Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FH65 |
| ProteomeId | EsuBft104_16 |
| Protein domains | PTHR13748 |
| Protein domains | IPR003495 |
| Protein domains | IPR027417 |
| Protein domains | IPR011629 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | cobw domain-containing protein 3 os:homo sapiens gn:cbwd3 pe:2 sv:1 [Automatic annotation] |
| Nb exon | 1 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1272 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.24e-278 |
| EggNOG OGs | COG0523@1|root,KOG2743@2759|Eukaryota |
| Ec32 ortholog description | P-loop containing nucleoside triphosphate hydrolase |
| Ec32 ortholog | Ec-13_000940.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | ATP binding |
| COG category | F |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft104_16a-0001 ID=EsuBft104_16a-0001|Name=EsuBft104_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1272bp|location=Sequence derived from alignment at Scaffold_255:454682..455953- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGAACGGCTGCATCTGCTGCACGGTCCGCGGCGACCTCGTCGAGGCGCT
GAAGCGCATGAGCAAGAAGCTGTCTGCCTTCGACGCTGTCCTGATCGAGA
CTACCGGTATGGCTGACCCCGCCCCTGTGGCGCAGACCTTTTTCGTCGAT
GACGAGGTGCAGGAGAAGTTTCGTCTGGACGGCATCGTGACAGTCGTCGA
CGCGGCACACGTAGAGCAGCATCTGGACGAGGAGAAGCCCGAGAATGTCG
AAAACGAGTCCATCGAGCAGATCGCCTTCGCTGACCTCGTCATCCTGAAC
AAGACCGACCTGCTGTGCAAGAAGGACGAAAAGCTGGCCGCCGCCGCCGC
CGACGACGACGGTGCCTGCAACGAGACCGACGCCCGAGCCCCCTACGGCA
ACAACGCCATGCCCCCGACCGACGCCGACACGGCCAAGGACGCTTCCAAG
ACGCCGGTCGAGGGGGCCCTGGCCAAGCTCGAGGCGCGCATCCGCTCCAT
CAACCCGTCCGCTCCAATCATTCGCTCCGAGTTCTCTCGCGTGCCGCCGA
AGAAGCTGCTGAACCTGTCCGCCTTCGACCTCCAGCGCGTGCTTGAGATG
GACCCCGAGTTTCTTGAGAGCGACGGCACCGACCACGTGCACGACGACTC
CATTTCCTCCGTTGCCTGGTCCTTCCCGGGCCTGGAGCTGAACGTCAACC
TCCTGCAGCTTTTCATCAGCAAGCTGATGCAGGAGCTTGGCACGGAGCTC
TTCCGCTACAAGGGCGTCCTCGCTGTCAAGGGCTGCCAGGAGAAGTTCGT
CTTCCAGGGCGTGCACATGCTCTTCTCCGGCGGCTTCGCCTCGGAGGCGA
TGGGCCCCGAGTCCGTCGAGATCGACCCCAAGATGAGGCCGAACGGCGAC
GGCACGAAGGCCACACCGCCGGGGCTCTGGGCCAGCGACGACGAGCGCGA
GTGCCGCTTCATCTTCATCGGCAAGCACATGAAGGATAAGCACGCTGAGC
