EsuBft104_17a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft104_17a-0001
Unique Name	EsuBft104_17a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_255	contig	Scaffold_255:434471..437494 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft104_17
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	182
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft104_17a	EsuBft104_17a	Ectocarpus subulatus male Bft15b	gene	Scaffold_255 434471..437494 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft104_17a-0001	EsuBft104_17	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_255 435360..437494 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft104_17a-0001-exon	agat-exon-6698	Ectocarpus subulatus male Bft15b	exon	Scaffold_255 434471..434520 -
EsuBft104_17a-0001-exon	EsuBft104_17a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_255 435126..435943 -
EsuBft104_17a-0001-exon	agat-exon-6697	Ectocarpus subulatus male Bft15b	exon	Scaffold_255 436534..437494 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft104_17a-0001-exon	agat-three_prime_utr-482	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_255 434471..434520 -
EsuBft104_17a-0001-exon	agat-three_prime_utr-483	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_255 435126..435359 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft104_17a-0001-cds	EsuBft104_17a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_255 435360..435943 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_255:434471..437494-
coding sequence from alignment at Scaffold_255:434471..437494-

spliced messenger RNA

>EsuBft104_17a-0001 ID=EsuBft104_17a-0001|Name=EsuBft104_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1829bp|location=Sequence derived from alignment at Scaffold_255:434471..437494- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTGCCCGCACGAGATGCTCCACGGGAAGCCCCTTCTATTTCATCC
TCTGCCCTTCCTCATGCCGGGTATCGACAACGCGCGTGTCTCCGCCAAGA
TCGCGCCGAAGGGCGGTCGGTGTTTTTACCTCAACCCTGGCGACTTCGTC
TCCCACGACTGCTACAAGGTCATTTTCCCCGCCGGCGCCGCGGGGTTGTT
TGGGGTTACCGCCGCCAGCCGTTCGTCGGTCTCGTGCCCACGCACAAACA
GGGGTGCCGTTTCTGCACCGGCGGCGGCGGCGACAGAGGCACCGGCGCCT
TCGATCCTCGCGGCAGCGGCAGAAGTAAGAGCACCGGCGGCGGCGACGAC
GACAGCTGCAGGAGCGCCGGCGGCAGTGCGGACGGCTTCGGCCAGAGCCA
CACCGGCGATCACGACAGCAGCCGGAGGCGCGCCGGCGGCAGTGCGGACA
GCTCCGGCCAGAACCCCGTCGACGGCAGCAATACCACCGGAAGCAGTGGC
GGCGGCGGCGGTATCGATGGCGGGGGGAACGACAGCAGAGGCAGCAGCAG
CGTCGTCCTCGGTCGCCGCGTTGGCGCCGGGCACTCAGACGGACGCAGCG
ACGATGGCGGCGGCGGCGGCGGGGAGGGGAACGGCAGCAGCAGGAGCAGC
AGCGTTGTCCCCGGTCGCCGCGCTGGCATCGGAAGGAGTGGCGGCGGTGC
GACGGCCAGAGCGCCGTCCCCGACAGCAGCATCGGCGGTGGCGGCATCGG
TGCCGGGGGAACAGCAGCGGCAGCAGCAGCTGCGGCGTCTGCGGTCGCCG
CATTGGCGTTGGATGTCCAGACGGCCGCAGCGGCGACGGCGTCGACATCG
GTGACGGGGGTAACGACAGCGGCGACAGCAGCAGCGGCATCCCCGGTCGC
CGCGTTGGCGTCGAGTGTCCAGACAGCCGCAGGGGTGGCGGCGGCGGCAC
CGGTGACGGAGGAACGGGAGTGGAAGCTCTGGCGGCGGCAACGACGGCGG
CCGCAGTAGCGACGGGAGTGGCGGCTTCGGCCAGAGCTCCTGCGGCGACA
CCGGCGGCAGCAGGAGCAGCGACGGGAGTGGTGGCTTCGGCCAGAGCTCG
GACGGCAGCAGCAGACGGCAGCGGCGGCTTCGGCCAGAGCCCCGTCGGCG
GCNTGGGGTGGCGTCCTTCGATAGGGGCAGGAACGGGAGTGGAAGCTCTG
GCGGCGGCAACGACGGCGGCCGCAGTAGCGACGGGAGTGGCGGCTTCGGC
CAGAGCTCCTGCGGCGACACCGGCGGCAGCAGGAGCAGCGACGGGAGTGG
TGGCTTCGGCCAGAGCTCGGACGGCAGCAGCAGACGGCAGCGGCGGCTTC
GGCCAGAGCCCCGTCGGCGGCAGCGGCGACAACGGCGGCGGGGGTAGAGG
CGGCAGCAGCGACGTCACCGGCAGCCGTGTTGGCGCTGGAACTCATGACA
GTTGTGGCGGCGGGGGAAGTGCAACGGCGGCGATGGCAGCGGCGGCAGCA
GCAGTGGCGCCCTCGAGTCGACCGGGAACGGGTAGGACACGGTGACAGCG
ACGACCTCACGTTGTTACAGCCAAGTGGGAGAACATGTGAAACGTTGGCA
AGTTTGTGCGGTTTTGTGAGCGGGCATGGACGTTTTAGCTTCGCCATTTG
GCTTCGCCTTTTTTTTTTAGTTCTGTTTTTCCCTTGTTAGCGAACCGTGC
ACTTTGATCCAGAAAACACGTGTGTGCCACGGCGTGCGCGTAGTGTTTCT
TTTTTTTTGTACTTGTTTTCATGATAATTATATTAGCTCGGGGTGAATTT
TTGGAGCTGACAGCAGGGGGGCTGTTCGC

