Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 55529.EKX41349 |
| ProteomeId | EsuBft1043_3 |
| Protein domains | IPR001440 |
| Protein domains | IPR011990 |
| Protein domains | IPR019734 |
| Protein domains | SSF48452 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 187 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.12e-13 |
| EggNOG OGs | 28ZWJ@1|root,2R6RA@2759|Eukaryota |
| Ec32 ortholog description | Tetratricopeptide-like helical domain |
| Ec32 ortholog | Ec-20_004460.1 |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | Tetratricopeptide repeat |
| COG category | S |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0031227 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1043_3a-0001 ID=EsuBft1043_3a-0001|Name=EsuBft1043_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1872bp|location=Sequence derived from alignment at Scaffold_11:554317..556734- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGAGGCACACAACAGTTCAGAAGGCAGCTTAAGTGAGACTTCAGAGGT
GGTTCACTCGCGCATCTTGAGTCTGAGAAAGGGTGGCAACGACCACGGCG
CCGTCGTTGCAGCGGAAGAGAGCCTAAACCGGTCGGTCGACTCTCACGGT
CCCTCGTCAGCGGAGACCCGCAAAGTCGCAGCAGACCTTGTCTTAGCCTA
CAACCACCTCGCCATGAAAAGACTGTCGGAGAACAACATCAAGGAAATCC
TCCAGCCCCCGGGTGGTTCGGCAAAGTCCAACCGCATTCCCCTTCCACCA
AACATTCACAAATCAATGATTCAGGCCTCAGGTCGCCTTCTGCAGAAAGC
CTCACTGCTGACCAGCCGGGGGCAGCCTTTTCTTGGCAAGGCAAGGCTTC
AGGCTCGCGCGTTGACGCTCAACAACCTCGGCTGCCTGATGAAGAAGTGG
GGAAAGCCACGCGAAAGCGTCAAGTTTCTCGCCCGCGCTCTTAGAATAGA
AGCCAAGGTGCCCGGGGGCGCGGACAACCCCGCCGGCACGCATGTGAACA
TGAGCGCCGCTTTGTCGACCATTGGGCTGCACCGGGAAGCCGCTACGCAC
GCCGGTCACGCCATTGAACTCGCATCCCAAGCGATGATGGAGCAAAAAGC
AGCGTTCTCCTACGTCACAGGCCCAAATACCGCGAGTGGTGACCTAGCGG
GCATGGAGGAGGACGGTGCTGCTGCATCGGTTGATCTTACTGCTGACGAC
AGTGGGAGAAAGGGTGGTGTCGGGTGTAGCGATACTAGCGTTCCAAGTGT
AGGGGTCACAGGACGTCTGGAAAGCAGCAGCGTTCCTCGGCCGGAAGTCC
ACGGGGAAGACGGGGAGACAGTTTGTTCTTCGGCCGTGGCGGATGATGGG
CGTACATGTAGTCCTGAAGCATCCTCGTCAGTCCACGACGCGGACCATGA
CGTGCCAGAAGGTGGAACAACAGCGAACCCCGCCGAAAACGGTACGGGAG
GCCAAGGAGGAGGAGGAGGAGGAGGAGGAGAGTCTACAGGGGCCGAAAAG
AGCGTTCAAGGAGACGCGAGCTCGGTCGACAGGCAAGACCGACACCAATC
GGCGGCGGGAGGGCTCCTCGCCATCGCCTGTTTCAACCTTGGGGTCGAGA
GGGAGCACCTTGGTCAGCTGGACGCGGCAATCGCCTCGTACAAGGACGCG
