGGTACACAGGATTT
TTGCATCACGTACAAGCGAGGAGGCTTCAAACTGACCGCATTCTCGGATG
CCAACTGGGAGAGCAACCCTGATAATGCGAGGTCGACTTCATCCTACATG
ATCATGATGTCGAAGGCTCCCGTAAGCTTCAAGACGGGTCTGCAAGATTT
AACGGTAATGTCGACCATGGAGGCAGAGCTGCTGGCTGCAGCTCTAACGA
TGAAGGAAGCGGTGTTCTGCTCTAATATGATGACTGAGTTAGGGTTCGGA
CAGCAGTTCGGTCAAGTGCCGTTGTACATAAACAACACGGCCACCCTTCA
CGTAATCGGGAATCAAGCCTACAGTTCCCGTACGAAACACATCGCCTTAC
TTTTCTTCTGTGTTCGAGAGCTGGTGAAGGAAGGCGCAATCACCATCCAC
TAA
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protein sequence of EsuBft104_6a-0001

>EsuBft104_6 ID=EsuBft104_6|Name=EsuBft104_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=500bp
MVRCLLADSGLLHFLWGELFMAASYLSNRAPHSALDNVAPFKALHGKEAY
LGHLRAIGARALFTWRPIPTSLMLVPGKDGWLATASTANLFGLTTRKRGE
YARAATSSSSRHRRPCRNRAWGTSKVPGTFEEAMELAEADLWKQAAETEI
KSLQELKRDCTYKARLVALGWNQVPEKDCGGTFAPVCRLQSVRMVFAIAA
EMDWEKTIDLKLIELGCNPLKSDSCVYIYKRNHTIVIITLYVDDLVVIGG
NIEVIEAIKTKLMEQFQMSVLGNVSLVLGMQVTRDGEHGTLTITQADYTR
SILARFGMEECKPTSIPSVGSELSTEQPTETVLNKEKTQSQLARVMSKAA
KAHMGAAKHLLRGTQDFCITYKRGGFKLTAFSDANWESNPDNARSTSSYM
IMMSKAPVSFKTGLQDLTVMSTMEAELLAAALTMKEAVFCSNMMTELGFG
QQFGQVPLYINNTATLHVIGNQAYSSRTKHIALLFFCVRELVKEGAITIH
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mRNA from alignment at Scaffold_255:525350..527730-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft104_6a-0001 ID=EsuBft104_6a-0001|Name=EsuBft104_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2381bp|location=Sequence derived from alignment at Scaffold_255:525350..527730- (Ectocarpus subulatus male Bft15b)
ATGGTACGCTGTCTGCTTGCTGACTCTGGTCTACTGCACTTTCTGTGGGG
AGAGCTCTTCATGGCCGCTTCGTATCTGAGCAACCGTGCTCCACACTCGG
CTTTGGACAACGTGGCGCCCTTCAAGGCCCTTCATGGCAAGGAGGCCTAT
CTTGGCCACCTTCGGGCGATCGGAGCCAGAGCTTTGTTCACGTGGAGACC
CATACCAACAAGCTTGATGCTCGTCCCTGGGAAGGACGGCTGGTTGGCTA
CAGCGTCGACAGCAAATCTTTTCGGATTGACAACCCGGAAACGAGGAGAG
TACGCGAGAGCCGCAACGTCGTCTTCATCGAGACACCGTCGGCCATGCCG
GAACCGGGCGTGGTGAGTGGGTTTGATGAGGGCACATTTTCGTACGACGA
TTCTGAGGATCTCATTCGCGACTTGTGCAATTACATGTCACGCGTTGATC
