Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LN28 |
| ProteomeId | EsuBft1049_9 |
| Protein domains | PTHR19303 |
| Protein domains | IPR004875 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 213 |
| Evalue | 1.23e-36 |
| EggNOG OGs | 2CZS4@1|root,2SBGG@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | DDE superfamily endonuclease |
| COG category | S |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003676 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1049_9a-0001 ID=EsuBft1049_9a-0001|Name=EsuBft1049_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2136bp|location=Sequence derived from alignment at Scaffold_133:419053..421271- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCACGCGCGTTCTCCGGTGTGCGTTGTAGGCTTCACCCCGCAAGGTAC
AAAGTCGGGGAAGGCTATCGTGCCAACAGGCACCAAGGTGCCCGGCGCCA
GGCGCTCCACCTCGCGAGAAAATACGACGGTGGTCGCCAGCATCGGCGCC
GACGGCCCCACCTACAACCCTATCATCATCTACAAAGGCCAGCGTATGCA
ACCCGTTNTGATTGTTCGACTGCCTCCACCCCCGATGCACGCGCGTTCTC
CGGTGTGCGTTGTAGGCTTCACCCCGCAAGGTACAAAGTCGGGGAAGGCT
ATCGTGCCAACAGGCACCAAGGTGCCCGGCGCCAGGCGCTCCACCTCGCG
AGAAAATACGACGGTGGTCGCCAGCATCGGCGCCGACGGCCCCACCTACA
ACCCTATCATCATCTACAAAGGCCAGCGTATGCAACCCGTTTGGATCCAG
GACAAGAACGGCGTCCCCGATGCGAAGTACACCGTCACGGAGTCATCCTT
CGTCCGGAGCCACGTGTTCCTCGACTACCTTCAAGACCTCCGCGAACAGC
TCGATGCACGCGGCTTGCAGGTTGCCCTTGTGCTCGACGACCACGCCTCG
CACACGACCTTCCACGCCATCAGCTTGGCCATCTCTCTGGACATCGACCT
CTTCCAGCTTCCGTCCCACACATCGCACATCACCCAGCCCTTGGACGTTG
CGCGACATGGCTGGCGTGNCAAGAACGGCGTCCCCGATGCGAAGTACACC
GTCACGGAGTCATCCTTCGTCCGGAGCCACGTGTTCCTCGACTACCTTCA
AGACCTCCGCGAACAGCTCGATGCACGCGGCTTGCAGGTTGCCCTTGTGC
TCGACGACCACGCCTCGCACACGACCTTCCACGCCATCAGCTTGGCCATC
TCTCTGGACATCGACCTCTTCCAGCTTCCGTCCCACACATCGCACATCAC
CCAGCCCTTGGACGTTGGTACGTTCGGAACCTTCAAGAAGGAGCTCACAA
GGGTGCTCACGGCCTACCCCCTGAAAATCGGGGGGAGGAGTCCAGTGCAG
CGCGACATGGCTGGCGTGATTGCGGAGGCATGGAGAGGGAGCTTCACGCC
TGCGAATAACATGACGGCGTTCAAAGGAGCGGGCTTGTGGCCGGTGAACA
TGGAGAAAGCCATCAACCGACTACACAGCAAGAGGAAGCAATGGGAGAAT
GACCGTCCTAGCCCTGAAGACCTCGCCGTCGTTGCCTCCAAGAAGCAGCT
CGAAGAAGATCTCGGCCACGCTGCCCTCCTGGAGCTGAAACGACAGGGAG
TGATGATCGAGGGCCTCCGCGTGAACACCGTGTTCCTCGGCGGGCTCACC
