Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft1047_3 |
| Protein domains | Coil |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 4 |
| Length | 140 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1047_3a-0001 ID=EsuBft1047_3a-0001|Name=EsuBft1047_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1407bp|location=Sequence derived from alignment at Scaffold_512:477540..480193- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCTCAGCGAATATCGCGCGGACGCCAACAAGCGGAGCCTCACCGAGGA
ATACCTGCCGCCCAGCGACTCATCATTGGCAGGGTTGGAGTGCGACCTCG
GCACGTACGACCTGACCAAGACGCGCCGTACGGGAACGAGTTCGGGAGCG
GCATCACCTCCGGAACCTGCGCGTACAGCGCTCCATCGAAGCCCCACGCC
CCGGACCCTCTTCACGCCCGCGGCGCTCAAGGCCATGAAACAGGAGGTGC
CGGTCCTCCACAAGCCCTCCTACGACGCAGGCCTCGATCTTCGTCTCAAG
AAGGCACAGGACCACGATATCGACATGCGCGCTGCTTGGGACGCCGCCGA
CCGGAAGCTGCACGAGGCCGAAAAGCGGGCGGTCATCCCCGCCTCCGACC
TTCTCCATGGTACTTCTCGCGGCCTGAAGCTGCAAGATCTCTACAAAGAG
CAGCAGACGAACGCCGCCGAGAAGGCCAAGGTCGTGGAAGAGGCGGGTGC
AACCACTCTCGACCTCCAGCGGAAGCTGGCCGAGTCCCGTGCGCACGCGG
ACGCCGCAGAGGCCAAGAAGGACGCCCTTCTCCGCCGCCTCTCGCACGAA
TCGTCCCTCGACTGCCCCCCGCACGACGACGTCGAGCTGACCAAACTCCT
GGATGAGCTTGAGACGTGCCTCAAGAAGGTCAACGGGCTTCGGGCGCAGT
GGCACAGATACCTTCGCGTGCTCGAGTGGCACTACACCGGCGACCTCGAC
TACGTGAGCTCGTCCCTCCAGAGCTTGGCATCCTCGGACGGTCTCTTGCC
GCCCCACGTCCTGGCTGTGCTGTCTGCGGAAGACGCCAAGTGCGCCCAGG
ACACGGGCAGGGCCCGGGCGGCAGAGCTGCACCTCTCTGCGGAGGACAGG
TACCGGGGAATAGTGGACGAGGTAGGCACTCTGACTCCGTGCCTCGGCAC
CAGACCATCGATCGAAGCGCGCGAACTGGGTCTGGCCGAGGAAAAACTGG
TGAGGGTATCGGCGATGGTGTCGGCGTTCAACCTGTTCCGCACTGCAGAG
ACGTACAAGAAGATGGATGCGCAGCGAGCCTGTAACGAGGACAACCAGGC
CATGTCCGACGTTTCGCAGTGCGAGGAGCTCCTTGCGGAAGCGGAGGTGC
ACGAGCAGGGGGCTCTGGCTGACCAGAAGGAGGCCGAGCAGGCCGCGTCC
GAGACGCTGCAGGACACCGAGAAGGTCGGGGCCGAGATGAGCGACGTCGA
GAAGCGGTTTGTCGACACTGCCGACGACGACAAGGCCATCAAGGAACTCG
TGGCCGAGCCCCGAGAAGCCTGGGACGAGGCCATGTTGACGGTGGCTCGC
ACCAAGCAACACTTCAATGACTCAACAGTGTTGCGGACAGGATGCGTGTG
GCCGTGA back to topprotein sequence of EsuBft1047_3a-0001 >EsuBft1047_3 ID=EsuBft1047_3|Name=EsuBft1047_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=468bp
MLSEYRADANKRSLTEEYLPPSDSSLAGLECDLGTYDLTKTRRTGTSSGA
ASPPEPARTALHRSPTPRTLFTPAALKAMKQEVPVLHKPSYDAGLDLRLK
KAQDHDIDMRAAWDAADRKLHEAEKRAVIPASDLLHGTSRGLKLQDLYKE
QQTNAAEKAKVVEEAGATTLDLQRKLAESRAHADAAEAKKDALLRRLSHE
SSLDCPPHDDVELTKLLDELETCLKKVNGLRAQWHRYLRVLEWHYTGDLD
YVSSSLQSLASSDGLLPPHVLAVLSAEDAKCAQDTGRARAAELHLSAEDR
YRGIVDEVGTLTPCLGTRPSIEARELGLAEEKLVRVSAMVSAFNLFRTAE
TYKKMDAQRACNEDNQAMSDVSQCEELLAEAEVHEQGALADQKEAEQAAS
