EsuBft1043_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1043_3a-0001
Unique NameEsuBft1043_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_11contigScaffold_11:554317..556734 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog55529.EKX41349
ProteomeIdEsuBft1043_3
Protein domainsIPR001440
Protein domainsIPR011990
Protein domainsIPR019734
Protein domainsSSF48452
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length187
Hectar predicted targeting categoryother localisation
Evalue1.12e-13
EggNOG OGs28ZWJ@1|root,2R6RA@2759|Eukaryota
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-20_004460.1
Date last modified2016-06-13
Date creation2016-06-13
DescriptionTetratricopeptide repeat
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1043_3aEsuBft1043_3aEctocarpus subulatus male Bft15bgeneScaffold_11 554317..556734 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1043_3a-0001-exonagat-exon-42530Ectocarpus subulatus male Bft15bexonScaffold_11 554317..555945 -
EsuBft1043_3a-0001-exonEsuBft1043_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_11 556492..556734 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1043_3a-0001-cdsEsuBft1043_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_11 554317..555945 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1043_3a-0001EsuBft1043_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_11 554317..556734 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1043_3a-0001 ID=EsuBft1043_3a-0001|Name=EsuBft1043_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1872bp|location=Sequence derived from alignment at Scaffold_11:554317..556734- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGCACACAACAGTTCAGAAGGCAGCTTAAGTGAGACTTCAGAGGT
GGTTCACTCGCGCATCTTGAGTCTGAGAAAGGGTGGCAACGACCACGGCG
CCGTCGTTGCAGCGGAAGAGAGCCTAAACCGGTCGGTCGACTCTCACGGT
CCCTCGTCAGCGGAGACCCGCAAAGTCGCAGCAGACCTTGTCTTAGCCTA
CAACCACCTCGCCATGAAAAGACTGTCGGAGAACAACATCAAGGAAATCC
TCCAGCCCCCGGGTGGTTCGGCAAAGTCCAACCGCATTCCCCTTCCACCA
AACATTCACAAATCAATGATTCAGGCCTCAGGTCGCCTTCTGCAGAAAGC
CTCACTGCTGACCAGCCGGGGGCAGCCTTTTCTTGGCAAGGCAAGGCTTC
AGGCTCGCGCGTTGACGCTCAACAACCTCGGCTGCCTGATGAAGAAGTGG
GGAAAGCCACGCGAAAGCGTCAAGTTTCTCGCCCGCGCTCTTAGAATAGA
AGCCAAGGTGCCCGGGGGCGCGGACAACCCCGCCGGCACGCATGTGAACA
TGAGCGCCGCTTTGTCGACCATTGGGCTGCACCGGGAAGCCGCTACGCAC
GCCGGTCACGCCATTGAACTCGCATCCCAAGCGATGATGGAGCAAAAAGC
AGCGTTCTCCTACGTCACAGGCCCAAATACCGCGAGTGGTGACCTAGCGG
