EsuBft1043_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1043_10a-0001
Unique NameEsuBft1043_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_11contigScaffold_11:475278..479233 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LC56
ProteomeIdEsuBft1043_10
Protein domainsIPR024079
Protein domainsSSF55486
Protein domainsPF13583
Ownerapollo_admin@sb-roscoff.fr
Notepeptidyl-asp metalloendopeptidase os:xanthomonas campestris campestris (strain atcc 33913 ncppb 528 lmg 568) gn:xcc0955 pe:3 sv:1 [Automatic annotation]
Nb exon9
Max annot lvl2759|Eukaryota
Length1374
Hectar predicted targeting categoryother localisation
Evalue1.39e-250
EggNOG OGs2E79G@1|root,2SDWE@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
DescriptionMetallo-peptidase family M12B Reprolysin-like
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0008237
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1043_10aEsuBft1043_10aEctocarpus subulatus male Bft15bgeneScaffold_11 475278..479233 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1043_10a-0001EsuBft1043_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_11 475278..479233 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1043_10a-0001-exonagat-exon-42581Ectocarpus subulatus male Bft15bexonScaffold_11 475278..475364 -
EsuBft1043_10a-0001-exonagat-exon-42588Ectocarpus subulatus male Bft15bexonScaffold_11 475537..475678 -
EsuBft1043_10a-0001-exonagat-exon-42587Ectocarpus subulatus male Bft15bexonScaffold_11 476081..476326 -
EsuBft1043_10a-0001-exonagat-exon-42583Ectocarpus subulatus male Bft15bexonScaffold_11 476426..476565 -
EsuBft1043_10a-0001-exonagat-exon-42585Ectocarpus subulatus male Bft15bexonScaffold_11 477129..477311 -
EsuBft1043_10a-0001-exonEsuBft1043_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_11 477862..478059 -
EsuBft1043_10a-0001-exonagat-exon-42584Ectocarpus subulatus male Bft15bexonScaffold_11 478200..478445 -
EsuBft1043_10a-0001-exonagat-exon-42586Ectocarpus subulatus male Bft15bexonScaffold_11 478848..478949 -
