EsuBft104_16a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft104_16a-0001
Unique Name	EsuBft104_16a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_255	contig	Scaffold_255:454682..455953 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FH65
ProteomeId	EsuBft104_16
Protein domains	PTHR13748
Protein domains	IPR003495
Protein domains	IPR027417
Protein domains	IPR011629
Owner	apollo_admin@sb-roscoff.fr
Note	cobw domain-containing protein 3 os:homo sapiens gn:cbwd3 pe:2 sv:1 [Automatic annotation]
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	1272
Hectar predicted targeting category	other localisation
Evalue	1.24e-278
EggNOG OGs	COG0523@1\|root,KOG2743@2759\|Eukaryota
Ec32 ortholog description	P-loop containing nucleoside triphosphate hydrolase
Ec32 ortholog	Ec-13_000940.1
Date last modified	2016-06-14
Date creation	2016-06-14
Description	ATP binding
COG category	F

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft104_16a	EsuBft104_16a	Ectocarpus subulatus male Bft15b	gene	Scaffold_255 454682..455953 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft104_16a-0001-exon	EsuBft104_16a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_255 454682..455953 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft104_16a-0001-cds	EsuBft104_16a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_255 454682..455953 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft104_16a-0001	EsuBft104_16	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_255 454682..455953 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_255:454682..455953-
coding sequence from alignment at Scaffold_255:454682..455953-

spliced messenger RNA

>EsuBft104_16a-0001 ID=EsuBft104_16a-0001|Name=EsuBft104_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1272bp|location=Sequence derived from alignment at Scaffold_255:454682..455953- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGGCTGCATCTGCTGCACGGTCCGCGGCGACCTCGTCGAGGCGCT
GAAGCGCATGAGCAAGAAGCTGTCTGCCTTCGACGCTGTCCTGATCGAGA
CTACCGGTATGGCTGACCCCGCCCCTGTGGCGCAGACCTTTTTCGTCGAT
GACGAGGTGCAGGAGAAGTTTCGTCTGGACGGCATCGTGACAGTCGTCGA
CGCGGCACACGTAGAGCAGCATCTGGACGAGGAGAAGCCCGAGAATGTCG
AAAACGAGTCCATCGAGCAGATCGCCTTCGCTGACCTCGTCATCCTGAAC
AAGACCGACCTGCTGTGCAAGAAGGACGAAAAGCTGGCCGCCGCCGCCGC
CGACGACGACGGTGCCTGCAACGAGACCGACGCCCGAGCCCCCTACGGCA
ACAACGCCATGCCCCCGACCGACGCCGACACGGCCAAGGACGCTTCCAAG
ACGCCGGTCGAGGGGGCCCTGGCCAAGCTCGAGGCGCGCATCCGCTCCAT
CAACCCGTCCGCTCCAATCATTCGCTCCGAGTTCTCTCGCGTGCCGCCGA
AGAAGCTGCTGAACCTGTCCGCCTTCGACCTCCAGCGCGTGCTTGAGATG
GACCCCGAGTTTCTTGAGAGCGACGGCACCGACCACGTGCACGACGACTC
CATTTCCTCCGTTGCCTGGTCCTTCCCGGGCCTGGAGCTGAACGTCAACC
TCCTGCAGCTTTTCATCAGCAAGCTGATGCAGGAGCTTGGCACGGAGCTC
TTCCGCTACAAGGGCGTCCTCGCTGTCAAGGGCTGCCAGGAGAAGTTCGT
CTTCCAGGGCGTGCACATGCTCTTCTCCGGCGGCTTCGCCTCGGAGGCGA
TGGGCCCCGAGTCCGTCGAGATCGACCCCAAGATGAGGCCGAACGGCGAC
GGCACGAAGGCCACACCGCCGGGGCTCTGGGCCAGCGACGACGAGCGCGA
GTGCCGCTTCATCTTCATCGGCAAGCACATGAAGGATAAGCACGCTGAGC
GCCTCAAAAAGGAATTCCTCGCGTGCGCCGCTGAGGACCCTCTGCGCTTC
GCCGTCGGCGACTACGTCGAGGCACGCGCCAGCGGTGGCTGGAAGATGGC
CAGGGTCCTGAAGACCTGGGACGCCGGCAACTGCTACCGCCTCGAGCTCC
AGAACGCCCGTAAGACCAACGTGTGGGGTCCCATCGACGACGAAGCGTTT
GTGCGCCAGCCCGACGAGGCCGAGGTCGCTGCGGCTAAGGCCAAGGCTGC
GGGCCAGAAGCAGAAGGTCTAA