GCATGGAGGAGGACGGTGCTGCTGCATCGGTTGATCTTACTGCTGACGAC
AGTGGGAGAAAGGGTGGTGTCGGGTGTAGCGATACTAGCGTTCCAAGTGT
AGGGGTCACAGGACGTCTGGAAAGCAGCAGCGTTCCTCGGCCGGAAGTCC
ACGGGGAAGACGGGGAGACAGTTTGTTCTTCGGCCGTGGCGGATGATGGG
CGTACATGTAGTCCTGAAGCATCCTCGTCAGTCCACGACGCGGACCATGA
CGTGCCAGAAGGTGGAACAACAGCGAACCCCGCCGAAAACGGTACGGGAG
GCCAAGGAGGAGGAGGAGGAGGAGGAGGAGAGTCTACAGGGGCCGAAAAG
AGCGTTCAAGGAGACGCGAGCTCGGTCGACAGGCAAGACCGACACCAATC
GGCGGCGGGAGGGCTCCTCGCCATCGCCTGTTTCAACCTTGGGGTCGAGA
GGGAGCACCTTGGTCAGCTGGACGCGGCAATCGCCTCGTACAAGGACGCG
CGCTCGGCGGCCGACCAGCACCTTGGGCCGGAGAGTCCCGTCGCGAAGGG
GATTGAAATCGCGCTCGAGAAAGCCTCCGCCGCCGCCTCCGCCGCCGCCT
CCTACTCCCGTAAGCGCGCGGCTTCACGCTCCCGAGTAGCGGTGGCGTCC
TTCCCTTGCATAGGCAAGCTCAAGTTCGGCCACAAAAACTCGCAAGTGCC
GTCACGCTTCGGCGGCGTGGGCCTTTCTCCGCGATGCCGGTCACAGCAGC
AGCACGGCGAGGAAATCGTTGGCGAAGCAACGGCAAGGGACCTCCTCGAA
CTCGCGTACACCAGCCCTCGTCCGTGCCCTGCCCCACCTCACAAAGACTC
ATGGGCACGCCTCGGCCGCGTACCGACCCCTCGATTGGCCCCTCCAGGAC
GGTCGGCATCGCGTGGCCCTCAGCGGGCGGGGAGATGGACGAGCGTCGAC
ACCCCGGCGGCGCGGGCTATGAAGGAAGCGCAGCGGCGGTCGGAAGGGTG
GAGGAACGGCGGCAGGCAGCGTGACGACGTCGACGGGAATTTGAGGTGGC
GGGCCTTAGCTTGTGCTGAGTGGCAGTGCAGTCCGAGGGAGGCACTGCAC
GCCCAGCGGCAGGTTGCGGAGCAACACGGGGTGGATGTTGGGATGGCTGC
GCCAACAAGCGATGCTACATAG
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protein sequence of EsuBft1043_3a-0001

>EsuBft1043_3 ID=EsuBft1043_3|Name=EsuBft1043_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=623bp
MEAHNSSEGSLSETSEVVHSRILSLRKGGNDHGAVVAAEESLNRSVDSHG
PSSAETRKVAADLVLAYNHLAMKRLSENNIKEILQPPGGSAKSNRIPLPP
NIHKSMIQASGRLLQKASLLTSRGQPFLGKARLQARALTLNNLGCLMKKW
GKPRESVKFLARALRIEAKVPGGADNPAGTHVNMSAALSTIGLHREAATH
AGHAIELASQAMMEQKAAFSYVTGPNTASGDLAGMEEDGAAASVDLTADD
SGRKGGVGCSDTSVPSVGVTGRLESSSVPRPEVHGEDGETVCSSAVADDG
RTCSPEASSSVHDADHDVPEGGTTANPAENGTGGQGGGGGGGGESTGAEK
SVQGDASSVDRQDRHQSAAGGLLAIACFNLGVEREHLGQLDAAIASYKDA
RSAADQHLGPESPVAKGIEIALEKASAAASAAASYSRKRAASRSRVAVAS
FPCIGKLKFGHKNSQVPSRFGGVGLSPRCRSQQQHGEEIVGEATARDLLE
LAYTSPRPCPAPPHKDSWARLGRVPTPRLAPPGRSASRGPQRAGRWTSVD
TPAARAMKEAQRRSEGWRNGGRQRDDVDGNLRWRALACAEWQCSPREALH
AQRQVAEQHGVDVGMAAPTSDAT
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mRNA from alignment at Scaffold_11:554317..556734-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1043_3a-0001 ID=EsuBft1043_3a-0001|Name=EsuBft1043_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2418bp|location=Sequence derived from alignment at Scaffold_11:554317..556734- (Ectocarpus subulatus male Bft15b)