protein sequence of EsuBft104_17a-0001

>EsuBft104_17 ID=EsuBft104_17|Name=EsuBft104_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=514bp
MLCPHEMLHGKPLLFHPLPFLMPGIDNARVSAKIAPKGGRCFYLNPGDFV
SHDCYKVIFPAGAAGLFGVTAASRSSVSCPRTNRGAVSAPAAAATEAPAP
SILAAAAEVRAPAAATTTAAGAPAAVRTASARATPAITTAAGGAPAAVRT
APARTPSTAAIPPEAVAAAAVSMAGGTTAEAAAASSSVAALAPGTQTDAA
TMAAAAAGRGTAAAGAAALSPVAALASEGVAAVRRPERRPRQQHRRWRHR
CRGNSSGSSSCGVCGRRIGVGCPDGRSGDGVDIGDGGNDSGDSSSGIPGR
RVGVECPDSRRGGGGGTGDGGTGVEALAAATTAAAVATGVAASARAPAAT
PAAAGAATGVVASARARTAAADGSGGFGQSPVGGXGWRPSIGAGTGVEAL
AAATTAAAVATGVAASARAPAATPAAAGAATGVVASARARTAAADGSGGF
GQSPVGGSGDNGGGGRGGSSDVTGSRVGAGTHDSCGGGGSATAAMAAAAA
AVAPSSRPGTGRTR