CGCTCGGCGGCCGACCAGCACCTTGGGCCGGAGAGTCCCGTCGCGAAGGG
GATTGAAATCGCGCTCGAGAAAGCCTCCGCCGCCGCCTCCGCCGCCGCCT
CCTACTCCCGTAAGCGCGCGGCTTCACGCTCCCGAGTAGCGGTGGCGTCC
TTCCCTTGCATAGGCAAGCTCAAGTTCGGCCACAAAAACTCGCAAGTGCC
GTCACGCTTCGGCGGCGTGGGCCTTTCTCCGCGATGCCGGTCACAGCAGC
AGCACGGCGAGGAAATCGTTGGCGAAGCAACGGCAAGGGACCTCCTCGAA
CTCGCGTACACCAGCCCTCGTCCGTGCCCTGCCCCACCTCACAAAGACTC
ATGGGCACGCCTCGGCCGCGTACCGACCCCTCGATTGGCCCCTCCAGGAC
GGTCGGCATCGCGTGGCCCTCAGCGGGCGGGGAGATGGACGAGCGTCGAC
ACCCCGGCGGCGCGGGCTATGAAGGAAGCGCAGCGGCGGTCGGAAGGGTG
GAGGAACGGCGGCAGGCAGCGTGACGACGTCGACGGGAATTTGAGGTGGC
GGGCCTTAGCTTGTGCTGAGTGGCAGTGCAGTCCGAGGGAGGCACTGCAC
GCCCAGCGGCAGGTTGCGGAGCAACACGGGGTGGATGTTGGGATGGCTGC
GCCAACAAGCGATGCTACATAG back to topprotein sequence of EsuBft1043_3a-0001 >EsuBft1043_3 ID=EsuBft1043_3|Name=EsuBft1043_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=623bp
MEAHNSSEGSLSETSEVVHSRILSLRKGGNDHGAVVAAEESLNRSVDSHG
PSSAETRKVAADLVLAYNHLAMKRLSENNIKEILQPPGGSAKSNRIPLPP
NIHKSMIQASGRLLQKASLLTSRGQPFLGKARLQARALTLNNLGCLMKKW
GKPRESVKFLARALRIEAKVPGGADNPAGTHVNMSAALSTIGLHREAATH
AGHAIELASQAMMEQKAAFSYVTGPNTASGDLAGMEEDGAAASVDLTADD
SGRKGGVGCSDTSVPSVGVTGRLESSSVPRPEVHGEDGETVCSSAVADDG
RTCSPEASSSVHDADHDVPEGGTTANPAENGTGGQGGGGGGGGESTGAEK
SVQGDASSVDRQDRHQSAAGGLLAIACFNLGVEREHLGQLDAAIASYKDA
RSAADQHLGPESPVAKGIEIALEKASAAASAAASYSRKRAASRSRVAVAS
FPCIGKLKFGHKNSQVPSRFGGVGLSPRCRSQQQHGEEIVGEATARDLLE
LAYTSPRPCPAPPHKDSWARLGRVPTPRLAPPGRSASRGPQRAGRWTSVD
TPAARAMKEAQRRSEGWRNGGRQRDDVDGNLRWRALACAEWQCSPREALH
AQRQVAEQHGVDVGMAAPTSDAT back to topmRNA from alignment at Scaffold_11:554317..556734- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1043_3a-0001 ID=EsuBft1043_3a-0001|Name=EsuBft1043_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2418bp|location=Sequence derived from alignment at Scaffold_11:554317..556734- (Ectocarpus subulatus male Bft15b)
ATGGAGGCACACAACAGTTCAGAAGGCAGCTTAAGTGAGACTTCAGAGGT
GGTTCACTCGCGCATCTTGAGTCTGAGAAAGGGTGGCAACGACCACGGCG
CCGTCGTTGCAGCGGAAGAGAGCCTAAACCGGTCGGTCGACTCTCACGGT
CCCTCGTCAGCGGAGACCCGCAAAGTCGCAGCAGACCTTGTCTTAGCCTA
CAACCACCTCGCCATGAAAAGACTGTCGGAGAACAACATCAAGGTGTGCC
TGTTTGTGTAGTAGTCTAGACCGCACACGCAGGCGAACAAAGATCTTACA
ACATGCCGACCTACGAACGGGCGGCGATCATGATGCATGCATTCGATCTG
