EsuBft1049_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1049_9a-0001
Unique Name	EsuBft1049_9a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_133	contig	Scaffold_133:419053..421271 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D8LN28
ProteomeId	EsuBft1049_9
Protein domains	PTHR19303
Protein domains	IPR004875
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	213
Evalue	1.23e-36
EggNOG OGs	2CZS4@1\|root,2SBGG@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
Description	DDE superfamily endonuclease
COG category	S

Cross References

External references for this mRNA


Database	Accession
GO	0003676

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1049_9a	EsuBft1049_9a	Ectocarpus subulatus male Bft15b	gene	Scaffold_133 419053..421271 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1049_9a-0001-exon	agat-exon-99343	Ectocarpus subulatus male Bft15b	exon	Scaffold_133 419053..420488 -
EsuBft1049_9a-0001-exon	EsuBft1049_9a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_133 420572..421271 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1049_9a-0001-exon	agat-three_prime_utr-476	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_133 419053..419418 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1049_9a-0001-cds	EsuBft1049_9a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_133 419419..420488 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1049_9a-0001	EsuBft1049_9	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_133 419419..421271 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_133:419053..421271-
coding sequence from alignment at Scaffold_133:419053..421271-

spliced messenger RNA

>EsuBft1049_9a-0001 ID=EsuBft1049_9a-0001|Name=EsuBft1049_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2136bp|location=Sequence derived from alignment at Scaffold_133:419053..421271- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGCGCGTTCTCCGGTGTGCGTTGTAGGCTTCACCCCGCAAGGTAC
AAAGTCGGGGAAGGCTATCGTGCCAACAGGCACCAAGGTGCCCGGCGCCA
GGCGCTCCACCTCGCGAGAAAATACGACGGTGGTCGCCAGCATCGGCGCC
GACGGCCCCACCTACAACCCTATCATCATCTACAAAGGCCAGCGTATGCA
ACCCGTTNTGATTGTTCGACTGCCTCCACCCCCGATGCACGCGCGTTCTC
CGGTGTGCGTTGTAGGCTTCACCCCGCAAGGTACAAAGTCGGGGAAGGCT
ATCGTGCCAACAGGCACCAAGGTGCCCGGCGCCAGGCGCTCCACCTCGCG
AGAAAATACGACGGTGGTCGCCAGCATCGGCGCCGACGGCCCCACCTACA
ACCCTATCATCATCTACAAAGGCCAGCGTATGCAACCCGTTTGGATCCAG
GACAAGAACGGCGTCCCCGATGCGAAGTACACCGTCACGGAGTCATCCTT
CGTCCGGAGCCACGTGTTCCTCGACTACCTTCAAGACCTCCGCGAACAGC
TCGATGCACGCGGCTTGCAGGTTGCCCTTGTGCTCGACGACCACGCCTCG
CACACGACCTTCCACGCCATCAGCTTGGCCATCTCTCTGGACATCGACCT
CTTCCAGCTTCCGTCCCACACATCGCACATCACCCAGCCCTTGGACGTTG
CGCGACATGGCTGGCGTGNCAAGAACGGCGTCCCCGATGCGAAGTACACC
GTCACGGAGTCATCCTTCGTCCGGAGCCACGTGTTCCTCGACTACCTTCA
AGACCTCCGCGAACAGCTCGATGCACGCGGCTTGCAGGTTGCCCTTGTGC
TCGACGACCACGCCTCGCACACGACCTTCCACGCCATCAGCTTGGCCATC
TCTCTGGACATCGACCTCTTCCAGCTTCCGTCCCACACATCGCACATCAC
CCAGCCCTTGGACGTTGGTACGTTCGGAACCTTCAAGAAGGAGCTCACAA
GGGTGCTCACGGCCTACCCCCTGAAAATCGGGGGGAGGAGTCCAGTGCAG
CGCGACATGGCTGGCGTGATTGCGGAGGCATGGAGAGGGAGCTTCACGCC
TGCGAATAACATGACGGCGTTCAAAGGAGCGGGCTTGTGGCCGGTGAACA
TGGAGAAAGCCATCAACCGACTACACAGCAAGAGGAAGCAATGGGAGAAT
GACCGTCCTAGCCCTGAAGACCTCGCCGTCGTTGCCTCCAAGAAGCAGCT
CGAAGAAGATCTCGGCCACGCTGCCCTCCTGGAGCTGAAACGACAGGGAG
TGATGATCGAGGGCCTCCGCGTGAACACCGTGTTCCTCGGCGGGCTCACC
CGCCTCACCAGGCGCTCCAAGTCTTTCGCGACCGTTCGGGCGGGCGGGAG
GAAGCCCGAGGGCGGTCTCCTGTCCGCCGAAGAACACCTTGCTAAGGCAA
AAACGGTACGCGGACGGAGGTCGGGGGGCGCGGCTGTGGTGGGGGTCAGG
AAGGGCGAGACGGGCGCGGCCAGGGACAGGTTGGCCGGGGCCTCCCCGCT
GGTGCTCGCGGAGAGGGAAGAGGCGCTCGTGGGCGGGTGGGGCCCGGTGC
TCGCGTCCAAGGAGGAGTGGGACGGCCGAGAAGGGCGGTGGTTCCCTTGG
TTCAGCCGCCGCCGCCGGCGGCTCCTTTTTCCTCTCGAGGACGGCAACGA
ACTTCGACACCAATCGTTGATGTGTAGACCAGATGCTGTACGGCTATCGA
TTTATTCGAGTGAAGGATGAATTATTCGAGTGAGACATACAGAAAACGTC
AGTTAGTGTCGAGGTGCCGATATGCATTTCGGGGTTGTGCTTCAACAGCT
TTTGGGGGTAGTTTTCGAGCGTCCCACGGGGGGGGGGGGGGATGGGGGGT
GTAGCGGTGTTTTCCAGCACCCCGGGGACGTGGAAATGCTGCCCCCGGGC
CTGAAGGGCTATTGATTTTTTTTGCTGCTTCGCGACTTGAGCTGATCGTC
TTGAAAGGACCTTTCGATGGGGCCTTCGAGTTGTAAGAAACAGGTGCGAT
TTTCTACGAGAAGTCTCACGGCAGTGCCAAGCTGCTTTTTGCCTGGCCCA
GTATACGTGCTGAATGTATGTAGTCTATGTTAAGAG