ATGGAGGCACACAACAGTTCAGAAGGCAGCTTAAGTGAGACTTCAGAGGT
GGTTCACTCGCGCATCTTGAGTCTGAGAAAGGGTGGCAACGACCACGGCG
CCGTCGTTGCAGCGGAAGAGAGCCTAAACCGGTCGGTCGACTCTCACGGT
CCCTCGTCAGCGGAGACCCGCAAAGTCGCAGCAGACCTTGTCTTAGCCTA
CAACCACCTCGCCATGAAAAGACTGTCGGAGAACAACATCAAGGTGTGCC
TGTTTGTGTAGTAGTCTAGACCGCACACGCAGGCGAACAAAGATCTTACA
ACATGCCGACCTACGAACGGGCGGCGATCATGATGCATGCATTCGATCTG
TACCTCGCGCAACATACGTATGGGGTCGAGTTCACGGGCGTGCATGTATG
TACGCACACAGCTATGTACCTCTCTGTAGCGTTTCCTTACCTACTAGCTT
GAACAGTATGCTACAGGTTCTGACTACCGTGGGTTGCGTAAGATATCACA
CCTCCCCTGCTCCAGCTCGATTTCTCCATGAATAAGAGTACGCCAAACAA
GAAAGGATACCACGTTATAGGCAAGCTCTCGAGGAGAACATTCACCAACG
CCGCTGTTGTAGGAGCCGTCGCTGTTTTAGCTATAGAATAATCAAACTCT
GGAAATTGGTAGGTCCCGGGGCGTGTGGGTCTTACGCAACCAATGCATAC
GGCACTGCCGTACATGCACACAAGACAGACAGATGAAAACAACGGCTATC
TATGGACTGTACGCAGCGTCCTCCCGCATGTAAACGTAGGAAATCCTCCA
GCCCCCGGGTGGTTCGGCAAAGTCCAACCGCATTCCCCTTCCACCAAACA
TTCACAAATCAATGATTCAGGCCTCAGGTCGCCTTCTGCAGAAAGCCTCA
CTGCTGACCAGCCGGGGGCAGCCTTTTCTTGGCAAGGCAAGGCTTCAGGC
TCGCGCGTTGACGCTCAACAACCTCGGCTGCCTGATGAAGAAGTGGGGAA
AGCCACGCGAAAGCGTCAAGTTTCTCGCCCGCGCTCTTAGAATAGAAGCC
AAGGTGCCCGGGGGCGCGGACAACCCCGCCGGCACGCATGTGAACATGAG
CGCCGCTTTGTCGACCATTGGGCTGCACCGGGAAGCCGCTACGCACGCCG
GTCACGCCATTGAACTCGCATCCCAAGCGATGATGGAGCAAAAAGCAGCG
TTCTCCTACGTCACAGGCCCAAATACCGCGAGTGGTGACCTAGCGGGCAT
GGAGGAGGACGGTGCTGCTGCATCGGTTGATCTTACTGCTGACGACAGTG
GGAGAAAGGGTGGTGTCGGGTGTAGCGATACTAGCGTTCCAAGTGTAGGG
GTCACAGGACGTCTGGAAAGCAGCAGCGTTCCTCGGCCGGAAGTCCACGG
GGAAGACGGGGAGACAGTTTGTTCTTCGGCCGTGGCGGATGATGGGCGTA
CATGTAGTCCTGAAGCATCCTCGTCAGTCCACGACGCGGACCATGACGTG
CCAGAAGGTGGAACAACAGCGAACCCCGCCGAAAACGGTACGGGAGGCCA
AGGAGGAGGAGGAGGAGGAGGAGGAGAGTCTACAGGGGCCGAAAAGAGCG
TTCAAGGAGACGCGAGCTCGGTCGACAGGCAAGACCGACACCAATCGGCG
GCGGGAGGGCTCCTCGCCATCGCCTGTTTCAACCTTGGGGTCGAGAGGGA
GCACCTTGGTCAGCTGGACGCGGCAATCGCCTCGTACAAGGACGCGCGCT
CGGCGGCCGACCAGCACCTTGGGCCGGAGAGTCCCGTCGCGAAGGGGATT
GAAATCGCGCTCGAGAAAGCCTCCGCCGCCGCCTCCGCCGCCGCCTCCTA
CTCCCGTAAGCGCGCGGCTTCACGCTCCCGAGTAGCGGTGGCGTCCTTCC
CTTGCATAGGCAAGCTCAAGTTCGGCCACAAAAACTCGCAAGTGCCGTCA
CGCTTCGGCGGCGTGGGCCTTTCTCCGCGATGCCGGTCACAGCAGCAGCA
CGGCGAGGAAATCGTTGGCGAAGCAACGGCAAGGGACCTCCTCGAACTCG
CGTACACCAGCCCTCGTCCGTGCCCTGCCCCACCTCACAAAGACTCATGG
GCACGCCTCGGCCGCGTACCGACCCCTCGATTGGCCCCTCCAGGACGGTC
GGCATCGCGTGGCCCTCAGCGGGCGGGGAGATGGACGAGCGTCGACACCC
CGGCGGCGCGGGCTATGAAGGAAGCGCAGCGGCGGTCGGAAGGGTGGAGG
AACGGCGGCAGGCAGCGTGACGACGTCGACGGGAATTTGAGGTGGCGGGC
CTTAGCTTGTGCTGAGTGGCAGTGCAGTCCGAGGGAGGCACTGCACGCCC