TACCTCGCGCAACATACGTATGGGGTCGAGTTCACGGGCGTGCATGTATG
TACGCACACAGCTATGTACCTCTCTGTAGCGTTTCCTTACCTACTAGCTT
GAACAGTATGCTACAGGTTCTGACTACCGTGGGTTGCGTAAGATATCACA
CCTCCCCTGCTCCAGCTCGATTTCTCCATGAATAAGAGTACGCCAAACAA
GAAAGGATACCACGTTATAGGCAAGCTCTCGAGGAGAACATTCACCAACG
CCGCTGTTGTAGGAGCCGTCGCTGTTTTAGCTATAGAATAATCAAACTCT
GGAAATTGGTAGGTCCCGGGGCGTGTGGGTCTTACGCAACCAATGCATAC
GGCACTGCCGTACATGCACACAAGACAGACAGATGAAAACAACGGCTATC
TATGGACTGTACGCAGCGTCCTCCCGCATGTAAACGTAGGAAATCCTCCA
GCCCCCGGGTGGTTCGGCAAAGTCCAACCGCATTCCCCTTCCACCAAACA
TTCACAAATCAATGATTCAGGCCTCAGGTCGCCTTCTGCAGAAAGCCTCA
CTGCTGACCAGCCGGGGGCAGCCTTTTCTTGGCAAGGCAAGGCTTCAGGC
TCGCGCGTTGACGCTCAACAACCTCGGCTGCCTGATGAAGAAGTGGGGAA
AGCCACGCGAAAGCGTCAAGTTTCTCGCCCGCGCTCTTAGAATAGAAGCC
AAGGTGCCCGGGGGCGCGGACAACCCCGCCGGCACGCATGTGAACATGAG
CGCCGCTTTGTCGACCATTGGGCTGCACCGGGAAGCCGCTACGCACGCCG
GTCACGCCATTGAACTCGCATCCCAAGCGATGATGGAGCAAAAAGCAGCG
TTCTCCTACGTCACAGGCCCAAATACCGCGAGTGGTGACCTAGCGGGCAT
GGAGGAGGACGGTGCTGCTGCATCGGTTGATCTTACTGCTGACGACAGTG
GGAGAAAGGGTGGTGTCGGGTGTAGCGATACTAGCGTTCCAAGTGTAGGG
GTCACAGGACGTCTGGAAAGCAGCAGCGTTCCTCGGCCGGAAGTCCACGG
GGAAGACGGGGAGACAGTTTGTTCTTCGGCCGTGGCGGATGATGGGCGTA
CATGTAGTCCTGAAGCATCCTCGTCAGTCCACGACGCGGACCATGACGTG
CCAGAAGGTGGAACAACAGCGAACCCCGCCGAAAACGGTACGGGAGGCCA
AGGAGGAGGAGGAGGAGGAGGAGGAGAGTCTACAGGGGCCGAAAAGAGCG
TTCAAGGAGACGCGAGCTCGGTCGACAGGCAAGACCGACACCAATCGGCG
GCGGGAGGGCTCCTCGCCATCGCCTGTTTCAACCTTGGGGTCGAGAGGGA
GCACCTTGGTCAGCTGGACGCGGCAATCGCCTCGTACAAGGACGCGCGCT
CGGCGGCCGACCAGCACCTTGGGCCGGAGAGTCCCGTCGCGAAGGGGATT
GAAATCGCGCTCGAGAAAGCCTCCGCCGCCGCCTCCGCCGCCGCCTCCTA
CTCCCGTAAGCGCGCGGCTTCACGCTCCCGAGTAGCGGTGGCGTCCTTCC
CTTGCATAGGCAAGCTCAAGTTCGGCCACAAAAACTCGCAAGTGCCGTCA
CGCTTCGGCGGCGTGGGCCTTTCTCCGCGATGCCGGTCACAGCAGCAGCA
CGGCGAGGAAATCGTTGGCGAAGCAACGGCAAGGGACCTCCTCGAACTCG
CGTACACCAGCCCTCGTCCGTGCCCTGCCCCACCTCACAAAGACTCATGG
GCACGCCTCGGCCGCGTACCGACCCCTCGATTGGCCCCTCCAGGACGGTC
GGCATCGCGTGGCCCTCAGCGGGCGGGGAGATGGACGAGCGTCGACACCC
CGGCGGCGCGGGCTATGAAGGAAGCGCAGCGGCGGTCGGAAGGGTGGAGG
AACGGCGGCAGGCAGCGTGACGACGTCGACGGGAATTTGAGGTGGCGGGC
CTTAGCTTGTGCTGAGTGGCAGTGCAGTCCGAGGGAGGCACTGCACGCCC
AGCGGCAGGTTGCGGAGCAACACGGGGTGGATGTTGGGATGGCTGCGCCA
