Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LC56 |
| ProteomeId | EsuBft1043_10 |
| Protein domains | IPR024079 |
| Protein domains | SSF55486 |
| Protein domains | PF13583 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | peptidyl-asp metalloendopeptidase os:xanthomonas campestris campestris (strain atcc 33913 ncppb 528 lmg 568) gn:xcc0955 pe:3 sv:1 [Automatic annotation] |
| Nb exon | 9 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1374 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.39e-250 |
| EggNOG OGs | 2E79G@1|root,2SDWE@2759|Eukaryota |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | Metallo-peptidase family M12B Reprolysin-like |
| COG category | S |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0008237 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1043_10a-0001 ID=EsuBft1043_10a-0001|Name=EsuBft1043_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1374bp|location=Sequence derived from alignment at Scaffold_11:475278..479233- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGACGTGGACTGCTGACTGCTCCACCCAGAACTTCGTGGTGCAGATGAT
ATCTCCAGCCAAAGACGGGGGTGTAGACACGGTGGTCTCTCTCCCAAACC
CCAGCAACGGGGAAAACTTCTTACTCGCAACCATCCACTACAATTCCATA
GACGAAATTGATGTCGAGGATGACATCGGGCGACGCCTCCAGATCGCCGA
CAGCGTCGGTGAGCAAACCAACCTGCGAGAAGGGGCCCAACGGTATGCTC
TCGACGACGGTTTGGAAATCTTGACTCCTCGACGGCTCCTCGCCAAGGAG
GCGGAAAGGGGAATCGAGAGGGCAAGGCTGGAAGACCCGGACATCGACGC
CAAGGATTGCGACATCCGCCTACTCCAGGCAAATAAGATTATTGATTTGG
CAAGTTCGGTCTCACATCTCCGCCCCCCATTGCCTTCTGCTTGGAACTAC
CCTTCCATTCCAAAGGAATACCGGTCAGCTTCTCCGGAAGGCCAAGAGGC
ATTCCACGAACGTGGACTTCGCCGCCTGAACGAGGACAACGTTGTCATGC
CTGGCGGCCGAGTGCTTTCGAGTGAGACCGTGATCGACGTGTTGGTGCTG
TACACGGAAAAAGCCATGCTGGAGTCGAACTCCGTAGACGGAGCTGGCCG
AAGTATTGCACAGATGGAGAGCGACATAGCCACGGCCTACCAAGGGGCGA
ACAACGCTCTGTCGGCGTCTGGGGTCAACTTCTCCGTGAGGATCGTGCAC
ATGGAACAGGCTCCTTTCGACGAAAGCGACAGCATCGTCGACGACGTGCG
CGCCCTCCAGAAGAACGAGGGCGTGCACAAGCTGCGCGACGAATACGGCG
CTGACCTCGTCCAGCTGATCGGTTACTACCTCAACACCTGCGGTGTCGGG
TCCAAGGTCTCCAGTTTTTTTGCCCTGTATCCCGCGCGTACGCACAGGTT
TACCATGGGCACACCCTCTTCCGGCTTCGCTCAGTACGGCTACTCGGTGG
TCCACACCAACTGCCTGTCCAACTTCTCGCACATTCACGAGCTCGGGCAC
AACTTCGGAGCCAACCACAACAAGGAGAACGTGGGGGGGAGCGGGGGCGT
GGATGCCTACAACTACGCGTACCGCAACTGCGACGTAGGCACGAAGTTTC
GCACAATCATGGCATACTCCTCGGGTTGCCCTTCAACTCCACGGGTAAAC