TCGATGACTCGTCTTCGGAATACCGCATGTCAGATGACGTGTGGGTGCGT
TCTCTTCTCGACCAAATTCATGAAGCAACTGCCCGAGACCTTCGGTCTTC
GGGTGCTCCGTCTTCTTCTGCGCAACAATCCTCACCAGCTGCTGCTCCGG
GAGACACTTCCACACTGCTCAAGGGGAGGGTACTCCCACTCCTGCACCTG
CTCCAGCGGGAGGTAGTCCTGCGCGTGGTCGGACTTCCGGGTCTGCCCCT
TCCACGCGTGGCAGGGCTACGTCAACTCCTCCTCGAAACTTTCGTTCCAG
GTTTGCTCGTGCTGGGAGTGTGCCTACGGCGGGATCTGTTCGCGAACTCA
AAAAGCTTGCCTACTTCGCGAAGGGGGAGTTTCCCGACGTAAATTTAGCG
CACGAAGATGCGCAGCTTGGCTTTGTCGAGTACACCTATGCAGCAACAAG
CACCCAACTCGAAAGTCGTTCTTCTAGGGGAACGAGCAAGGTACCTGGCA
CTTTCGAAGAGGCCATGGAGCTCGCGGAAGCAGACTTATGGAAACAAGCA
GCCGAGACGGAGATCAAGAGTCTTCAAGAGCTAAAGGTTTATACGCTCGT
TCCGCTATCTGAAGTTTCTGATAATCAAGATGTCATTGGTTCTATATGGG
TGTTCAAGGTCAGCGCGACTGCACGTACAAGGCGAGACTGGTAGCCCTGG
GCTGGAATCAAGTTCCGGAAAAGGATTGCGGTGGAACCTTCGCTCCTGTC
TGCAGACTGCAAAGTGTGCGGATGGTGTTTGCCATTGCTGCTGAGATGGA
CTGGGAGGTACGCCAACTTCACGTCAAAACTGCTTTTCTTTATGCTGACA
TAGAGGAGGACGTGTTTGTGAAGATGGCACCTGGCTTCGAAGCCAGTAAC
GCAAACGGAGAGAAGCTTGTAATGAAGCTTGGAAAGAGTCAATACGGATC
AGCTCAAAGCTCCCAGAACTGCTAGAAAACAATCGATCTAAAACTCATCG
AACTTGGGTGTAACCCACTCAAGTCGGACTCCTGCGTGTACATCTACAAG
CGCAATCACACGATTGTGATCATCACCCTCTACGTCGACGATCTTGTCGT
CATCGGCGGAAACATCGAAGTGATAGAAGCAATTAAGACGAAGCTTATGG
AGCAGTTCCAAATGAGTGTTTTGGGGAATGTGTCACTTGTGCTAGGGATG
CAGGTCACTCGTGATGGTGAACATGGAACGCTCACCATTACACAAGCCGA
CTACACAAGGTCCATTCTTGCGCGGTTTGGTATGGAGGAATGCAAGCCCA
CGAGTATTCCAAGCGTTGGTTCGGAGCTATCCACGGAGCAGCCTACCGAG
ACTGTTCTGAATAAGGAGAAAACGCAGAGGTATCAGGCCATCACCGGATC
GATCATGTATCTCGCTCAGATTACTAGGTGCGATGTCATGCTACAAGCCA
GCTTGCACGCGTGATGTCCAAGGCAGCGAAGGCGCACATGGGTGCTGCTA
AGCATCTTCTACGGGGTACACAGGATTTTTGCATCACGTACAAGCGAGGA
GGCTTCAAACTGACCGCATTCTCGGATGCCAACTGGGAGAGCAACCCTGA
TAATGCGAGGTCGACTTCATCCTACATGATCATGATGTCGAAGGCTCCCG
TAAGCTTCAAGACGGGTCTGCAAGATTTAACGGTAATGTCGACCATGGAG
GCAGAGCTGCTGGCTGCAGCTCTAACGATGAAGGAAGCGGTGTTCTGCTC
TAATATGATGACTGAGTTAGGGTTCGGACAGCAGTTCGGTCAAGTGCCGT
TGTACATAAACAACACGGCCACCCTTCACGTAATCGGGAATCAAGCCTAC
AGTTCCCGTACGAAACACATCGCCTTACTTTTCTTCTGTGTTCGAGAGCT