CGCCTCACCAGGCGCTCCAAGTCTTTCGCGACCGTTCGGGCGGGCGGGAG
GAAGCCCGAGGGCGGTCTCCTGTCCGCCGAAGAACACCTTGCTAAGGCAA
AAACGGTACGCGGACGGAGGTCGGGGGGCGCGGCTGTGGTGGGGGTCAGG
AAGGGCGAGACGGGCGCGGCCAGGGACAGGTTGGCCGGGGCCTCCCCGCT
GGTGCTCGCGGAGAGGGAAGAGGCGCTCGTGGGCGGGTGGGGCCCGGTGC
TCGCGTCCAAGGAGGAGTGGGACGGCCGAGAAGGGCGGTGGTTCCCTTGG
TTCAGCCGCCGCCGCCGGCGGCTCCTTTTTCCTCTCGAGGACGGCAACGA
ACTTCGACACCAATCGTTGATGTGTAGACCAGATGCTGTACGGCTATCGA
TTTATTCGAGTGAAGGATGAATTATTCGAGTGAGACATACAGAAAACGTC
AGTTAGTGTCGAGGTGCCGATATGCATTTCGGGGTTGTGCTTCAACAGCT
TTTGGGGGTAGTTTTCGAGCGTCCCACGGGGGGGGGGGGGGATGGGGGGT
GTAGCGGTGTTTTCCAGCACCCCGGGGACGTGGAAATGCTGCCCCCGGGC
CTGAAGGGCTATTGATTTTTTTTGCTGCTTCGCGACTTGAGCTGATCGTC
TTGAAAGGACCTTTCGATGGGGCCTTCGAGTTGTAAGAAACAGGTGCGAT
TTTCTACGAGAAGTCTCACGGCAGTGCCAAGCTGCTTTTTGCCTGGCCCA
GTATACGTGCTGAATGTATGTAGTCTATGTTAAGAG back to topprotein sequence of EsuBft1049_9a-0001 >EsuBft1049_9 ID=EsuBft1049_9|Name=EsuBft1049_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=589bp
MHARSPVCVVGFTPQGTKSGKAIVPTGTKVPGARRSTSRENTTVVASIGA
DGPTYNPIIIYKGQRMQPVXIVRLPPPPMHARSPVCVVGFTPQGTKSGKA
IVPTGTKVPGARRSTSRENTTVVASIGADGPTYNPIIIYKGQRMQPVWIQ
DKNGVPDAKYTVTESSFVRSHVFLDYLQDLREQLDARGLQVALVLDDHAS
HTTFHAISLAISLDIDLFQLPSHTSHITQPLDVARHGWRXKNGVPDAKYT
VTESSFVRSHVFLDYLQDLREQLDARGLQVALVLDDHASHTTFHAISLAI
SLDIDLFQLPSHTSHITQPLDVGTFGTFKKELTRVLTAYPLKIGGRSPVQ
RDMAGVIAEAWRGSFTPANNMTAFKGAGLWPVNMEKAINRLHSKRKQWEN
DRPSPEDLAVVASKKQLEEDLGHAALLELKRQGVMIEGLRVNTVFLGGLT
RLTRRSKSFATVRAGGRKPEGGLLSAEEHLAKAKTVRGRRSGGAAVVGVR
KGETGAARDRLAGASPLVLAEREEALVGGWGPVLASKEEWDGREGRWFPW
FSRRRRRLLFPLEDGNELRHQSLMCRPDAVRLSIYSSEG back to topmRNA from alignment at Scaffold_133:419053..421271- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1049_9a-0001 ID=EsuBft1049_9a-0001|Name=EsuBft1049_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2219bp|location=Sequence derived from alignment at Scaffold_133:419053..421271- (Ectocarpus subulatus male Bft15b)
ATGCACGCGCGTTCTCCGGTGTGCGTTGTAGGCTTCACCCCGCAAGGTAC
AAAGTCGGGGAAGGCTATCGTGCCAACAGGCACCAAGGTGCCCGGCGCCA
GGCGCTCCACCTCGCGAGAAAATACGACGGTGGTCGCCAGCATCGGCGCC
GACGGCCCCACCTACAACCCTATCATCATCTACAAAGGCCAGCGTATGCA