GTCTTCTCCAACCCCGACCTCACCTACGCCAACCAGCGCCAAGGGACGGA
AAACGCAAACAACGCCCGTGTCTTGAACGAAGCCATGGTCACAGACTGGA
ACTCCCTTGGAGCAAGTGATGAACTGAAACAAACGAGAAGCTACCGTTCC
ACCTTGGAGAGAACGAAGTGTTGA back to topprotein sequence of EsuBft1043_10a-0001 >EsuBft1043_10 ID=EsuBft1043_10|Name=EsuBft1043_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=457bp
MTWTADCSTQNFVVQMISPAKDGGVDTVVSLPNPSNGENFLLATIHYNSI
DEIDVEDDIGRRLQIADSVGEQTNLREGAQRYALDDGLEILTPRRLLAKE
AERGIERARLEDPDIDAKDCDIRLLQANKIIDLASSVSHLRPPLPSAWNY
PSIPKEYRSASPEGQEAFHERGLRRLNEDNVVMPGGRVLSSETVIDVLVL
YTEKAMLESNSVDGAGRSIAQMESDIATAYQGANNALSASGVNFSVRIVH
MEQAPFDESDSIVDDVRALQKNEGVHKLRDEYGADLVQLIGYYLNTCGVG
SKVSSFFALYPARTHRFTMGTPSSGFAQYGYSVVHTNCLSNFSHIHELGH
NFGANHNKENVGGSGGVDAYNYAYRNCDVGTKFRTIMAYSSGCPSTPRVN
VFSNPDLTYANQRQGTENANNARVLNEAMVTDWNSLGASDELKQTRSYRS
TLERTKC back to topmRNA from alignment at Scaffold_11:475278..479233- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1043_10a-0001 ID=EsuBft1043_10a-0001|Name=EsuBft1043_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3956bp|location=Sequence derived from alignment at Scaffold_11:475278..479233- (Ectocarpus subulatus male Bft15b)
ATGACGTGGACTGCTGACTGCTCCACCCAGGTAAAGAGGGTGCATGGTCA
TCGTTGTTCCTGGGTCATGTGACGAGGCTACTGCTGAGCACTTTGCACAC
ACGACTTGCTCCCCCTCCCGCAACGATTAAACAGCGGATGACAATCTACA
TGATGTTGAACAAGTGCATTGTTGAGGGCGTGTGCAATACACGCATGTGC
ACAGCAAAAGTTGAAACACGCCTCCTCCTCAGAACATCCACCCGGCTGCC
CCGACCATGGTTTCGCACGATGTCACCGCTGCAGAACTTCGTGGTGCAGA
TGATATCTCCAGCCAAAGACGGGGGTGTAGACACGGTGGTCTCTCTCCCA
AACCCCAGCAACGGGGAAAACTTCTTACTCGCAACCGTGAGTGCTGCAGG
ATAGCAGTATCTGGCAAGCTCTCAAAGAGGGCGTCGAACGGTATTTGGTG
TTGACCAAGGAGTCGAACTTTCTGGAGCATACCCGGAGAAAGTGCCTCCA
CGCTTGTAGCATGGCCCGGGGCGGCCGCAGTCTTGAGCCGTCATGACGAG
GGTGTGTACAAGAAGCAGGACTCGTTTGTTTCTATTGCTCGCGAAAGAAC
ATCACTGGCCACAGCACCCCACGATTCTCAAGCCACGCCAACAACCCTAC
CGTATCCTATCGTAGGTTTCTTGTTTGCTCTCTGCCATGAGGTTTCAAGA
AACACATGTCGAATACCTTATGGGAGAATCTTTTGCCCAGTTTGTGCTGT
TACTCGAACCCACACCCACCCGTGCTTGAAATCACCAGATCCACTACAAT
TCCATAGACGAAATTGATGTCGAGGATGACATCGGGCGACGCCTCCAGAT
CGCCGACAGCGTCGGTGAGCAAACCAACCTGCGAGAAGGGGCCCAACGGT
ATGCTCTCGACGACGGTTTGGAAATCTTGACTCCTCGACGGCTCCTCGCC
AAGGAGGCGGAAAGGGGAATCGAGAGGGCAAGGCTGGAAGACCCGGACAT
CGACGCCAAGGATTGCGACATCCGCCTACTCCAGGTGCGGCGCACAAAAG
AACAGCGTAGAACAGCTTAGGCAAAGAACGACCTCTGTAAGATGCCGATG
GGTGATCAAAAAGCCTTCCCAGTCGGTGAAAACCCGTGCTCCACCCCATC