protein sequence of EsuBft1049_9a-0001

>EsuBft1049_9 ID=EsuBft1049_9|Name=EsuBft1049_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=589bp
MHARSPVCVVGFTPQGTKSGKAIVPTGTKVPGARRSTSRENTTVVASIGA
DGPTYNPIIIYKGQRMQPVXIVRLPPPPMHARSPVCVVGFTPQGTKSGKA
IVPTGTKVPGARRSTSRENTTVVASIGADGPTYNPIIIYKGQRMQPVWIQ
DKNGVPDAKYTVTESSFVRSHVFLDYLQDLREQLDARGLQVALVLDDHAS
HTTFHAISLAISLDIDLFQLPSHTSHITQPLDVARHGWRXKNGVPDAKYT
VTESSFVRSHVFLDYLQDLREQLDARGLQVALVLDDHASHTTFHAISLAI
SLDIDLFQLPSHTSHITQPLDVGTFGTFKKELTRVLTAYPLKIGGRSPVQ
RDMAGVIAEAWRGSFTPANNMTAFKGAGLWPVNMEKAINRLHSKRKQWEN
DRPSPEDLAVVASKKQLEEDLGHAALLELKRQGVMIEGLRVNTVFLGGLT
RLTRRSKSFATVRAGGRKPEGGLLSAEEHLAKAKTVRGRRSGGAAVVGVR
KGETGAARDRLAGASPLVLAEREEALVGGWGPVLASKEEWDGREGRWFPW
FSRRRRRLLFPLEDGNELRHQSLMCRPDAVRLSIYSSEG