EsuBft1043_10a-0001-exonagat-exon-42582Ectocarpus subulatus male Bft15bexonScaffold_11 479204..479233 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1043_10a-0001-cdsEsuBft1043_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_11 475278..475364 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1043_10a-0001 ID=EsuBft1043_10a-0001|Name=EsuBft1043_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1374bp|location=Sequence derived from alignment at Scaffold_11:475278..479233- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTGGACTGCTGACTGCTCCACCCAGAACTTCGTGGTGCAGATGAT
ATCTCCAGCCAAAGACGGGGGTGTAGACACGGTGGTCTCTCTCCCAAACC
CCAGCAACGGGGAAAACTTCTTACTCGCAACCATCCACTACAATTCCATA
GACGAAATTGATGTCGAGGATGACATCGGGCGACGCCTCCAGATCGCCGA
CAGCGTCGGTGAGCAAACCAACCTGCGAGAAGGGGCCCAACGGTATGCTC
TCGACGACGGTTTGGAAATCTTGACTCCTCGACGGCTCCTCGCCAAGGAG
GCGGAAAGGGGAATCGAGAGGGCAAGGCTGGAAGACCCGGACATCGACGC
CAAGGATTGCGACATCCGCCTACTCCAGGCAAATAAGATTATTGATTTGG
CAAGTTCGGTCTCACATCTCCGCCCCCCATTGCCTTCTGCTTGGAACTAC
CCTTCCATTCCAAAGGAATACCGGTCAGCTTCTCCGGAAGGCCAAGAGGC
ATTCCACGAACGTGGACTTCGCCGCCTGAACGAGGACAACGTTGTCATGC
CTGGCGGCCGAGTGCTTTCGAGTGAGACCGTGATCGACGTGTTGGTGCTG
TACACGGAAAAAGCCATGCTGGAGTCGAACTCCGTAGACGGAGCTGGCCG
AAGTATTGCACAGATGGAGAGCGACATAGCCACGGCCTACCAAGGGGCGA
ACAACGCTCTGTCGGCGTCTGGGGTCAACTTCTCCGTGAGGATCGTGCAC
ATGGAACAGGCTCCTTTCGACGAAAGCGACAGCATCGTCGACGACGTGCG
CGCCCTCCAGAAGAACGAGGGCGTGCACAAGCTGCGCGACGAATACGGCG
CTGACCTCGTCCAGCTGATCGGTTACTACCTCAACACCTGCGGTGTCGGG
TCCAAGGTCTCCAGTTTTTTTGCCCTGTATCCCGCGCGTACGCACAGGTT
TACCATGGGCACACCCTCTTCCGGCTTCGCTCAGTACGGCTACTCGGTGG
TCCACACCAACTGCCTGTCCAACTTCTCGCACATTCACGAGCTCGGGCAC
AACTTCGGAGCCAACCACAACAAGGAGAACGTGGGGGGGAGCGGGGGCGT
GGATGCCTACAACTACGCGTACCGCAACTGCGACGTAGGCACGAAGTTTC
GCACAATCATGGCATACTCCTCGGGTTGCCCTTCAACTCCACGGGTAAAC
GTCTTCTCCAACCCCGACCTCACCTACGCCAACCAGCGCCAAGGGACGGA
AAACGCAAACAACGCCCGTGTCTTGAACGAAGCCATGGTCACAGACTGGA
ACTCCCTTGGAGCAAGTGATGAACTGAAACAAACGAGAAGCTACCGTTCC
ACCTTGGAGAGAACGAAGTGTTGA
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protein sequence of EsuBft1043_10a-0001

>EsuBft1043_10 ID=EsuBft1043_10|Name=EsuBft1043_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=457bp
MTWTADCSTQNFVVQMISPAKDGGVDTVVSLPNPSNGENFLLATIHYNSI
DEIDVEDDIGRRLQIADSVGEQTNLREGAQRYALDDGLEILTPRRLLAKE
AERGIERARLEDPDIDAKDCDIRLLQANKIIDLASSVSHLRPPLPSAWNY