protein sequence of EsuBft104_16a-0001

>EsuBft104_16 ID=EsuBft104_16|Name=EsuBft104_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=423bp
MNGCICCTVRGDLVEALKRMSKKLSAFDAVLIETTGMADPAPVAQTFFVD
DEVQEKFRLDGIVTVVDAAHVEQHLDEEKPENVENESIEQIAFADLVILN
KTDLLCKKDEKLAAAAADDDGACNETDARAPYGNNAMPPTDADTAKDASK
TPVEGALAKLEARIRSINPSAPIIRSEFSRVPPKKLLNLSAFDLQRVLEM
DPEFLESDGTDHVHDDSISSVAWSFPGLELNVNLLQLFISKLMQELGTEL
FRYKGVLAVKGCQEKFVFQGVHMLFSGGFASEAMGPESVEIDPKMRPNGD
GTKATPPGLWASDDERECRFIFIGKHMKDKHAERLKKEFLACAAEDPLRF
AVGDYVEARASGGWKMARVLKTWDAGNCYRLELQNARKTNVWGPIDDEAF
VRQPDEAEVAAAKAKAAGQKQKV

mRNA from alignment at Scaffold_255:454682..455953-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft104_16a-0001 ID=EsuBft104_16a-0001|Name=EsuBft104_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1272bp|location=Sequence derived from alignment at Scaffold_255:454682..455953- (Ectocarpus subulatus male Bft15b)
ATGAACGGCTGCATCTGCTGCACGGTCCGCGGCGACCTCGTCGAGGCGCT
GAAGCGCATGAGCAAGAAGCTGTCTGCCTTCGACGCTGTCCTGATCGAGA
CTACCGGTATGGCTGACCCCGCCCCTGTGGCGCAGACCTTTTTCGTCGAT
GACGAGGTGCAGGAGAAGTTTCGTCTGGACGGCATCGTGACAGTCGTCGA
CGCGGCACACGTAGAGCAGCATCTGGACGAGGAGAAGCCCGAGAATGTCG
AAAACGAGTCCATCGAGCAGATCGCCTTCGCTGACCTCGTCATCCTGAAC
AAGACCGACCTGCTGTGCAAGAAGGACGAAAAGCTGGCCGCCGCCGCCGC
CGACGACGACGGTGCCTGCAACGAGACCGACGCCCGAGCCCCCTACGGCA
ACAACGCCATGCCCCCGACCGACGCCGACACGGCCAAGGACGCTTCCAAG
ACGCCGGTCGAGGGGGCCCTGGCCAAGCTCGAGGCGCGCATCCGCTCCAT
CAACCCGTCCGCTCCAATCATTCGCTCCGAGTTCTCTCGCGTGCCGCCGA
AGAAGCTGCTGAACCTGTCCGCCTTCGACCTCCAGCGCGTGCTTGAGATG
GACCCCGAGTTTCTTGAGAGCGACGGCACCGACCACGTGCACGACGACTC
CATTTCCTCCGTTGCCTGGTCCTTCCCGGGCCTGGAGCTGAACGTCAACC
TCCTGCAGCTTTTCATCAGCAAGCTGATGCAGGAGCTTGGCACGGAGCTC
TTCCGCTACAAGGGCGTCCTCGCTGTCAAGGGCTGCCAGGAGAAGTTCGT
CTTCCAGGGCGTGCACATGCTCTTCTCCGGCGGCTTCGCCTCGGAGGCGA
TGGGCCCCGAGTCCGTCGAGATCGACCCCAAGATGAGGCCGAACGGCGAC
GGCACGAAGGCCACACCGCCGGGGCTCTGGGCCAGCGACGACGAGCGCGA
GTGCCGCTTCATCTTCATCGGCAAGCACATGAAGGATAAGCACGCTGAGC
GCCTCAAAAAGGAATTCCTCGCGTGCGCCGCTGAGGACCCTCTGCGCTTC
GCCGTCGGCGACTACGTCGAGGCACGCGCCAGCGGTGGCTGGAAGATGGC
CAGGGTCCTGAAGACCTGGGACGCCGGCAACTGCTACCGCCTCGAGCTCC
AGAACGCCCGTAAGACCAACGTGTGGGGTCCCATCGACGACGAAGCGTTT
GTGCGCCAGCCCGACGAGGCCGAGGTCGCTGCGGCTAAGGCCAAGGCTGC
GGGCCAGAAGCAGAAGGTCTAA