ETLQDTEKVGAEMSDVEKRFVDTADDDKAIKELVAEPREAWDEAMLTVAR
TKQHFNDSTVLRTGCVWP back to topmRNA from alignment at Scaffold_512:477540..480193- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1047_3a-0001 ID=EsuBft1047_3a-0001|Name=EsuBft1047_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2654bp|location=Sequence derived from alignment at Scaffold_512:477540..480193- (Ectocarpus subulatus male Bft15b)
ATGCTCAGCGAATATCGCGCGGACGCCAACAAGCGGAGCCTCACCGAGGA
ATACCTGCCGCCCAGCGACTCATCATTGGCAGGGTTGGAGTGCGACCTCG
GCACGTACGACCTGACCAAGACGCGCCGTACGGTGAGAGTTTCTTGACAC
CCCACTACAAGTAGTTGGCCGTGTGTATTGCTGGTGTGTAGCCACAGGCG
CTCGGTGTTAAACTTGATTGACCACACCTGCTCATGTCAAATTTTGGTTC
CGGTTGGCGCACCGGATCGCAGAAAAAGCACAGCAAGCGAGATAACCTTT
TCCCCGTTATTTGGGGTTGAGAGCGGTGTGCGAAGGGTGTCAAACCCTCA
GGTCTTACGGCGCAGGGCTATACGGCGTGGCGCGATCTTCGGAATGTTGC
GATCTCACCTTCCGTGCCTCCTCACTTCGCCAAAATCATTCCATGTTCTC
GCCTTTGCCGGTAAAACATCTTTTGATTCGGTCTTGTGTAGATCCGTTTT
CTCTGCGTCGGTTATCGATGTAAACGGGCAATCTGTCGTGGTGGATCTTC
CATAAGCTGCTGCTGTTGGCGTCGTCCGTGCGCCCCACGTTCCCATCTTG
TAGGGTTCATCATGCCTTCACATCCGCCGGCAAGCAATCGTACCTAACCA
CAAACATACTGATGTTGTATGCGCGCAAATCCGTTAGTTCGTGCGCATAC
AAGAACACAGGGAACGTACGCATTGCACCCTGTGATCCGTTCATTTTATT
GTTTCGTATGCTGCTGCTGTGGACCTTTGGTGCAGCCGCTGAGTGTACCT
TTGAACCGCCCGTCGTATTTAGCTATTGAGAGAATATTCAACGCAAAAGC
AACAACGTGTGTGGACGTCGGGACGGAGGAACGGAGAGCGTGCGTTGTTG
TTGCCTCTGTCTGAGGCACAGCAGTACTTCATTCTGCAGCGAACACGAAT
GCACCGGCGTCATTCTGCCTGCACGCACACGTCATCTGCAAGATGGAGCA
CCTACATACGTAAAGCAGCAGCTTGTATCACTCACAGCGCGCAAACACCC
GCTCCCTGTTTTCCGCCGCTCCCAACACTGCTGCCGTTCTTGATTCAGGA
GTTCGGGAGCGGCATCACCTCCGGAACCTGCGCGTACAGCGCTCCATCGA
AGCCCCACGCCCCGGACCCTCTTCACGCCCGCGGCGCTCAAGGCCATGAA
ACAGGAGGTGCCGGTCCTCCACAAGCCCTCCTACGACGCAGGCCTCGATC
TTCGTCTCAAGAAGGCACAGGACCACGATATCGACATGCGCGCTGCTTGG
GACGCCGCCGACCGGAAGCTGCACGAGGCCGAAAAGCGGGCGGTCATCCC
CGCCTCCGACCTTCTCCATGGTACTTCTCGCGGCCTGAAGCTGCAAGATC
TCTACAAAGAGCAGCAGACGAACGCCGCCGAGAAGGCCAAGGTCGTGGAA
GAGGCGGGTGCAACCACTCTCGACCTCCAGCGGAAGCTGGCCGAGTCCCG
TGCGCACGCGGACGCCGCAGAGGCCAAGAAGGACGCCCTTCTCCGCCGCC
TCTCGCACGAATCGTCCCTCGACTGCCCCCCGCACGACGACGTCGAGCTG
ACCAAACTCCTGGATGAGCTTGAGACGTGCCTCAAGAAGGTCAACGGGCT
TCGGGCGCAGTGGCACAGATACCTTCGCGTGCTCGAGTGGCACTACACCG
GCGACCTCGACTACGTGAGCTCGTCCCTCCAGAGCTTGGCATCCTCGGAC
GGTCTCTTGCCGCCCCACGTCCTGGCTGTGCTGTCTGCGGAAGACGCCAA
GTGCGCCCAGGACACGGGCAGGGCCCGGGCGGCAGAGCTGCACCTCTCTG
CGGAGGACAGGTACCGGGGAATAGTGGACGAGGTAGGCACTCTGACTCCG
TGCCTCGGCACCAGACCATCGATCGAAGCGCGCGAACTGGGTCTGGCCGA
GGAAAAACTGGTGAGGGTATCGGCGATGGTGTCGGCGTTCAACCTGTTCC