ACCCGTTNTGATTGTTCGACTGCCTCCACCCCCGATGCACGCGCGTTCTC
CGGTGTGCGTTGTAGGCTTCACCCCGCAAGGTACAAAGTCGGGGAAGGCT
ATCGTGCCAACAGGCACCAAGGTGCCCGGCGCCAGGCGCTCCACCTCGCG
AGAAAATACGACGGTGGTCGCCAGCATCGGCGCCGACGGCCCCACCTACA
ACCCTATCATCATCTACAAAGGCCAGCGTATGCAACCCGTTTGGATCCAG
GACAAGAACGGCGTCCCCGATGCGAAGTACACCGTCACGGAGTCATCCTT
CGTCCGGAGCCACGTGTTCCTCGACTACCTTCAAGACCTCCGCGAACAGC
TCGATGCACGCGGCTTGCAGGTTGCCCTTGTGCTCGACGACCACGCCTCG
CACACGACCTTCCACGCCATCAGCTTGGCCATCTCTCTGGACATCGACCT
CTTCCAGCTTCCGTCCCACACATCGCACATCACCCAGCCCTTGGACGTTG
GTACGTTCGGAACCTTCAAGAAGGAGCTCACAAGGGTGCTCACGGCCTAC
CCCCTGAAAATCGGGGGGAGGAGTCCAGTGCAGCGCGACATGGCTGGCGT
GNCAAGAACGGCGTCCCCGATGCGAAGTACACCGTCACGGAGTCATCCTT
CGTCCGGAGCCACGTGTTCCTCGACTACCTTCAAGACCTCCGCGAACAGC
TCGATGCACGCGGCTTGCAGGTTGCCCTTGTGCTCGACGACCACGCCTCG
CACACGACCTTCCACGCCATCAGCTTGGCCATCTCTCTGGACATCGACCT
CTTCCAGCTTCCGTCCCACACATCGCACATCACCCAGCCCTTGGACGTTG
GTACGTTCGGAACCTTCAAGAAGGAGCTCACAAGGGTGCTCACGGCCTAC
CCCCTGAAAATCGGGGGGAGGAGTCCAGTGCAGCGCGACATGGCTGGCGT
GATTGCGGAGGCATGGAGAGGGAGCTTCACGCCTGCGAATAACATGACGG
CGTTCAAAGGAGCGGGCTTGTGGCCGGTGAACATGGAGAAAGCCATCAAC
CGACTACACAGCAAGAGGAAGCAATGGGAGAATGACCGTCCTAGCCCTGA
AGACCTCGCCGTCGTTGCCTCCAAGAAGCAGCTCGAAGAAGATCTCGGCC
ACGCTGCCCTCCTGGAGCTGAAACGACAGGGAGTGATGATCGAGGGCCTC
CGCGTGAACACCGTGTTCCTCGGCGGGCTCACCCGCCTCACCAGGCGCTC
CAAGTCTTTCGCGACCGTTCGGGCGGGCGGGAGGAAGCCCGAGGGCGGTC
TCCTGTCCGCCGAAGAACACCTTGCTAAGGCAAAAACGGTACGCGGACGG
AGGTCGGGGGGCGCGGCTGTGGTGGGGGTCAGGAAGGGCGAGACGGGCGC
GGCCAGGGACAGGTTGGCCGGGGCCTCCCCGCTGGTGCTCGCGGAGAGGG
AAGAGGCGCTCGTGGGCGGGTGGGGCCCGGTGCTCGCGTCCAAGGAGGAG
TGGGACGGCCGAGAAGGGCGGTGGTTCCCTTGGTTCAGCCGCCGCCGCCG
GCGGCTCCTTTTTCCTCTCGAGGACGGCAACGAACTTCGACACCAATCGT
TGATGTGTAGACCAGATGCTGTACGGCTATCGATTTATTCGAGTGAAGGA
TGAATTATTCGAGTGAGACATACAGAAAACGTCAGTTAGTGTCGAGGTGC
CGATATGCATTTCGGGGTTGTGCTTCAACAGCTTTTGGGGGTAGTTTTCG
AGCGTCCCACGGGGGGGGGGGGGGATGGGGGGTGTAGCGGTGTTTTCCAG
CACCCCGGGGACGTGGAAATGCTGCCCCCGGGCCTGAAGGGCTATTGATT
TTTTTTGCTGCTTCGCGACTTGAGCTGATCGTCTTGAAAGGACCTTTCGA
TGGGGCCTTCGAGTTGTAAGAAACAGGTGCGATTTTCTACGAGAAGTCTC
ACGGCAGTGCCAAGCTGCTTTTTGCCTGGCCCAGTATACGTGCTGAATGT