Coding sequence (CDS) from alignment at Scaffold_255:454682..455953-

>EsuBft104_16a-0001 ID=EsuBft104_16a-0001|Name=EsuBft104_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1272bp|location=Sequence derived from alignment at Scaffold_255:454682..455953- (Ectocarpus subulatus male Bft15b)
ATGAACGGCTGCATCTGCTGCACGGTCCGCGGCGACCTCGTCGAGGCGCT
GAAGCGCATGAGCAAGAAGCTGTCTGCCTTCGACGCTGTCCTGATCGAGA
CTACCGGTATGGCTGACCCCGCCCCTGTGGCGCAGACCTTTTTCGTCGAT
GACGAGGTGCAGGAGAAGTTTCGTCTGGACGGCATCGTGACAGTCGTCGA
CGCGGCACACGTAGAGCAGCATCTGGACGAGGAGAAGCCCGAGAATGTCG
AAAACGAGTCCATCGAGCAGATCGCCTTCGCTGACCTCGTCATCCTGAAC
AAGACCGACCTGCTGTGCAAGAAGGACGAAAAGCTGGCCGCCGCCGCCGC
CGACGACGACGGTGCCTGCAACGAGACCGACGCCCGAGCCCCCTACGGCA
ACAACGCCATGCCCCCGACCGACGCCGACACGGCCAAGGACGCTTCCAAG
ACGCCGGTCGAGGGGGCCCTGGCCAAGCTCGAGGCGCGCATCCGCTCCAT
CAACCCGTCCGCTCCAATCATTCGCTCCGAGTTCTCTCGCGTGCCGCCGA
AGAAGCTGCTGAACCTGTCCGCCTTCGACCTCCAGCGCGTGCTTGAGATG
GACCCCGAGTTTCTTGAGAGCGACGGCACCGACCACGTGCACGACGACTC
CATTTCCTCCGTTGCCTGGTCCTTCCCGGGCCTGGAGCTGAACGTCAACC
TCCTGCAGCTTTTCATCAGCAAGCTGATGCAGGAGCTTGGCACGGAGCTC
TTCCGCTACAAGGGCGTCCTCGCTGTCAAGGGCTGCCAGGAGAAGTTCGT
CTTCCAGGGCGTGCACATGCTCTTCTCCGGCGGCTTCGCCTCGGAGGCGA
TGGGCCCCGAGTCCGTCGAGATCGACCCCAAGATGAGGCCGAACGGCGAC
GGCACGAAGGCCACACCGCCGGGGCTCTGGGCCAGCGACGACGAGCGCGA
GTGCCGCTTCATCTTCATCGGCAAGCACATGAAGGATAAGCACGCTGAGC
GCCTCAAAAAGGAATTCCTCGCGTGCGCCGCTGAGGACCCTCTGCGCTTC
GCCGTCGGCGACTACGTCGAGGCACGCGCCAGCGGTGGCTGGAAGATGGC
CAGGGTCCTGAAGACCTGGGACGCCGGCAACTGCTACCGCCTCGAGCTCC
AGAACGCCCGTAAGACCAACGTGTGGGGTCCCATCGACGACGAAGCGTTT
GTGCGCCAGCCCGACGAGGCCGAGGTCGCTGCGGCTAAGGCCAAGGCTGC
GGGCCAGAAGCAGAAGGTCTAA