PSIPKEYRSASPEGQEAFHERGLRRLNEDNVVMPGGRVLSSETVIDVLVL
YTEKAMLESNSVDGAGRSIAQMESDIATAYQGANNALSASGVNFSVRIVH
MEQAPFDESDSIVDDVRALQKNEGVHKLRDEYGADLVQLIGYYLNTCGVG
SKVSSFFALYPARTHRFTMGTPSSGFAQYGYSVVHTNCLSNFSHIHELGH
NFGANHNKENVGGSGGVDAYNYAYRNCDVGTKFRTIMAYSSGCPSTPRVN
VFSNPDLTYANQRQGTENANNARVLNEAMVTDWNSLGASDELKQTRSYRS
TLERTKC
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mRNA from alignment at Scaffold_11:475278..479233-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1043_10a-0001 ID=EsuBft1043_10a-0001|Name=EsuBft1043_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3956bp|location=Sequence derived from alignment at Scaffold_11:475278..479233- (Ectocarpus subulatus male Bft15b)
ATGACGTGGACTGCTGACTGCTCCACCCAGGTAAAGAGGGTGCATGGTCA
TCGTTGTTCCTGGGTCATGTGACGAGGCTACTGCTGAGCACTTTGCACAC
ACGACTTGCTCCCCCTCCCGCAACGATTAAACAGCGGATGACAATCTACA
TGATGTTGAACAAGTGCATTGTTGAGGGCGTGTGCAATACACGCATGTGC
ACAGCAAAAGTTGAAACACGCCTCCTCCTCAGAACATCCACCCGGCTGCC
CCGACCATGGTTTCGCACGATGTCACCGCTGCAGAACTTCGTGGTGCAGA
TGATATCTCCAGCCAAAGACGGGGGTGTAGACACGGTGGTCTCTCTCCCA
AACCCCAGCAACGGGGAAAACTTCTTACTCGCAACCGTGAGTGCTGCAGG
ATAGCAGTATCTGGCAAGCTCTCAAAGAGGGCGTCGAACGGTATTTGGTG
TTGACCAAGGAGTCGAACTTTCTGGAGCATACCCGGAGAAAGTGCCTCCA
CGCTTGTAGCATGGCCCGGGGCGGCCGCAGTCTTGAGCCGTCATGACGAG
GGTGTGTACAAGAAGCAGGACTCGTTTGTTTCTATTGCTCGCGAAAGAAC
ATCACTGGCCACAGCACCCCACGATTCTCAAGCCACGCCAACAACCCTAC
CGTATCCTATCGTAGGTTTCTTGTTTGCTCTCTGCCATGAGGTTTCAAGA
AACACATGTCGAATACCTTATGGGAGAATCTTTTGCCCAGTTTGTGCTGT
TACTCGAACCCACACCCACCCGTGCTTGAAATCACCAGATCCACTACAAT
TCCATAGACGAAATTGATGTCGAGGATGACATCGGGCGACGCCTCCAGAT
CGCCGACAGCGTCGGTGAGCAAACCAACCTGCGAGAAGGGGCCCAACGGT
ATGCTCTCGACGACGGTTTGGAAATCTTGACTCCTCGACGGCTCCTCGCC
AAGGAGGCGGAAAGGGGAATCGAGAGGGCAAGGCTGGAAGACCCGGACAT
CGACGCCAAGGATTGCGACATCCGCCTACTCCAGGTGCGGCGCACAAAAG
AACAGCGTAGAACAGCTTAGGCAAAGAACGACCTCTGTAAGATGCCGATG
GGTGATCAAAAAGCCTTCCCAGTCGGTGAAAACCCGTGCTCCACCCCATC
CTTCAGGGACGAAAATGTCGATAGGCAAATAAGATTATTGATTTGGCAAG
TTCGGTCTCACATCTCCGCCCCCCATTGCCTTCTGCTTGGAACTACCCTT
CCATTCCAAAGGAATACCGGTCAGCTTCTCCGGAAGGCCAAGAGGCATTC
CACGAACGTGGACTTCGCCGCCTGAACGAGGACAACGTTGTCATGCCTGG
CGGCCGAGTGCTTTCGAGTGAGGTCAGACCAAGGAAGGGGAGGGTGTGTG
TGCCCGGCATGAGGCGTAGGGAGCTGCTGCTGTTCTTCGACTACAGTCTG