mRNA from alignment at Scaffold_255:434471..437494-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft104_17a-0001 ID=EsuBft104_17a-0001|Name=EsuBft104_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3024bp|location=Sequence derived from alignment at Scaffold_255:434471..437494- (Ectocarpus subulatus male Bft15b)
ATGCTGTGCCCGCACGAGATGCTCCACGGGAAGCCCCTTCTATTTCATCC
TCTGCCCTTCCTCATGCCGGGTATCGACAACGCGCGTGTCTCCGCCAAGA
TCGCGCCGAAGGGCGGTCGGTGTTTTTACCTCAACCCTGGCGACTTCGTC
TCCCACGACTGCTACAAGGTCATTTTCCCCGCCGGCGCCGCGGGGTTGTT
TGGGGTTACCGCCGCCAGCCGTTCGTCGGTCTCGTGCCCACGCACAAACA
GGGGTGCCGTTTCTGCACCGGCGGCGGCGGCGACAGAGGCACCGGCGCCT
TCGATCCTCGCGGCAGCGGCAGAAGTAAGAGCACCGGCGGCGGCGACGAC
GACAGCTGCAGGAGCGCCGGCGGCAGTGCGGACGGCTTCGGCCAGAGCCA
CACCGGCGATCACGACAGCAGCCGGAGGCGCGCCGGCGGCAGTGCGGACA
GCTCCGGCCAGAACCCCGTCGACGGCAGCAATACCACCGGAAGCAGTGGC
GGCGGCGGCGGTATCGATGGCGGGGGGAACGACAGCAGAGGCAGCAGCAG
CGTCGTCCTCGGTCGCCGCGTTGGCGCCGGGCACTCAGACGGACGCAGCG
ACGATGGCGGCGGCGGCGGCGGGGAGGGGAACGGCAGCAGCAGGAGCAGC
AGCGTTGTCCCCGGTCGCCGCGCTGGCATCGGAAGGAGTGGCGGCGGTGC
GACGGCCAGAGCGCCGTCCCCGACAGCAGCATCGGCGGTGGCGGCATCGG
TGCCGGGGGAACAGCAGCGGCAGCAGCAGCTGCGGCGTCTGCGGTCGCCG
CATTGGCGTTGGATGTCCAGACGGCCGCAGCGGCGACGGCGTCGACATCG
GTGACGGGGGTAACGACAGCGGCGACAGCAGCAGCGGCATCCCCGGTCGC
CGCGTTGGCGTCGAGTGTCCAGACAGCCGCAGGGGTGGCGGCGGCGGCAC
CGGTGACGGAGGTATGTGACAAAGAGTTGGAGTAAGCGGTTGGTGCGACA
ACCACGCCATTGCCAGTCTTGGAGGAGCTTCATAGCCAACGGGTTGGGGG
GAACGTGAGCAACAGCAGCAGCAGCAGCCGTAGCAGCAGCAGTAGCAGCA
GCAGCAGCAGCAGCAAGGACAGCGGCGGCGACGAGAGAGGGAACGAGGAG
TTGGATGAAATCTGGAATGGAGCCCCGACGCACCCTTTCGGCCCCGGGAA
GGCTGAGGGGGACGTGAGCAGCAGCAGAAGCAGCAGCAGCTGTAGCAGCA
GTGGCGAGGACAGCGGCGGCGATGGGCGCGGGGACGAGGGGTTGGATAAA
ATCTGGAGTGGAGCCCCGACGCACCCTTTCGACCCCGGGAAGACTGAGGA
GGAAGTGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCG
AGGAAAGCGGTGGTGATGGGAGCGGGGATGAGGGCTTAGATAAAACTTTG
AGTAGAGCCCGGACGCACCCGTTCGACCCCGGTAAGACATCTTCGCGTGG
CGCGAGGAGACGGGGGGCGGTACCTGGGGTGGCGTCCTTCGATAGGGGCA
GGAACGGGAGTGGAAGCTCTGGCGGCGGCAACGACGGCGGCCGCAGTAGC
GACGGGAGTGGCGGCTTCGGCCAGAGCTCCTGCGGCGACACCGGCGGCAG
CAGGAGCAGCGACGGGAGTGGTGGCTTCGGCCAGAGCTCGGACGGCAGCA
GCAGACGGCAGCGGCGGCTTCGGCCAGAGCCCCGTCGGCGGCNTGGGGTG
GCGTCCTTCGATAGGGGCAGGAACGGGAGTGGAAGCTCTGGCGGCGGCAA
CGACGGCGGCCGCAGTAGCGACGGGAGTGGCGGCTTCGGCCAGAGCTCCT
GCGGCGACACCGGCGGCAGCAGGAGCAGCGACGGGAGTGGTGGCTTCGGC
CAGAGCTCGGACGGCAGCAGCAGACGGCAGCGGCGGCTTCGGCCAGAGCC
CCGTCGGCGGCAGCGGCGACAACGGCGGCGGGGGTAGAGGCGGCAGCAGC
GACGTCACCGGCAGCCGTGTTGGCGCTGGAACTCATGACAGTTGTGGCGG
CGGGGGAAGTGCAACGGCGGCGATGGCAGCGGCGGCAGCAGCAGTGGCGC
CCTCGAGTCGACCGGGAACGGGTAGGACACGGTGACAGCGACGACCTCAC
GTTGTTACAGCCAAGTGGGAGAACATGTGAAACGTTGGCAAGTTTGTGCG
GTTTTGTGAGCGGGCATGGACGTTTTAGCTTCGCCATTTGGCTTCGCCTT
TTTTTTTTAGTTCTGTTTTTCCCTTGTTAGCGAACCGTGCACTTTGATCC
AGAAAACACGTGTGTGCCACGGCGTGCGCGTAGTGTTTCTTTTTTTTTGT
ACTTGTTTTCATGATAATTGTACGCTGCGACAAGATGAGCATTGCCACAA
CCTGTGGAATAGGAAGCAGCACGTGGGCATATATACATTTTTTCCTTGAT
TCTTGTTATGTTTCCAGTCGCCTTTAACCTTGCAGCTGAATACCTTATAT
GATTTCCGTATTCTTTGGAGGGAGTGCGTCAGTCGCGTTTTTTTCTGCGA
ACTGGACACTTCAGCACATAGGATTTTTCGATACTTTGGTTCTTATGTTA
GGTTGTGAGTTAAGAATGGTCGCTCTCCGCGGTGTGTTTCTGGCCGCGCG
AACGAAATGGAATGATACCGCGTTGTTTGACATGCGTGAAGGCATACCGC
TCAGGGAGCAGGGGGGCTTTTGGAGCTCCAGTTGAGGAGGCACTTTGCAT
ACGGTACGAACTTTTTCTGGAGTTTGATGCCTTGTGTGTTCCGTGTTTTC
ATGTTTCTGGTTGGCATCGCATGTTTTGCTGCTCTTGCATCGAAAACCAT
GGGGGGGGATGTCATGTATGACCATGATTCTAGAGGGCATGAGCAGCAAT
CGAATTGGTTTGGTTCTGGTCTTGCCTAATTGTGTGTTGGTGAACGGCAA
AGCAGGGGGGCTGTTGGCATCGAGATATTAGCTCGGGGTGAATTTTTGGA
GCTGACAGCAGGGGGGCTGTTCGC