ATGTAGTCTATGTTAAGAG back to topCoding sequence (CDS) from alignment at Scaffold_133:419053..421271- >EsuBft1049_9a-0001 ID=EsuBft1049_9a-0001|Name=EsuBft1049_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1770bp|location=Sequence derived from alignment at Scaffold_133:419053..421271- (Ectocarpus subulatus male Bft15b)
ATGCACGCGCGTTCTCCGGTGTGCGTTGTAGGCTTCACCCCGCAAGGTAC
AAAGTCGGGGAAGGCTATCGTGCCAACAGGCACCAAGGTGCCCGGCGCCA
GGCGCTCCACCTCGCGAGAAAATACGACGGTGGTCGCCAGCATCGGCGCC
GACGGCCCCACCTACAACCCTATCATCATCTACAAAGGCCAGCGTATGCA
ACCCGTTNTGATTGTTCGACTGCCTCCACCCCCGATGCACGCGCGTTCTC
CGGTGTGCGTTGTAGGCTTCACCCCGCAAGGTACAAAGTCGGGGAAGGCT
ATCGTGCCAACAGGCACCAAGGTGCCCGGCGCCAGGCGCTCCACCTCGCG
AGAAAATACGACGGTGGTCGCCAGCATCGGCGCCGACGGCCCCACCTACA
ACCCTATCATCATCTACAAAGGCCAGCGTATGCAACCCGTTTGGATCCAG
GACAAGAACGGCGTCCCCGATGCGAAGTACACCGTCACGGAGTCATCCTT
CGTCCGGAGCCACGTGTTCCTCGACTACCTTCAAGACCTCCGCGAACAGC
TCGATGCACGCGGCTTGCAGGTTGCCCTTGTGCTCGACGACCACGCCTCG
CACACGACCTTCCACGCCATCAGCTTGGCCATCTCTCTGGACATCGACCT
CTTCCAGCTTCCGTCCCACACATCGCACATCACCCAGCCCTTGGACGTTG
CGCGACATGGCTGGCGTGNCAAGAACGGCGTCCCCGATGCGAAGTACACC
GTCACGGAGTCATCCTTCGTCCGGAGCCACGTGTTCCTCGACTACCTTCA
AGACCTCCGCGAACAGCTCGATGCACGCGGCTTGCAGGTTGCCCTTGTGC
TCGACGACCACGCCTCGCACACGACCTTCCACGCCATCAGCTTGGCCATC
TCTCTGGACATCGACCTCTTCCAGCTTCCGTCCCACACATCGCACATCAC
CCAGCCCTTGGACGTTGGTACGTTCGGAACCTTCAAGAAGGAGCTCACAA
GGGTGCTCACGGCCTACCCCCTGAAAATCGGGGGGAGGAGTCCAGTGCAG
CGCGACATGGCTGGCGTGATTGCGGAGGCATGGAGAGGGAGCTTCACGCC
TGCGAATAACATGACGGCGTTCAAAGGAGCGGGCTTGTGGCCGGTGAACA
TGGAGAAAGCCATCAACCGACTACACAGCAAGAGGAAGCAATGGGAGAAT
GACCGTCCTAGCCCTGAAGACCTCGCCGTCGTTGCCTCCAAGAAGCAGCT
CGAAGAAGATCTCGGCCACGCTGCCCTCCTGGAGCTGAAACGACAGGGAG
TGATGATCGAGGGCCTCCGCGTGAACACCGTGTTCCTCGGCGGGCTCACC
CGCCTCACCAGGCGCTCCAAGTCTTTCGCGACCGTTCGGGCGGGCGGGAG
GAAGCCCGAGGGCGGTCTCCTGTCCGCCGAAGAACACCTTGCTAAGGCAA
AAACGGTACGCGGACGGAGGTCGGGGGGCGCGGCTGTGGTGGGGGTCAGG
AAGGGCGAGACGGGCGCGGCCAGGGACAGGTTGGCCGGGGCCTCCCCGCT
GGTGCTCGCGGAGAGGGAAGAGGCGCTCGTGGGCGGGTGGGGCCCGGTGC
TCGCGTCCAAGGAGGAGTGGGACGGCCGAGAAGGGCGGTGGTTCCCTTGG
TTCAGCCGCCGCCGCCGGCGGCTCCTTTTTCCTCTCGAGGACGGCAACGA
ACTTCGACACCAATCGTTGATGTGTAGACCAGATGCTGTACGGCTATCGA
TTTATTCGAGTGAAGGATGA back to top
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