TTTTTTTACTCAAGAGACTTAGTGTTCACCTTACACATCCACGGCGTCAG
CTCGCCCGTTCGCGTTGATTTGTCTCTTTTGTGTCGAGCGTGGACTGGAC
TACCGAATTGTTGATCACTGAAAGAGTCTATCGCCCGGTACCACTTCCTC
GCTCCTGCACGACAACAATAGCATTTCATGGCTTCCGTCACACACACCCC
GAGCCCGAAGAGCGCCGACGGTATGGGCCCGCAGCCAAAAACATTTTGCT
AACCAATAGAAGCTCAAATTTCACGGAAGGCATGAAAACAGGGTTCAGAA
ACACAGCTACCTCAGCGGTGGATCCTCGACAAAACTCTACTATAACAACC
TGTGCTCGACAGTGGTGGCGATGAAATAAGAATCGGAGCCTCGACGCAAA
TTTGGCGTTTTCTATCTCCGGGCCCGTTCTGTAATCGTTGTCTCCCCTCA
TCCTGTGCGAAACGAAAACCAGACCGTGATCGACGTGTTGGTGCTGTACA
CGGAAAAAGCCATGCTGGAGTCGAACTCCGTAGACGGAGCTGGCCGAAGT
ATTGCACAGATGGAGAGCGACATAGCCACGGCCTACCAAGGGGCGAACAA
CGCTCTGTCGGCGTCTGGGGTCAACTTCTCCGTGAGGATCGTGCACATGG
AACAGGTACTGTCTGGATGTACGCATACTCGTTACGAAAGGTTTGACGTG
CTTGACGGTCCAAAGCAAGAAAAGAAAATCAATTCGAGATATTAACTGTC
TGTCCACTCACAGCTATGGTGTGATGGAATAGGACTTCGATTAATGTTTC
ATTTGCTTGACTGTTGGTCCAGGGCCGTGGCGGCCACAATGGAGGCTGTC
AACTAGGCGGACATGACGGCGGCGGTATAGGGTTCAGCGATTATTAGCGG
GCCAATCTTGCTGGGAATGAAGCCTAGTGTCGCGACCATTTCGTCCAACT
GATGCCATGGAAGACGGTGCCTGAACCAAACAGATAACGCCTGGACCCAC
CCCACTCGCATCTCCTTCACCCCGTTGTTGGTGTCAGTATTCTCTCTATC
ACGGTTTGTTTGTGGGTTCAAAACACTGAGCCCATCTTTGACCCCGGCCA
CAGCATTCAAAAGCATCCACAGCTATCGTTGGTGGACGCATCATCAACAA
TCCCGCGACGGACTCCCCACCATGCCCCTCTCCCGCGTTTCTACTCCTTG
CTCGGCACGAGGGAACAGGCTCCTTTCGACGAAAGCGACAGCATCGTCGA
CGACGTGCGCGCCCTCCAGAAGAACGAGGGCGTGCACAAGCTGCGCGACG
AATACGGCGCTGACCTCGTCCAGCTGATCGGTTACTACCTCAACACCTGC
GGTGTCGGGTAGGTCACTTTTCTTGCCATTCGCTGAGCCTGGTTCGGCGG
GCCCAACCTTCTGTTGTTTCGACATCGTATGGCCGGGTACGAGTCTTGTG
TCTCCAGGTCCAAGGTCTCCAGTTTTTTTGCCCTGTATCCCGCGCGTACG
CACAGGTTTACCATGGGCACACCCTCTTCCGGCTTCGCTCAGTACGGCTA
CTCGGTGGTCCACACCAACTGCCTGTCCAACTTCTCGCACATTCACGAGC
TCGGGCACAACTTCGGAGCCAACCACAACAAGGAGAACGTGGGGGGGAGC
GGGGGCGTGGATGCCTACAACTACGCGTACCGCAACTGCGACGTAGGCAC
GAAGTAAGTGCTCTTCATGTTCCAAATCCTGTGCCGAGTGTTCAGAGAGT
CCGTCTCTCTACCTGACAACGATGAACGGGCTAGTCGTTGTTGTCGGGCG
GCCAGATTACCACTTCCAGTAGCCCGTGCCGCCTAGAGTATTGTAGGCCA
GTGCAACAACTCACGGCCTGACGGAAGGGTGAAAACCGTGGAGGTCACGT
AGGGGTGCTGGCAAAGCTGCGTGACGCACGTTCCTGTCTCCCGCGTCACG
TCGAGTATTCACCAGGTAGTATTAGGTGGACCAAGTAACACAAGTCTTGG
GCGAGTAAACGAAATTCACGCGGAATCCCACGCGCACCTCTCTCTTGAAA
GTCAATTCGGGTCGACCGCAACACAGGCTTGCCGTTACCGTGCTCTGTTT
TGAAGGTTTCGCACAATCATGGCATACTCCTCGGGTTGCCCTTCAACTCC