ACAAGCGATGCTACATAG back to topCoding sequence (CDS) from alignment at Scaffold_11:554317..556734- >EsuBft1043_3a-0001 ID=EsuBft1043_3a-0001|Name=EsuBft1043_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1872bp|location=Sequence derived from alignment at Scaffold_11:554317..556734- (Ectocarpus subulatus male Bft15b)
ATGGAGGCACACAACAGTTCAGAAGGCAGCTTAAGTGAGACTTCAGAGGT
GGTTCACTCGCGCATCTTGAGTCTGAGAAAGGGTGGCAACGACCACGGCG
CCGTCGTTGCAGCGGAAGAGAGCCTAAACCGGTCGGTCGACTCTCACGGT
CCCTCGTCAGCGGAGACCCGCAAAGTCGCAGCAGACCTTGTCTTAGCCTA
CAACCACCTCGCCATGAAAAGACTGTCGGAGAACAACATCAAGGAAATCC
TCCAGCCCCCGGGTGGTTCGGCAAAGTCCAACCGCATTCCCCTTCCACCA
AACATTCACAAATCAATGATTCAGGCCTCAGGTCGCCTTCTGCAGAAAGC
CTCACTGCTGACCAGCCGGGGGCAGCCTTTTCTTGGCAAGGCAAGGCTTC
AGGCTCGCGCGTTGACGCTCAACAACCTCGGCTGCCTGATGAAGAAGTGG
GGAAAGCCACGCGAAAGCGTCAAGTTTCTCGCCCGCGCTCTTAGAATAGA
AGCCAAGGTGCCCGGGGGCGCGGACAACCCCGCCGGCACGCATGTGAACA
TGAGCGCCGCTTTGTCGACCATTGGGCTGCACCGGGAAGCCGCTACGCAC
GCCGGTCACGCCATTGAACTCGCATCCCAAGCGATGATGGAGCAAAAAGC
AGCGTTCTCCTACGTCACAGGCCCAAATACCGCGAGTGGTGACCTAGCGG
GCATGGAGGAGGACGGTGCTGCTGCATCGGTTGATCTTACTGCTGACGAC
AGTGGGAGAAAGGGTGGTGTCGGGTGTAGCGATACTAGCGTTCCAAGTGT
AGGGGTCACAGGACGTCTGGAAAGCAGCAGCGTTCCTCGGCCGGAAGTCC
ACGGGGAAGACGGGGAGACAGTTTGTTCTTCGGCCGTGGCGGATGATGGG
CGTACATGTAGTCCTGAAGCATCCTCGTCAGTCCACGACGCGGACCATGA
CGTGCCAGAAGGTGGAACAACAGCGAACCCCGCCGAAAACGGTACGGGAG
GCCAAGGAGGAGGAGGAGGAGGAGGAGGAGAGTCTACAGGGGCCGAAAAG
AGCGTTCAAGGAGACGCGAGCTCGGTCGACAGGCAAGACCGACACCAATC
GGCGGCGGGAGGGCTCCTCGCCATCGCCTGTTTCAACCTTGGGGTCGAGA
GGGAGCACCTTGGTCAGCTGGACGCGGCAATCGCCTCGTACAAGGACGCG
CGCTCGGCGGCCGACCAGCACCTTGGGCCGGAGAGTCCCGTCGCGAAGGG
GATTGAAATCGCGCTCGAGAAAGCCTCCGCCGCCGCCTCCGCCGCCGCCT
CCTACTCCCGTAAGCGCGCGGCTTCACGCTCCCGAGTAGCGGTGGCGTCC
TTCCCTTGCATAGGCAAGCTCAAGTTCGGCCACAAAAACTCGCAAGTGCC
GTCACGCTTCGGCGGCGTGGGCCTTTCTCCGCGATGCCGGTCACAGCAGC
AGCACGGCGAGGAAATCGTTGGCGAAGCAACGGCAAGGGACCTCCTCGAA
CTCGCGTACACCAGCCCTCGTCCGTGCCCTGCCCCACCTCACAAAGACTC
ATGGGCACGCCTCGGCCGCGTACCGACCCCTCGATTGGCCCCTCCAGGAC
GGTCGGCATCGCGTGGCCCTCAGCGGGCGGGGAGATGGACGAGCGTCGAC
ACCCCGGCGGCGCGGGCTATGAAGGAAGCGCAGCGGCGGTCGGAAGGGTG
GAGGAACGGCGGCAGGCAGCGTGACGACGTCGACGGGAATTTGAGGTGGC
GGGCCTTAGCTTGTGCTGAGTGGCAGTGCAGTCCGAGGGAGGCACTGCAC
GCCCAGCGGCAGGTTGCGGAGCAACACGGGGTGGATGTTGGGATGGCTGC
GCCAACAAGCGATGCTACATAG back to top
|