GCCTCAAAAAGGAATTCCTCGCGTGCGCCGCTGAGGACCCTCTGCGCTTC
GCCGTCGGCGACTACGTCGAGGCACGCGCCAGCGGTGGCTGGAAGATGGC
CAGGGTCCTGAAGACCTGGGACGCCGGCAACTGCTACCGCCTCGAGCTCC
AGAACGCCCGTAAGACCAACGTGTGGGGTCCCATCGACGACGAAGCGTTT
GTGCGCCAGCCCGACGAGGCCGAGGTCGCTGCGGCTAAGGCCAAGGCTGC
GGGCCAGAAGCAGAAGGTCTAA back to topprotein sequence of EsuBft104_16a-0001 >EsuBft104_16 ID=EsuBft104_16|Name=EsuBft104_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=423bp
MNGCICCTVRGDLVEALKRMSKKLSAFDAVLIETTGMADPAPVAQTFFVD
DEVQEKFRLDGIVTVVDAAHVEQHLDEEKPENVENESIEQIAFADLVILN
KTDLLCKKDEKLAAAAADDDGACNETDARAPYGNNAMPPTDADTAKDASK
TPVEGALAKLEARIRSINPSAPIIRSEFSRVPPKKLLNLSAFDLQRVLEM
DPEFLESDGTDHVHDDSISSVAWSFPGLELNVNLLQLFISKLMQELGTEL
FRYKGVLAVKGCQEKFVFQGVHMLFSGGFASEAMGPESVEIDPKMRPNGD
GTKATPPGLWASDDERECRFIFIGKHMKDKHAERLKKEFLACAAEDPLRF
AVGDYVEARASGGWKMARVLKTWDAGNCYRLELQNARKTNVWGPIDDEAF
VRQPDEAEVAAAKAKAAGQKQKV back to topmRNA from alignment at Scaffold_255:454682..455953- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft104_16a-0001 ID=EsuBft104_16a-0001|Name=EsuBft104_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1272bp|location=Sequence derived from alignment at Scaffold_255:454682..455953- (Ectocarpus subulatus male Bft15b)
ATGAACGGCTGCATCTGCTGCACGGTCCGCGGCGACCTCGTCGAGGCGCT
GAAGCGCATGAGCAAGAAGCTGTCTGCCTTCGACGCTGTCCTGATCGAGA
CTACCGGTATGGCTGACCCCGCCCCTGTGGCGCAGACCTTTTTCGTCGAT
GACGAGGTGCAGGAGAAGTTTCGTCTGGACGGCATCGTGACAGTCGTCGA
CGCGGCACACGTAGAGCAGCATCTGGACGAGGAGAAGCCCGAGAATGTCG
AAAACGAGTCCATCGAGCAGATCGCCTTCGCTGACCTCGTCATCCTGAAC
AAGACCGACCTGCTGTGCAAGAAGGACGAAAAGCTGGCCGCCGCCGCCGC
CGACGACGACGGTGCCTGCAACGAGACCGACGCCCGAGCCCCCTACGGCA
ACAACGCCATGCCCCCGACCGACGCCGACACGGCCAAGGACGCTTCCAAG
ACGCCGGTCGAGGGGGCCCTGGCCAAGCTCGAGGCGCGCATCCGCTCCAT
CAACCCGTCCGCTCCAATCATTCGCTCCGAGTTCTCTCGCGTGCCGCCGA
AGAAGCTGCTGAACCTGTCCGCCTTCGACCTCCAGCGCGTGCTTGAGATG
GACCCCGAGTTTCTTGAGAGCGACGGCACCGACCACGTGCACGACGACTC
CATTTCCTCCGTTGCCTGGTCCTTCCCGGGCCTGGAGCTGAACGTCAACC
TCCTGCAGCTTTTCATCAGCAAGCTGATGCAGGAGCTTGGCACGGAGCTC
TTCCGCTACAAGGGCGTCCTCGCTGTCAAGGGCTGCCAGGAGAAGTTCGT
CTTCCAGGGCGTGCACATGCTCTTCTCCGGCGGCTTCGCCTCGGAGGCGA