GCACTGCAGAGACGTACAAGAAGATGGATGCGCAGCGAGCCTGTAACGAG
GACAACCAGGCCATGTCCGACGTTTCGCAGTGCGAGGAGCTCCTTGCGGA
AGCGGAGGTGCACGAGCAGGGGGCTCTGGTGAGTGTCATGGGTTTCTTGC
TTGTCTGTGCGCGCCAGCAGTACTGACTAACATTCGTGCGCACCTTGTTT
ACGAAGGAGTACAATGAACGTCGTCGCATTCCCTTTTGCCGTGCCCCGTC
CAAACCAACAAGGAAATGCTGTAAATAGTCCGTTGTTCCACACGAGCAAG
GGCAACAAACCCAAATGATTTGCAACTGGTGCCTGCGCAAATTGTAAAGT
ACCCGCGCCTGTCTCCGCCTTGCATGTTGGCGTTTCGTCCCTCTTCTCCT
TCACTTCACTTCAGGCTGACCAGAAGGAGGCCGAGCAGGCCGCGTCCGAG
ACGCTGCAGGACACCGAGAAGGTCGGGGCCGAGATGAGCGACGTCGAGAA
GCGGTTTGTCGACACTGCCGACGACGACAAGGCCATCAAGGAACTCGTGG
CCGAGCCCCGAGAAGCCTGGGACGAGGCCATGTTGACGGTGGCTCGCACC
AAGCAACACTTCAATGACTCAACAGTGTTGCGGACAGGATGCGTGTGGCC
GTGA back to topCoding sequence (CDS) from alignment at Scaffold_512:477540..480193- >EsuBft1047_3a-0001 ID=EsuBft1047_3a-0001|Name=EsuBft1047_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1407bp|location=Sequence derived from alignment at Scaffold_512:477540..480193- (Ectocarpus subulatus male Bft15b)
ATGCTCAGCGAATATCGCGCGGACGCCAACAAGCGGAGCCTCACCGAGGA
ATACCTGCCGCCCAGCGACTCATCATTGGCAGGGTTGGAGTGCGACCTCG
GCACGTACGACCTGACCAAGACGCGCCGTACGGGAACGAGTTCGGGAGCG
GCATCACCTCCGGAACCTGCGCGTACAGCGCTCCATCGAAGCCCCACGCC
CCGGACCCTCTTCACGCCCGCGGCGCTCAAGGCCATGAAACAGGAGGTGC
CGGTCCTCCACAAGCCCTCCTACGACGCAGGCCTCGATCTTCGTCTCAAG
AAGGCACAGGACCACGATATCGACATGCGCGCTGCTTGGGACGCCGCCGA
CCGGAAGCTGCACGAGGCCGAAAAGCGGGCGGTCATCCCCGCCTCCGACC
TTCTCCATGGTACTTCTCGCGGCCTGAAGCTGCAAGATCTCTACAAAGAG
CAGCAGACGAACGCCGCCGAGAAGGCCAAGGTCGTGGAAGAGGCGGGTGC
AACCACTCTCGACCTCCAGCGGAAGCTGGCCGAGTCCCGTGCGCACGCGG
ACGCCGCAGAGGCCAAGAAGGACGCCCTTCTCCGCCGCCTCTCGCACGAA
TCGTCCCTCGACTGCCCCCCGCACGACGACGTCGAGCTGACCAAACTCCT
GGATGAGCTTGAGACGTGCCTCAAGAAGGTCAACGGGCTTCGGGCGCAGT
GGCACAGATACCTTCGCGTGCTCGAGTGGCACTACACCGGCGACCTCGAC
TACGTGAGCTCGTCCCTCCAGAGCTTGGCATCCTCGGACGGTCTCTTGCC
GCCCCACGTCCTGGCTGTGCTGTCTGCGGAAGACGCCAAGTGCGCCCAGG
ACACGGGCAGGGCCCGGGCGGCAGAGCTGCACCTCTCTGCGGAGGACAGG
TACCGGGGAATAGTGGACGAGGTAGGCACTCTGACTCCGTGCCTCGGCAC
CAGACCATCGATCGAAGCGCGCGAACTGGGTCTGGCCGAGGAAAAACTGG
TGAGGGTATCGGCGATGGTGTCGGCGTTCAACCTGTTCCGCACTGCAGAG
ACGTACAAGAAGATGGATGCGCAGCGAGCCTGTAACGAGGACAACCAGGC
CATGTCCGACGTTTCGCAGTGCGAGGAGCTCCTTGCGGAAGCGGAGGTGC
ACGAGCAGGGGGCTCTGGCTGACCAGAAGGAGGCCGAGCAGGCCGCGTCC
GAGACGCTGCAGGACACCGAGAAGGTCGGGGCCGAGATGAGCGACGTCGA
GAAGCGGTTTGTCGACACTGCCGACGACGACAAGGCCATCAAGGAACTCG
TGGCCGAGCCCCGAGAAGCCTGGGACGAGGCCATGTTGACGGTGGCTCGC
ACCAAGCAACACTTCAATGACTCAACAGTGTTGCGGACAGGATGCGTGTG
GCCGTGA back to top
|