GGTGAAGGAAGGCGCAATCACCATCCACTAA
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Coding sequence (CDS) from alignment at Scaffold_255:525350..527730-

>EsuBft104_6a-0001 ID=EsuBft104_6a-0001|Name=EsuBft104_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1503bp|location=Sequence derived from alignment at Scaffold_255:525350..527730- (Ectocarpus subulatus male Bft15b)
ATGGTACGCTGTCTGCTTGCTGACTCTGGTCTACTGCACTTTCTGTGGGG
AGAGCTCTTCATGGCCGCTTCGTATCTGAGCAACCGTGCTCCACACTCGG
CTTTGGACAACGTGGCGCCCTTCAAGGCCCTTCATGGCAAGGAGGCCTAT
CTTGGCCACCTTCGGGCGATCGGAGCCAGAGCTTTGTTCACGTGGAGACC
CATACCAACAAGCTTGATGCTCGTCCCTGGGAAGGACGGCTGGTTGGCTA
CAGCGTCGACAGCAAATCTTTTCGGATTGACAACCCGGAAACGAGGAGAG
TACGCGAGAGCCGCAACGTCGTCTTCATCGAGACACCGTCGGCCATGCCG
GAACCGGGCGTGGGGAACGAGCAAGGTACCTGGCACTTTCGAAGAGGCCA
TGGAGCTCGCGGAAGCAGACTTATGGAAACAAGCAGCCGAGACGGAGATC
AAGAGTCTTCAAGAGCTAAAGCGCGACTGCACGTACAAGGCGAGACTGGT
AGCCCTGGGCTGGAATCAAGTTCCGGAAAAGGATTGCGGTGGAACCTTCG
CTCCTGTCTGCAGACTGCAAAGTGTGCGGATGGTGTTTGCCATTGCTGCT
GAGATGGACTGGGAGAAAACAATCGATCTAAAACTCATCGAACTTGGGTG
TAACCCACTCAAGTCGGACTCCTGCGTGTACATCTACAAGCGCAATCACA
CGATTGTGATCATCACCCTCTACGTCGACGATCTTGTCGTCATCGGCGGA
AACATCGAAGTGATAGAAGCAATTAAGACGAAGCTTATGGAGCAGTTCCA
AATGAGTGTTTTGGGGAATGTGTCACTTGTGCTAGGGATGCAGGTCACTC
GTGATGGTGAACATGGAACGCTCACCATTACACAAGCCGACTACACAAGG
TCCATTCTTGCGCGGTTTGGTATGGAGGAATGCAAGCCCACGAGTATTCC
AAGCGTTGGTTCGGAGCTATCCACGGAGCAGCCTACCGAGACTGTTCTGA
ATAAGGAGAAAACGCAGAGCCAGCTTGCACGCGTGATGTCCAAGGCAGCG
AAGGCGCACATGGGTGCTGCTAAGCATCTTCTACGGGGTACACAGGATTT
TTGCATCACGTACAAGCGAGGAGGCTTCAAACTGACCGCATTCTCGGATG
CCAACTGGGAGAGCAACCCTGATAATGCGAGGTCGACTTCATCCTACATG
ATCATGATGTCGAAGGCTCCCGTAAGCTTCAAGACGGGTCTGCAAGATTT
AACGGTAATGTCGACCATGGAGGCAGAGCTGCTGGCTGCAGCTCTAACGA
TGAAGGAAGCGGTGTTCTGCTCTAATATGATGACTGAGTTAGGGTTCGGA
CAGCAGTTCGGTCAAGTGCCGTTGTACATAAACAACACGGCCACCCTTCA
CGTAATCGGGAATCAAGCCTACAGTTCCCGTACGAAACACATCGCCTTAC
TTTTCTTCTGTGTTCGAGAGCTGGTGAAGGAAGGCGCAATCACCATCCAC
TAA
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