EsuBft1048_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1048_5a-0001
Unique NameEsuBft1048_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_437contigScaffold_437:79615..81773 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7668.SPU_016560-tr
ProteomeIdEsuBft1048_5
Protein domainsIPR027806
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl33154|Opisthokonta
Length75
Hectar predicted targeting categorymitochondrion
Evalue1.5e-14
EggNOG OGs2AWDH@1|root,2RZYI@2759|Eukaryota,3A38W@33154|Opisthokonta,3BS4I@33208|Metazoa,3D9UV@33213|Bilateria
Date last modified2016-06-13
Date creation2016-06-13
DescriptionDDE superfamily endonuclease
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1048_5aEsuBft1048_5aEctocarpus subulatus male Bft15bgeneScaffold_437 79615..81773 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1048_5a-0001-exonagat-exon-33467Ectocarpus subulatus male Bft15bexonScaffold_437 79615..79794 -
EsuBft1048_5a-0001-exonagat-exon-33468Ectocarpus subulatus male Bft15bexonScaffold_437 80211..80311 -
EsuBft1048_5a-0001-exonEsuBft1048_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_437 80702..80706 -
EsuBft1048_5a-0001-exonagat-exon-33466Ectocarpus subulatus male Bft15bexonScaffold_437 81301..81773 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1048_5a-0001-cdsEsuBft1048_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_437 79615..79794 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1048_5a-0001EsuBft1048_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_437 79615..81773 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1048_5a-0001 ID=EsuBft1048_5a-0001|Name=EsuBft1048_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=759bp|location=Sequence derived from alignment at Scaffold_437:79615..81773- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGACTCCGTCGGGGTACCGGAAGACCGTGAGGCAGACGCTGCTCTT
AACCAGAGGGCTGGTGCGATGCACGCGGCGGACATGGTGGAGCTCAGATA
CTGGGACACAAGTCCTCTTCAGCGAAGCTGTGAAGCACCCGGAGATGCTC
CTCGAGTACGGAGAGGAGGGGGCTGCGGACGGAGAGAGCGAGGCAGAGAA
TGAGGCCCGCTTCATCGACTTCGAGATGCTCTATGCGATGATGGAGAGAG
AAGAGCTACTCCGCCCTCGTCAAGTCCACCGCGCGCCGGTGGATCACGTG
ACGAGAATCATCGACAGTGTTGATGATTGCGACGCGTATCACAACTACCG
GACCCTCAAGAAGGACATGCCCCGGCTGATGGAAGCGTTCGGCTTCCCTA
ATTTGATTGGGCTGGAGAACGGGTGTGTGTTTCGCGGGGAGGAGGCCTTC
CTTCTTCTGCTGATGAGGATGAGCAAAGGACGGCCTTTGGGGCTGACGTA
CGACGACATCTGCGCCTTCATCGATGGGACTCTCCGTCGCTTCTGCAGAC
CCGACGGGCACGACGACATCCAGAGGGAGGTGTACGATGGGCATCATCGC
GATCACGGGCTGGTGTACCAGGCGGTGCAGGCTCCGAGCGCGATGATCAT
CGATGCTTGGGGTCCCGTGTCTGGGCGGCGACACGACTTGTACCTCCTCC
GCGTCAGCGAGCTAAGCCCTCGCCTGGCGGCCGTGCAGGACCCGGACGGA
CGCAGATGA
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protein sequence of EsuBft1048_5a-0001

>EsuBft1048_5 ID=EsuBft1048_5|Name=EsuBft1048_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=252bp
MVTPSGYRKTVRQTLLLTRGLVRCTRRTWWSSDTGTQVLFSEAVKHPEML
LEYGEEGAADGESEAENEARFIDFEMLYAMMEREELLRPRQVHRAPVDHV
TRIIDSVDDCDAYHNYRTLKKDMPRLMEAFGFPNLIGLENGCVFRGEEAF
LLLLMRMSKGRPLGLTYDDICAFIDGTLRRFCRPDGHDDIQREVYDGHHR
DHGLVYQAVQAPSAMIIDAWGPVSGRRHDLYLLRVSELSPRLAAVQDPDG
RR
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mRNA from alignment at Scaffold_437:79615..81773-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1048_5a-0001 ID=EsuBft1048_5a-0001|Name=EsuBft1048_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2159bp|location=Sequence derived from alignment at Scaffold_437:79615..81773- (Ectocarpus subulatus male Bft15b)