CTTCAGGGACGAAAATGTCGATAGGCAAATAAGATTATTGATTTGGCAAG
TTCGGTCTCACATCTCCGCCCCCCATTGCCTTCTGCTTGGAACTACCCTT
CCATTCCAAAGGAATACCGGTCAGCTTCTCCGGAAGGCCAAGAGGCATTC
CACGAACGTGGACTTCGCCGCCTGAACGAGGACAACGTTGTCATGCCTGG
CGGCCGAGTGCTTTCGAGTGAGGTCAGACCAAGGAAGGGGAGGGTGTGTG
TGCCCGGCATGAGGCGTAGGGAGCTGCTGCTGTTCTTCGACTACAGTCTG
TTTTTTTACTCAAGAGACTTAGTGTTCACCTTACACATCCACGGCGTCAG
CTCGCCCGTTCGCGTTGATTTGTCTCTTTTGTGTCGAGCGTGGACTGGAC
TACCGAATTGTTGATCACTGAAAGAGTCTATCGCCCGGTACCACTTCCTC
GCTCCTGCACGACAACAATAGCATTTCATGGCTTCCGTCACACACACCCC
GAGCCCGAAGAGCGCCGACGGTATGGGCCCGCAGCCAAAAACATTTTGCT
AACCAATAGAAGCTCAAATTTCACGGAAGGCATGAAAACAGGGTTCAGAA
ACACAGCTACCTCAGCGGTGGATCCTCGACAAAACTCTACTATAACAACC
TGTGCTCGACAGTGGTGGCGATGAAATAAGAATCGGAGCCTCGACGCAAA
TTTGGCGTTTTCTATCTCCGGGCCCGTTCTGTAATCGTTGTCTCCCCTCA
TCCTGTGCGAAACGAAAACCAGACCGTGATCGACGTGTTGGTGCTGTACA
CGGAAAAAGCCATGCTGGAGTCGAACTCCGTAGACGGAGCTGGCCGAAGT
ATTGCACAGATGGAGAGCGACATAGCCACGGCCTACCAAGGGGCGAACAA
CGCTCTGTCGGCGTCTGGGGTCAACTTCTCCGTGAGGATCGTGCACATGG
AACAGGTACTGTCTGGATGTACGCATACTCGTTACGAAAGGTTTGACGTG
CTTGACGGTCCAAAGCAAGAAAAGAAAATCAATTCGAGATATTAACTGTC
TGTCCACTCACAGCTATGGTGTGATGGAATAGGACTTCGATTAATGTTTC
ATTTGCTTGACTGTTGGTCCAGGGCCGTGGCGGCCACAATGGAGGCTGTC
AACTAGGCGGACATGACGGCGGCGGTATAGGGTTCAGCGATTATTAGCGG
GCCAATCTTGCTGGGAATGAAGCCTAGTGTCGCGACCATTTCGTCCAACT
GATGCCATGGAAGACGGTGCCTGAACCAAACAGATAACGCCTGGACCCAC
CCCACTCGCATCTCCTTCACCCCGTTGTTGGTGTCAGTATTCTCTCTATC
ACGGTTTGTTTGTGGGTTCAAAACACTGAGCCCATCTTTGACCCCGGCCA
CAGCATTCAAAAGCATCCACAGCTATCGTTGGTGGACGCATCATCAACAA
TCCCGCGACGGACTCCCCACCATGCCCCTCTCCCGCGTTTCTACTCCTTG
CTCGGCACGAGGGAACAGGCTCCTTTCGACGAAAGCGACAGCATCGTCGA
CGACGTGCGCGCCCTCCAGAAGAACGAGGGCGTGCACAAGCTGCGCGACG
AATACGGCGCTGACCTCGTCCAGCTGATCGGTTACTACCTCAACACCTGC
GGTGTCGGGTAGGTCACTTTTCTTGCCATTCGCTGAGCCTGGTTCGGCGG
GCCCAACCTTCTGTTGTTTCGACATCGTATGGCCGGGTACGAGTCTTGTG
TCTCCAGGTCCAAGGTCTCCAGTTTTTTTGCCCTGTATCCCGCGCGTACG
CACAGGTTTACCATGGGCACACCCTCTTCCGGCTTCGCTCAGTACGGCTA
CTCGGTGGTCCACACCAACTGCCTGTCCAACTTCTCGCACATTCACGAGC
TCGGGCACAACTTCGGAGCCAACCACAACAAGGAGAACGTGGGGGGGAGC
GGGGGCGTGGATGCCTACAACTACGCGTACCGCAACTGCGACGTAGGCAC
GAAGTAAGTGCTCTTCATGTTCCAAATCCTGTGCCGAGTGTTCAGAGAGT
CCGTCTCTCTACCTGACAACGATGAACGGGCTAGTCGTTGTTGTCGGGCG
GCCAGATTACCACTTCCAGTAGCCCGTGCCGCCTAGAGTATTGTAGGCCA
GTGCAACAACTCACGGCCTGACGGAAGGGTGAAAACCGTGGAGGTCACGT
AGGGGTGCTGGCAAAGCTGCGTGACGCACGTTCCTGTCTCCCGCGTCACG