TGGGCCCCGAGTCCGTCGAGATCGACCCCAAGATGAGGCCGAACGGCGAC
GGCACGAAGGCCACACCGCCGGGGCTCTGGGCCAGCGACGACGAGCGCGA
GTGCCGCTTCATCTTCATCGGCAAGCACATGAAGGATAAGCACGCTGAGC
GCCTCAAAAAGGAATTCCTCGCGTGCGCCGCTGAGGACCCTCTGCGCTTC
GCCGTCGGCGACTACGTCGAGGCACGCGCCAGCGGTGGCTGGAAGATGGC
CAGGGTCCTGAAGACCTGGGACGCCGGCAACTGCTACCGCCTCGAGCTCC
AGAACGCCCGTAAGACCAACGTGTGGGGTCCCATCGACGACGAAGCGTTT
GTGCGCCAGCCCGACGAGGCCGAGGTCGCTGCGGCTAAGGCCAAGGCTGC
GGGCCAGAAGCAGAAGGTCTAA back to topCoding sequence (CDS) from alignment at Scaffold_255:454682..455953- >EsuBft104_16a-0001 ID=EsuBft104_16a-0001|Name=EsuBft104_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1272bp|location=Sequence derived from alignment at Scaffold_255:454682..455953- (Ectocarpus subulatus male Bft15b)
ATGAACGGCTGCATCTGCTGCACGGTCCGCGGCGACCTCGTCGAGGCGCT
GAAGCGCATGAGCAAGAAGCTGTCTGCCTTCGACGCTGTCCTGATCGAGA
CTACCGGTATGGCTGACCCCGCCCCTGTGGCGCAGACCTTTTTCGTCGAT
GACGAGGTGCAGGAGAAGTTTCGTCTGGACGGCATCGTGACAGTCGTCGA
CGCGGCACACGTAGAGCAGCATCTGGACGAGGAGAAGCCCGAGAATGTCG
AAAACGAGTCCATCGAGCAGATCGCCTTCGCTGACCTCGTCATCCTGAAC
AAGACCGACCTGCTGTGCAAGAAGGACGAAAAGCTGGCCGCCGCCGCCGC
CGACGACGACGGTGCCTGCAACGAGACCGACGCCCGAGCCCCCTACGGCA
ACAACGCCATGCCCCCGACCGACGCCGACACGGCCAAGGACGCTTCCAAG
ACGCCGGTCGAGGGGGCCCTGGCCAAGCTCGAGGCGCGCATCCGCTCCAT
CAACCCGTCCGCTCCAATCATTCGCTCCGAGTTCTCTCGCGTGCCGCCGA
AGAAGCTGCTGAACCTGTCCGCCTTCGACCTCCAGCGCGTGCTTGAGATG
GACCCCGAGTTTCTTGAGAGCGACGGCACCGACCACGTGCACGACGACTC
CATTTCCTCCGTTGCCTGGTCCTTCCCGGGCCTGGAGCTGAACGTCAACC
TCCTGCAGCTTTTCATCAGCAAGCTGATGCAGGAGCTTGGCACGGAGCTC
TTCCGCTACAAGGGCGTCCTCGCTGTCAAGGGCTGCCAGGAGAAGTTCGT
CTTCCAGGGCGTGCACATGCTCTTCTCCGGCGGCTTCGCCTCGGAGGCGA
TGGGCCCCGAGTCCGTCGAGATCGACCCCAAGATGAGGCCGAACGGCGAC
GGCACGAAGGCCACACCGCCGGGGCTCTGGGCCAGCGACGACGAGCGCGA
GTGCCGCTTCATCTTCATCGGCAAGCACATGAAGGATAAGCACGCTGAGC
GCCTCAAAAAGGAATTCCTCGCGTGCGCCGCTGAGGACCCTCTGCGCTTC
GCCGTCGGCGACTACGTCGAGGCACGCGCCAGCGGTGGCTGGAAGATGGC
CAGGGTCCTGAAGACCTGGGACGCCGGCAACTGCTACCGCCTCGAGCTCC
AGAACGCCCGTAAGACCAACGTGTGGGGTCCCATCGACGACGAAGCGTTT
GTGCGCCAGCCCGACGAGGCCGAGGTCGCTGCGGCTAAGGCCAAGGCTGC
GGGCCAGAAGCAGAAGGTCTAA back to top
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