ACGGGTAAACGTCTTCTCCAACCCCGACCTCACCTACGCCAACCAGCGCC
AAGGGACGGAAAACGCAAACAACGCCCGTGTCTTGAACGAAGCCATGGTA
CGAAGCTTGCCTTGTCTGTTGAGTGTTGATAGTTTCTCGTCGTCGTCGTG
GTTGTTCTGCTGCCTCGGCCGTCAAAGCGAACAGCGATACGAGTTCTACG
CAGCTTCCTACGTACATCCTTCGTGTCCCCGTACCATCCGATCAATGACA
CGAGGCTTGATGGTCACAGGTCACAGACTGGAACTCCCTTGGAGCAAGTG
ATGAACTGAAACAAACGAGAAGCTACCGTTCCACCTTGGAGAGAACGAAG
TGTTGA
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Coding sequence (CDS) from alignment at Scaffold_11:475278..479233-

>EsuBft1043_10a-0001 ID=EsuBft1043_10a-0001|Name=EsuBft1043_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1374bp|location=Sequence derived from alignment at Scaffold_11:475278..479233- (Ectocarpus subulatus male Bft15b)
ATGACGTGGACTGCTGACTGCTCCACCCAGAACTTCGTGGTGCAGATGAT
ATCTCCAGCCAAAGACGGGGGTGTAGACACGGTGGTCTCTCTCCCAAACC
CCAGCAACGGGGAAAACTTCTTACTCGCAACCATCCACTACAATTCCATA
GACGAAATTGATGTCGAGGATGACATCGGGCGACGCCTCCAGATCGCCGA
CAGCGTCGGTGAGCAAACCAACCTGCGAGAAGGGGCCCAACGGTATGCTC
TCGACGACGGTTTGGAAATCTTGACTCCTCGACGGCTCCTCGCCAAGGAG
GCGGAAAGGGGAATCGAGAGGGCAAGGCTGGAAGACCCGGACATCGACGC
CAAGGATTGCGACATCCGCCTACTCCAGGCAAATAAGATTATTGATTTGG
CAAGTTCGGTCTCACATCTCCGCCCCCCATTGCCTTCTGCTTGGAACTAC
CCTTCCATTCCAAAGGAATACCGGTCAGCTTCTCCGGAAGGCCAAGAGGC
ATTCCACGAACGTGGACTTCGCCGCCTGAACGAGGACAACGTTGTCATGC
CTGGCGGCCGAGTGCTTTCGAGTGAGACCGTGATCGACGTGTTGGTGCTG
TACACGGAAAAAGCCATGCTGGAGTCGAACTCCGTAGACGGAGCTGGCCG
AAGTATTGCACAGATGGAGAGCGACATAGCCACGGCCTACCAAGGGGCGA
ACAACGCTCTGTCGGCGTCTGGGGTCAACTTCTCCGTGAGGATCGTGCAC
ATGGAACAGGCTCCTTTCGACGAAAGCGACAGCATCGTCGACGACGTGCG
CGCCCTCCAGAAGAACGAGGGCGTGCACAAGCTGCGCGACGAATACGGCG
CTGACCTCGTCCAGCTGATCGGTTACTACCTCAACACCTGCGGTGTCGGG
TCCAAGGTCTCCAGTTTTTTTGCCCTGTATCCCGCGCGTACGCACAGGTT
TACCATGGGCACACCCTCTTCCGGCTTCGCTCAGTACGGCTACTCGGTGG
TCCACACCAACTGCCTGTCCAACTTCTCGCACATTCACGAGCTCGGGCAC
AACTTCGGAGCCAACCACAACAAGGAGAACGTGGGGGGGAGCGGGGGCGT
GGATGCCTACAACTACGCGTACCGCAACTGCGACGTAGGCACGAAGTTTC
GCACAATCATGGCATACTCCTCGGGTTGCCCTTCAACTCCACGGGTAAAC
GTCTTCTCCAACCCCGACCTCACCTACGCCAACCAGCGCCAAGGGACGGA
AAACGCAAACAACGCCCGTGTCTTGAACGAAGCCATGGTCACAGACTGGA
ACTCCCTTGGAGCAAGTGATGAACTGAAACAAACGAGAAGCTACCGTTCC
ACCTTGGAGAGAACGAAGTGTTGA
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