TCGAGTATTCACCAGGTAGTATTAGGTGGACCAAGTAACACAAGTCTTGG
GCGAGTAAACGAAATTCACGCGGAATCCCACGCGCACCTCTCTCTTGAAA
GTCAATTCGGGTCGACCGCAACACAGGCTTGCCGTTACCGTGCTCTGTTT
TGAAGGTTTCGCACAATCATGGCATACTCCTCGGGTTGCCCTTCAACTCC
ACGGGTAAACGTCTTCTCCAACCCCGACCTCACCTACGCCAACCAGCGCC
AAGGGACGGAAAACGCAAACAACGCCCGTGTCTTGAACGAAGCCATGGTA
CGAAGCTTGCCTTGTCTGTTGAGTGTTGATAGTTTCTCGTCGTCGTCGTG
GTTGTTCTGCTGCCTCGGCCGTCAAAGCGAACAGCGATACGAGTTCTACG
CAGCTTCCTACGTACATCCTTCGTGTCCCCGTACCATCCGATCAATGACA
CGAGGCTTGATGGTCACAGGTCACAGACTGGAACTCCCTTGGAGCAAGTG
ATGAACTGAAACAAACGAGAAGCTACCGTTCCACCTTGGAGAGAACGAAG
TGTTGA back to topCoding sequence (CDS) from alignment at Scaffold_11:475278..479233- >EsuBft1043_10a-0001 ID=EsuBft1043_10a-0001|Name=EsuBft1043_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1374bp|location=Sequence derived from alignment at Scaffold_11:475278..479233- (Ectocarpus subulatus male Bft15b)
ATGACGTGGACTGCTGACTGCTCCACCCAGAACTTCGTGGTGCAGATGAT
ATCTCCAGCCAAAGACGGGGGTGTAGACACGGTGGTCTCTCTCCCAAACC
CCAGCAACGGGGAAAACTTCTTACTCGCAACCATCCACTACAATTCCATA
GACGAAATTGATGTCGAGGATGACATCGGGCGACGCCTCCAGATCGCCGA
CAGCGTCGGTGAGCAAACCAACCTGCGAGAAGGGGCCCAACGGTATGCTC
TCGACGACGGTTTGGAAATCTTGACTCCTCGACGGCTCCTCGCCAAGGAG
GCGGAAAGGGGAATCGAGAGGGCAAGGCTGGAAGACCCGGACATCGACGC
CAAGGATTGCGACATCCGCCTACTCCAGGCAAATAAGATTATTGATTTGG
CAAGTTCGGTCTCACATCTCCGCCCCCCATTGCCTTCTGCTTGGAACTAC
CCTTCCATTCCAAAGGAATACCGGTCAGCTTCTCCGGAAGGCCAAGAGGC
ATTCCACGAACGTGGACTTCGCCGCCTGAACGAGGACAACGTTGTCATGC
CTGGCGGCCGAGTGCTTTCGAGTGAGACCGTGATCGACGTGTTGGTGCTG
TACACGGAAAAAGCCATGCTGGAGTCGAACTCCGTAGACGGAGCTGGCCG
AAGTATTGCACAGATGGAGAGCGACATAGCCACGGCCTACCAAGGGGCGA
ACAACGCTCTGTCGGCGTCTGGGGTCAACTTCTCCGTGAGGATCGTGCAC
ATGGAACAGGCTCCTTTCGACGAAAGCGACAGCATCGTCGACGACGTGCG
CGCCCTCCAGAAGAACGAGGGCGTGCACAAGCTGCGCGACGAATACGGCG
CTGACCTCGTCCAGCTGATCGGTTACTACCTCAACACCTGCGGTGTCGGG
TCCAAGGTCTCCAGTTTTTTTGCCCTGTATCCCGCGCGTACGCACAGGTT
TACCATGGGCACACCCTCTTCCGGCTTCGCTCAGTACGGCTACTCGGTGG
TCCACACCAACTGCCTGTCCAACTTCTCGCACATTCACGAGCTCGGGCAC
AACTTCGGAGCCAACCACAACAAGGAGAACGTGGGGGGGAGCGGGGGCGT
GGATGCCTACAACTACGCGTACCGCAACTGCGACGTAGGCACGAAGTTTC
GCACAATCATGGCATACTCCTCGGGTTGCCCTTCAACTCCACGGGTAAAC
GTCTTCTCCAACCCCGACCTCACCTACGCCAACCAGCGCCAAGGGACGGA
AAACGCAAACAACGCCCGTGTCTTGAACGAAGCCATGGTCACAGACTGGA
ACTCCCTTGGAGCAAGTGATGAACTGAAACAAACGAGAAGCTACCGTTCC
ACCTTGGAGAGAACGAAGTGTTGA back to top
|