EsuBft1044_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1044_3a-0001
Unique NameEsuBft1044_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:1188251..1189211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1044_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length58
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1044_3aEsuBft1044_3aEctocarpus subulatus male Bft15bgeneScaffold_499 1188251..1189211 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1044_3a-0001EsuBft1044_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 1189002..1189157 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1044_3a-0001-exonEsuBft1044_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 1188251..1188367 -
EsuBft1044_3a-0001-exonagat-exon-23588Ectocarpus subulatus male Bft15bexonScaffold_499 1188439..1188569 -
EsuBft1044_3a-0001-exonagat-exon-23587Ectocarpus subulatus male Bft15bexonScaffold_499 1188880..1189211 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1044_3a-0001-exonagat-three_prime_utr-437Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_499 1188251..1188367 -
EsuBft1044_3a-0001-exonagat-three_prime_utr-438Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_499 1188439..1188569 -
EsuBft1044_3a-0001-exonagat-three_prime_utr-439Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_499 1188880..1189001 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1044_3a-0001-cdsEsuBft1044_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 1189002..1189157 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1044_3a-0001-exonagat-five_prime_utr-270Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_499 1189158..1189211 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1044_3a-0001 ID=EsuBft1044_3a-0001|Name=EsuBft1044_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=580bp|location=Sequence derived from alignment at Scaffold_499:1188251..1189211- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCTTGGTTTAATGTACCCCCGAAGAACAGCTGCTGAAGGGAGGCTGGACG
AACCATGACCAAAACGTCAGGGCGTGAAGGGAGACCGGCCATGTACCTAG
CTAGGTCGATGAGTCGCTCACAACGTTTCCCGAAGCTCGCACTTGAAGGG
AGGCCGGCCACAATACCCCGTCCGATGGTCAAATCGACGCCCCAAATCCA
GTTCTCGTAGGGAGGCTGGTCACACCACATCGGCAACCGGCTGGTTGAAG
AACAGCCCGAAATCCAGCACTCGAAGCGACGGCGGCCACGCAACCCCGGA
GACAGGTTGGTTGAAGCCTCTGTTGTTCGGCGGGAGGGTGGCTACACGAC
GGCGGCAATAGGTTGGTTGAAACAAAACCCAAACGTCAGGTTCAGGAGAG
ACCCCAGCCAGACGACGTCCGCTATGGGCTGATTGAAACGGTCTCCGACA
CATAGCTTTTGAAGCTGGCCACTCCACTTGGGCGATGGGCTGATTGAAAT
CGCCCCCCAAAGTCAGACTCTTCAAGTATGTCGGCCACGCAAGTCCGGTG
AGGTCTTGATTGAACGTGCCCTTCAAAGTC
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protein sequence of EsuBft1044_3a-0001

>EsuBft1044_3 ID=EsuBft1044_3|Name=EsuBft1044_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=51bp
MTKTSGREGRPAMYLARSMSRSQRFPKLALEGRPATIPRPMVKSTPQIQF
S
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mRNA from alignment at Scaffold_499:1188251..1189211-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1044_3a-0001 ID=EsuBft1044_3a-0001|Name=EsuBft1044_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=961bp|location=Sequence derived from alignment at Scaffold_499:1188251..1189211- (Ectocarpus subulatus male Bft15b)
TCTTGGTTTAATGTACCCCCGAAGAACAGCTGCTGAAGGGAGGCTGGACG
AACCATGACCAAAACGTCAGGGCGTGAAGGGAGACCGGCCATGTACCTAG
CTAGGTCGATGAGTCGCTCACAACGTTTCCCGAAGCTCGCACTTGAAGGG
AGGCCGGCCACAATACCCCGTCCGATGGTCAAATCGACGCCCCAAATCCA
GTTCTCGTAGGGAGGCTGGTCACACCACATCGGCAACCGGCTGGTTGAAG
AACAGCCCGAAATCCAGCACTCGAAGCGACGGCGGCCACGCAACCCCGGA
GACAGGTTGGTTGAAGCCTCTGTTGTTCGGCGGTATCGGATGCCTCGCTG
CAAACATCAGCCTTTCCAGGGAAGCCGGCCACGTGACCTCGTCAACGGGC
TGGTCGAAACTTGCTCCGAGAAACACTGCCTGAAGTGAATCAGGCCATTC
GACGCCAACGAGCAGCTGATCGAAATTGAATCCAAGCTCGAGTTGTTCGA
GGGATTCCGGAAATGCCACCCCGGCAATGGGATGGTCAAAGTCGTCCGGA
AAACAATTTTTTTTCAACGAGCTGGGCCAGAGCGCGTCGACGATGGGCTG
GTCAAAGTCACCCGCCAGCTGCCCGAGCTCTAGAGAGTGCAGGGAGGGTG
GCTACACGACGGCGGCAATAGGTTGGTTGAAACAAAACCCAAACGTCAGG
TTCAGGAGAGACCCCAGCCAGACGACGTCCGCTATGGGCTGATTGAAACG
GTCTCCGACACATAGCTTTTGAAGTGAGGCTGGCCACTCCACTTGGGCGA
TGGGCTGATCGAAACGGCCTCCGAAACATAGCATTTGAAGGGAGGCTGGC
CACTCCACTTGGGCGATGGGCTGATTGAAATCGCCCCCCAAAGTCAGACT
CTTCAAGTATGTCGGCCACGCAAGTCCGGTGAGGTCTTGATTGAACGTGC
CCTTCAAAGTC
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Coding sequence (CDS) from alignment at Scaffold_499:1188251..1189211-

>EsuBft1044_3a-0001 ID=EsuBft1044_3a-0001|Name=EsuBft1044_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=156bp|location=Sequence derived from alignment at Scaffold_499:1188251..1189211- (Ectocarpus subulatus male Bft15b)
ATGACCAAAACGTCAGGGCGTGAAGGGAGACCGGCCATGTACCTAGCTAG
GTCGATGAGTCGCTCACAACGTTTCCCGAAGCTCGCACTTGAAGGGAGGC
CGGCCACAATACCCCGTCCGATGGTCAAATCGACGCCCCAAATCCAGTTC
TCGTAG
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