mRNA from alignment at Scaffold_133:419053..421271-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1049_9a-0001 ID=EsuBft1049_9a-0001|Name=EsuBft1049_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2219bp|location=Sequence derived from alignment at Scaffold_133:419053..421271- (Ectocarpus subulatus male Bft15b)
ATGCACGCGCGTTCTCCGGTGTGCGTTGTAGGCTTCACCCCGCAAGGTAC
AAAGTCGGGGAAGGCTATCGTGCCAACAGGCACCAAGGTGCCCGGCGCCA
GGCGCTCCACCTCGCGAGAAAATACGACGGTGGTCGCCAGCATCGGCGCC
GACGGCCCCACCTACAACCCTATCATCATCTACAAAGGCCAGCGTATGCA
ACCCGTTNTGATTGTTCGACTGCCTCCACCCCCGATGCACGCGCGTTCTC
CGGTGTGCGTTGTAGGCTTCACCCCGCAAGGTACAAAGTCGGGGAAGGCT
ATCGTGCCAACAGGCACCAAGGTGCCCGGCGCCAGGCGCTCCACCTCGCG
AGAAAATACGACGGTGGTCGCCAGCATCGGCGCCGACGGCCCCACCTACA
ACCCTATCATCATCTACAAAGGCCAGCGTATGCAACCCGTTTGGATCCAG
GACAAGAACGGCGTCCCCGATGCGAAGTACACCGTCACGGAGTCATCCTT
CGTCCGGAGCCACGTGTTCCTCGACTACCTTCAAGACCTCCGCGAACAGC
TCGATGCACGCGGCTTGCAGGTTGCCCTTGTGCTCGACGACCACGCCTCG
CACACGACCTTCCACGCCATCAGCTTGGCCATCTCTCTGGACATCGACCT
CTTCCAGCTTCCGTCCCACACATCGCACATCACCCAGCCCTTGGACGTTG
GTACGTTCGGAACCTTCAAGAAGGAGCTCACAAGGGTGCTCACGGCCTAC
CCCCTGAAAATCGGGGGGAGGAGTCCAGTGCAGCGCGACATGGCTGGCGT
GNCAAGAACGGCGTCCCCGATGCGAAGTACACCGTCACGGAGTCATCCTT
CGTCCGGAGCCACGTGTTCCTCGACTACCTTCAAGACCTCCGCGAACAGC
TCGATGCACGCGGCTTGCAGGTTGCCCTTGTGCTCGACGACCACGCCTCG
CACACGACCTTCCACGCCATCAGCTTGGCCATCTCTCTGGACATCGACCT
CTTCCAGCTTCCGTCCCACACATCGCACATCACCCAGCCCTTGGACGTTG
GTACGTTCGGAACCTTCAAGAAGGAGCTCACAAGGGTGCTCACGGCCTAC
CCCCTGAAAATCGGGGGGAGGAGTCCAGTGCAGCGCGACATGGCTGGCGT
GATTGCGGAGGCATGGAGAGGGAGCTTCACGCCTGCGAATAACATGACGG
CGTTCAAAGGAGCGGGCTTGTGGCCGGTGAACATGGAGAAAGCCATCAAC
CGACTACACAGCAAGAGGAAGCAATGGGAGAATGACCGTCCTAGCCCTGA
AGACCTCGCCGTCGTTGCCTCCAAGAAGCAGCTCGAAGAAGATCTCGGCC
ACGCTGCCCTCCTGGAGCTGAAACGACAGGGAGTGATGATCGAGGGCCTC
CGCGTGAACACCGTGTTCCTCGGCGGGCTCACCCGCCTCACCAGGCGCTC
CAAGTCTTTCGCGACCGTTCGGGCGGGCGGGAGGAAGCCCGAGGGCGGTC
TCCTGTCCGCCGAAGAACACCTTGCTAAGGCAAAAACGGTACGCGGACGG
AGGTCGGGGGGCGCGGCTGTGGTGGGGGTCAGGAAGGGCGAGACGGGCGC
GGCCAGGGACAGGTTGGCCGGGGCCTCCCCGCTGGTGCTCGCGGAGAGGG
AAGAGGCGCTCGTGGGCGGGTGGGGCCCGGTGCTCGCGTCCAAGGAGGAG
TGGGACGGCCGAGAAGGGCGGTGGTTCCCTTGGTTCAGCCGCCGCCGCCG
GCGGCTCCTTTTTCCTCTCGAGGACGGCAACGAACTTCGACACCAATCGT
TGATGTGTAGACCAGATGCTGTACGGCTATCGATTTATTCGAGTGAAGGA
TGAATTATTCGAGTGAGACATACAGAAAACGTCAGTTAGTGTCGAGGTGC
CGATATGCATTTCGGGGTTGTGCTTCAACAGCTTTTGGGGGTAGTTTTCG
AGCGTCCCACGGGGGGGGGGGGGGATGGGGGGTGTAGCGGTGTTTTCCAG
CACCCCGGGGACGTGGAAATGCTGCCCCCGGGCCTGAAGGGCTATTGATT
TTTTTTGCTGCTTCGCGACTTGAGCTGATCGTCTTGAAAGGACCTTTCGA
TGGGGCCTTCGAGTTGTAAGAAACAGGTGCGATTTTCTACGAGAAGTCTC
ACGGCAGTGCCAAGCTGCTTTTTGCCTGGCCCAGTATACGTGCTGAATGT
ATGTAGTCTATGTTAAGAG