Coding sequence (CDS) from alignment at Scaffold_255:434471..437494-

>EsuBft104_17a-0001 ID=EsuBft104_17a-0001|Name=EsuBft104_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1545bp|location=Sequence derived from alignment at Scaffold_255:434471..437494- (Ectocarpus subulatus male Bft15b)
ATGCTGTGCCCGCACGAGATGCTCCACGGGAAGCCCCTTCTATTTCATCC
TCTGCCCTTCCTCATGCCGGGTATCGACAACGCGCGTGTCTCCGCCAAGA
TCGCGCCGAAGGGCGGTCGGTGTTTTTACCTCAACCCTGGCGACTTCGTC
TCCCACGACTGCTACAAGGTCATTTTCCCCGCCGGCGCCGCGGGGTTGTT
TGGGGTTACCGCCGCCAGCCGTTCGTCGGTCTCGTGCCCACGCACAAACA
GGGGTGCCGTTTCTGCACCGGCGGCGGCGGCGACAGAGGCACCGGCGCCT
TCGATCCTCGCGGCAGCGGCAGAAGTAAGAGCACCGGCGGCGGCGACGAC
GACAGCTGCAGGAGCGCCGGCGGCAGTGCGGACGGCTTCGGCCAGAGCCA
CACCGGCGATCACGACAGCAGCCGGAGGCGCGCCGGCGGCAGTGCGGACA
GCTCCGGCCAGAACCCCGTCGACGGCAGCAATACCACCGGAAGCAGTGGC
GGCGGCGGCGGTATCGATGGCGGGGGGAACGACAGCAGAGGCAGCAGCAG
CGTCGTCCTCGGTCGCCGCGTTGGCGCCGGGCACTCAGACGGACGCAGCG
ACGATGGCGGCGGCGGCGGCGGGGAGGGGAACGGCAGCAGCAGGAGCAGC
AGCGTTGTCCCCGGTCGCCGCGCTGGCATCGGAAGGAGTGGCGGCGGTGC
GACGGCCAGAGCGCCGTCCCCGACAGCAGCATCGGCGGTGGCGGCATCGG
TGCCGGGGGAACAGCAGCGGCAGCAGCAGCTGCGGCGTCTGCGGTCGCCG
CATTGGCGTTGGATGTCCAGACGGCCGCAGCGGCGACGGCGTCGACATCG
GTGACGGGGGTAACGACAGCGGCGACAGCAGCAGCGGCATCCCCGGTCGC
CGCGTTGGCGTCGAGTGTCCAGACAGCCGCAGGGGTGGCGGCGGCGGCAC
CGGTGACGGAGGAACGGGAGTGGAAGCTCTGGCGGCGGCAACGACGGCGG
CCGCAGTAGCGACGGGAGTGGCGGCTTCGGCCAGAGCTCCTGCGGCGACA
CCGGCGGCAGCAGGAGCAGCGACGGGAGTGGTGGCTTCGGCCAGAGCTCG
GACGGCAGCAGCAGACGGCAGCGGCGGCTTCGGCCAGAGCCCCGTCGGCG
GCNTGGGGTGGCGTCCTTCGATAGGGGCAGGAACGGGAGTGGAAGCTCTG
GCGGCGGCAACGACGGCGGCCGCAGTAGCGACGGGAGTGGCGGCTTCGGC
CAGAGCTCCTGCGGCGACACCGGCGGCAGCAGGAGCAGCGACGGGAGTGG
TGGCTTCGGCCAGAGCTCGGACGGCAGCAGCAGACGGCAGCGGCGGCTTC
GGCCAGAGCCCCGTCGGCGGCAGCGGCGACAACGGCGGCGGGGGTAGAGG
CGGCAGCAGCGACGTCACCGGCAGCCGTGTTGGCGCTGGAACTCATGACA
GTTGTGGCGGCGGGGGAAGTGCAACGGCGGCGATGGCAGCGGCGGCAGCA
GCAGTGGCGCCCTCGAGTCGACCGGGAACGGGTAGGACACGGTGA