ATGGTGACTCCGTCGGGGTACCGGAAGACCGTGAGGCAGACGCTGCTCTT
AACCAGAGGGCTGGTGCGATGCACGCGGCGGACATGGTGGAGCTCAGATA
CTGGGACACAAGTCCTCTTCAGCGAAGCTGTGAAGCACCCGGAGATGCTC
CTCGAGTACGGAGAGGAGGGGGCTGCGGACGGAGAGAGCGAGGCAGAGAA
TGAGGCCCGCTTCATCGACTTCGAGATGCTCTATGCGATGATGGAGAGAG
AAGAGCTACTCCGCCCTCGTCAAGTCCACCGCGCGCCGGTGGATCACGTG
ACGAGAATCATCGACAGTGTTGATGATTGCGACGCGTATCACAACTACCG
GACCCTCAAGAAGGACATGCCCCGGCTGATGGAAGCGTTCGGCTTCCCTA
ATTTGATTGGGCTGGAGAACGGGTGTGTGTTTCGCGGGGAGGAGGCCTTC
CTTCTTCTGCTGATGAGGATGAGGTGAGTTATTTTTATTTTCTCGGAGCT
GCTACGAGGTGTATGTAGCCGCAGCAGCAGCAGCAGCAGCAGCAGCAAGC
TGGTGCAGCCCAGCTTGGGGGTTGCAAGGGTGTACAGATGAAGCGCCATG
ACAGGCTCCCTTGGCAACACAACAGACGGCATGTACTCGTACGTGGGCAG
AGAAAACATCTGGACACGCCGCTCGTGAAGAGGGTGTTTCCGAAGTCTAG
AATAGATATTGTAGGTGCTGTACCAGAGTTGGCATCCGTGGAGCGTTCAT
GTTCCCCCATCCACCGCTTCCGCGAACTTGTAGCAGCCGAGTGCATGGTT
CGGTGTTTCGTCTCCACTTGCCAACACCTGCAGGCTTCTTTGCTCTGTGG
TCTGCGCGTCGTAGTGCACGCCTGCTTTCGGCCGGTTCTGCGAAATACCC
GTGATCGCAGGTACCCCGGACGCTTGTCTGATTTGGAGAGATATTTCGGC
CGAGAGTATTCGTAGCTATGTTGGCTGTTTCGGTGGGCGACCGAGTTCGT
CTTCACGCGCCACAGTTTGAAGAGTCATGGATCCGCACCTCCGACCCTTC
GCCCAAGCGGTGTACAGCAAAGGTGCGGGCAGCTGTTGTACAGCAGCGCA
GCAGCATCATAGATCACACGGGTTTGGTGTGCGACAGCATGCAGTCCCTG
CGCCGCAGGCGGTCCAGCAGGAGGGAATATCGAGGCCGGAGCTTTGCACC
ACAGCCTCTAGCCGCCATTCCCGCGCGCCTCGAAACGCAAAGCGTGTCTT
TGGCGGAGGGAGGAATTAGTTCTGGCGACAAAATTTTCCATCATAGGTAC
ACTCGAAGAGAGAGGCGGGCGTTAGGTTTCATCATGAGGCGAGGTCGTGA
TCAAAAGGAACAACGGACGCACACAAATGGTGTCCTCCCCAGCGAAGAGC
CCGATGTAAAATATATGCTTCTTGGTCTTGTGCATTTGTTTTTGCTCATC
GCCTTCGCGCAGGACGGCCTTTGGGGCTGACGTACGACGACATCTGCGCC
TTCATCGATGGGACTCTCCGTCGCTTCTGCAGACCCGACGGGCACGACGA
CATCCAGAGGGAGGTTAGCAATACATTTGCTTTCTTTGTTGGTCGTGGTG
ACGATGGAGGACGACGGAATAGCCTTGCGATAGTCCAGTTAGGCGACTTA
AAGTGGGCCGTCGCCTCCTTCCGATTGTTTCTCGGCATTGTTGTGGTGTA
TTTGTGAGTTTTTGGTGTCCATGCACTGCGGTGATGGGCGATTGTGGTCA
GGCGGACAAGCGTGTTTTACGGGAGTCACCTTGCTGCCCAGCCCTCCTCG
CCCTGCCACTTTTGGCCGGCAGGTCGCCGTTACGTCCGAAACAAGTGTCG
GTTTAGGTGCGTGTCGACGTTAGTCTCTGCACAACAGTAGTACTTGCACT
AAGCTCATAACCCTGTGCTGCGTGGCTCACGACCCCCCACCACATCCCCC
CGCTGGCATGCACCTTACATTCGACGTAGGTGTACGATGGGCATCATCGC
GATCACGGGCTGGTGTACCAGGCGGTGCAGGCTCCGAGCGCGATGATCAT
CGATGCTTGGGGTCCCGTGTCTGGGCGGCGACACGACTTGTACCTCCTCC
GCGTCAGCGAGCTAAGCCCTCGCCTGGCGGCCGTGCAGGACCCGGACGGA
CGCAGATGA
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Coding sequence (CDS) from alignment at Scaffold_437:79615..81773-

>EsuBft1048_5a-0001 ID=EsuBft1048_5a-0001|Name=EsuBft1048_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=759bp|location=Sequence derived from alignment at Scaffold_437:79615..81773- (Ectocarpus subulatus male Bft15b)
ATGGTGACTCCGTCGGGGTACCGGAAGACCGTGAGGCAGACGCTGCTCTT
AACCAGAGGGCTGGTGCGATGCACGCGGCGGACATGGTGGAGCTCAGATA
CTGGGACACAAGTCCTCTTCAGCGAAGCTGTGAAGCACCCGGAGATGCTC
CTCGAGTACGGAGAGGAGGGGGCTGCGGACGGAGAGAGCGAGGCAGAGAA
TGAGGCCCGCTTCATCGACTTCGAGATGCTCTATGCGATGATGGAGAGAG
AAGAGCTACTCCGCCCTCGTCAAGTCCACCGCGCGCCGGTGGATCACGTG
ACGAGAATCATCGACAGTGTTGATGATTGCGACGCGTATCACAACTACCG
GACCCTCAAGAAGGACATGCCCCGGCTGATGGAAGCGTTCGGCTTCCCTA
ATTTGATTGGGCTGGAGAACGGGTGTGTGTTTCGCGGGGAGGAGGCCTTC
CTTCTTCTGCTGATGAGGATGAGCAAAGGACGGCCTTTGGGGCTGACGTA
CGACGACATCTGCGCCTTCATCGATGGGACTCTCCGTCGCTTCTGCAGAC
CCGACGGGCACGACGACATCCAGAGGGAGGTGTACGATGGGCATCATCGC
GATCACGGGCTGGTGTACCAGGCGGTGCAGGCTCCGAGCGCGATGATCAT
CGATGCTTGGGGTCCCGTGTCTGGGCGGCGACACGACTTGTACCTCCTCC
GCGTCAGCGAGCTAAGCCCTCGCCTGGCGGCCGTGCAGGACCCGGACGGA
CGCAGATGA
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