Coding sequence (CDS) from alignment at Scaffold_133:419053..421271-

>EsuBft1049_9a-0001 ID=EsuBft1049_9a-0001|Name=EsuBft1049_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1770bp|location=Sequence derived from alignment at Scaffold_133:419053..421271- (Ectocarpus subulatus male Bft15b)
ATGCACGCGCGTTCTCCGGTGTGCGTTGTAGGCTTCACCCCGCAAGGTAC
AAAGTCGGGGAAGGCTATCGTGCCAACAGGCACCAAGGTGCCCGGCGCCA
GGCGCTCCACCTCGCGAGAAAATACGACGGTGGTCGCCAGCATCGGCGCC
GACGGCCCCACCTACAACCCTATCATCATCTACAAAGGCCAGCGTATGCA
ACCCGTTNTGATTGTTCGACTGCCTCCACCCCCGATGCACGCGCGTTCTC
CGGTGTGCGTTGTAGGCTTCACCCCGCAAGGTACAAAGTCGGGGAAGGCT
ATCGTGCCAACAGGCACCAAGGTGCCCGGCGCCAGGCGCTCCACCTCGCG
AGAAAATACGACGGTGGTCGCCAGCATCGGCGCCGACGGCCCCACCTACA
ACCCTATCATCATCTACAAAGGCCAGCGTATGCAACCCGTTTGGATCCAG
GACAAGAACGGCGTCCCCGATGCGAAGTACACCGTCACGGAGTCATCCTT
CGTCCGGAGCCACGTGTTCCTCGACTACCTTCAAGACCTCCGCGAACAGC
TCGATGCACGCGGCTTGCAGGTTGCCCTTGTGCTCGACGACCACGCCTCG
CACACGACCTTCCACGCCATCAGCTTGGCCATCTCTCTGGACATCGACCT
CTTCCAGCTTCCGTCCCACACATCGCACATCACCCAGCCCTTGGACGTTG
CGCGACATGGCTGGCGTGNCAAGAACGGCGTCCCCGATGCGAAGTACACC
GTCACGGAGTCATCCTTCGTCCGGAGCCACGTGTTCCTCGACTACCTTCA
AGACCTCCGCGAACAGCTCGATGCACGCGGCTTGCAGGTTGCCCTTGTGC
TCGACGACCACGCCTCGCACACGACCTTCCACGCCATCAGCTTGGCCATC
TCTCTGGACATCGACCTCTTCCAGCTTCCGTCCCACACATCGCACATCAC
CCAGCCCTTGGACGTTGGTACGTTCGGAACCTTCAAGAAGGAGCTCACAA
GGGTGCTCACGGCCTACCCCCTGAAAATCGGGGGGAGGAGTCCAGTGCAG
CGCGACATGGCTGGCGTGATTGCGGAGGCATGGAGAGGGAGCTTCACGCC
TGCGAATAACATGACGGCGTTCAAAGGAGCGGGCTTGTGGCCGGTGAACA
TGGAGAAAGCCATCAACCGACTACACAGCAAGAGGAAGCAATGGGAGAAT
GACCGTCCTAGCCCTGAAGACCTCGCCGTCGTTGCCTCCAAGAAGCAGCT
CGAAGAAGATCTCGGCCACGCTGCCCTCCTGGAGCTGAAACGACAGGGAG
TGATGATCGAGGGCCTCCGCGTGAACACCGTGTTCCTCGGCGGGCTCACC
CGCCTCACCAGGCGCTCCAAGTCTTTCGCGACCGTTCGGGCGGGCGGGAG
GAAGCCCGAGGGCGGTCTCCTGTCCGCCGAAGAACACCTTGCTAAGGCAA
AAACGGTACGCGGACGGAGGTCGGGGGGCGCGGCTGTGGTGGGGGTCAGG
AAGGGCGAGACGGGCGCGGCCAGGGACAGGTTGGCCGGGGCCTCCCCGCT
GGTGCTCGCGGAGAGGGAAGAGGCGCTCGTGGGCGGGTGGGGCCCGGTGC
TCGCGTCCAAGGAGGAGTGGGACGGCCGAGAAGGGCGGTGGTTCCCTTGG
TTCAGCCGCCGCCGCCGGCGGCTCCTTTTTCCTCTCGAGGACGGCAACGA
ACTTCGACACCAATCGTTGATGTGTAGACCAGATGCTGTACGGCTATCGA
TTTATTCGAGTGAAGGATGA