AGCGGCAGGTTGCGGAGCAACACGGGGTGGATGTTGGGATGGCTGCGCCA
ACAAGCGATGCTACATAG
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Coding sequence (CDS) from alignment at Scaffold_11:554317..556734-

>EsuBft1043_3a-0001 ID=EsuBft1043_3a-0001|Name=EsuBft1043_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1872bp|location=Sequence derived from alignment at Scaffold_11:554317..556734- (Ectocarpus subulatus male Bft15b)
ATGGAGGCACACAACAGTTCAGAAGGCAGCTTAAGTGAGACTTCAGAGGT
GGTTCACTCGCGCATCTTGAGTCTGAGAAAGGGTGGCAACGACCACGGCG
CCGTCGTTGCAGCGGAAGAGAGCCTAAACCGGTCGGTCGACTCTCACGGT
CCCTCGTCAGCGGAGACCCGCAAAGTCGCAGCAGACCTTGTCTTAGCCTA
CAACCACCTCGCCATGAAAAGACTGTCGGAGAACAACATCAAGGAAATCC
TCCAGCCCCCGGGTGGTTCGGCAAAGTCCAACCGCATTCCCCTTCCACCA
AACATTCACAAATCAATGATTCAGGCCTCAGGTCGCCTTCTGCAGAAAGC
CTCACTGCTGACCAGCCGGGGGCAGCCTTTTCTTGGCAAGGCAAGGCTTC
AGGCTCGCGCGTTGACGCTCAACAACCTCGGCTGCCTGATGAAGAAGTGG
GGAAAGCCACGCGAAAGCGTCAAGTTTCTCGCCCGCGCTCTTAGAATAGA
AGCCAAGGTGCCCGGGGGCGCGGACAACCCCGCCGGCACGCATGTGAACA
TGAGCGCCGCTTTGTCGACCATTGGGCTGCACCGGGAAGCCGCTACGCAC
GCCGGTCACGCCATTGAACTCGCATCCCAAGCGATGATGGAGCAAAAAGC
AGCGTTCTCCTACGTCACAGGCCCAAATACCGCGAGTGGTGACCTAGCGG
GCATGGAGGAGGACGGTGCTGCTGCATCGGTTGATCTTACTGCTGACGAC
AGTGGGAGAAAGGGTGGTGTCGGGTGTAGCGATACTAGCGTTCCAAGTGT
AGGGGTCACAGGACGTCTGGAAAGCAGCAGCGTTCCTCGGCCGGAAGTCC
ACGGGGAAGACGGGGAGACAGTTTGTTCTTCGGCCGTGGCGGATGATGGG
CGTACATGTAGTCCTGAAGCATCCTCGTCAGTCCACGACGCGGACCATGA
CGTGCCAGAAGGTGGAACAACAGCGAACCCCGCCGAAAACGGTACGGGAG
GCCAAGGAGGAGGAGGAGGAGGAGGAGGAGAGTCTACAGGGGCCGAAAAG
AGCGTTCAAGGAGACGCGAGCTCGGTCGACAGGCAAGACCGACACCAATC
GGCGGCGGGAGGGCTCCTCGCCATCGCCTGTTTCAACCTTGGGGTCGAGA
GGGAGCACCTTGGTCAGCTGGACGCGGCAATCGCCTCGTACAAGGACGCG
CGCTCGGCGGCCGACCAGCACCTTGGGCCGGAGAGTCCCGTCGCGAAGGG
GATTGAAATCGCGCTCGAGAAAGCCTCCGCCGCCGCCTCCGCCGCCGCCT
CCTACTCCCGTAAGCGCGCGGCTTCACGCTCCCGAGTAGCGGTGGCGTCC
TTCCCTTGCATAGGCAAGCTCAAGTTCGGCCACAAAAACTCGCAAGTGCC
GTCACGCTTCGGCGGCGTGGGCCTTTCTCCGCGATGCCGGTCACAGCAGC
AGCACGGCGAGGAAATCGTTGGCGAAGCAACGGCAAGGGACCTCCTCGAA
CTCGCGTACACCAGCCCTCGTCCGTGCCCTGCCCCACCTCACAAAGACTC
ATGGGCACGCCTCGGCCGCGTACCGACCCCTCGATTGGCCCCTCCAGGAC
GGTCGGCATCGCGTGGCCCTCAGCGGGCGGGGAGATGGACGAGCGTCGAC
ACCCCGGCGGCGCGGGCTATGAAGGAAGCGCAGCGGCGGTCGGAAGGGTG
GAGGAACGGCGGCAGGCAGCGTGACGACGTCGACGGGAATTTGAGGTGGC
GGGCCTTAGCTTGTGCTGAGTGGCAGTGCAGTCCGAGGGAGGCACTGCAC
GCCCAGCGGCAGGTTGCGGAGCAACACGGGGTGGATGTTGGGATGGCTGC
GCCAACAAGCGATGCTACATAG
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