EsuBft1042_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1042_5a-0001
Unique NameEsuBft1042_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_419contigScaffold_419:90280..92486 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6334.EFV49847
ProteomeIdEsuBft1042_5
Protein domainsIPR013103
Protein domainsSSF56672
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Notecopia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon3
Max annot lvl33208|Metazoa
Length1770
Hectar predicted targeting categoryother localisation
Evalue1.36e-59
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria
Date last modified2016-06-14
Date creation2016-06-14
DescriptionEncoded by
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
GO0097159
GO1901363
GO0044424
GO0090304
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1042_5aEsuBft1042_5aEctocarpus subulatus male Bft15bgeneScaffold_419 90280..92486 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1042_5a-0001-exonagat-exon-30226Ectocarpus subulatus male Bft15bexonScaffold_419 90280..91800 -
EsuBft1042_5a-0001-exonEsuBft1042_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_419 91928..92173 -
EsuBft1042_5a-0001-exonagat-exon-30225Ectocarpus subulatus male Bft15bexonScaffold_419 92484..92486 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1042_5a-0001-cdsEsuBft1042_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_419 90280..91800 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1042_5a-0001EsuBft1042_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_419 90280..92486 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1042_5a-0001 ID=EsuBft1042_5a-0001|Name=EsuBft1042_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1770bp|location=Sequence derived from alignment at Scaffold_419:90280..92486- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGACGTGTCATACGCTACCGCACCTTCCCAGCGAGCTGAGGGCTGA
AGCATTCCAGACCGCCATCTATCTCAAGAATCGCACACCAACTGAAGTCC
TGGGCGGCAAATCCCCACTCGAGGTATGGGAGGGGAAGCCGCTAGGTAAT
CTGCTGCACATTCACGAATGGGGTTCGATGGCCTTCAAACATGAGGGAGC
GCGTTTCCGTCCCAACAAGCTTGCGGCCAGGGCCAAGAAGATGTATCTGG
GCGCGATCCGTTTCCTGTGCCAAACACGACAATCTACCAACCTGGTGACC
TCGGAGGAGGATGCTTATCAGCAGGTGGAACAAGCTCTTCTGACAGGGGG
TGTACTCGGAAACATCGGGACGGGCAACCCTGGAGAAATAGGTTACAGGC
CTCCCGACCCGACCGATTACGACGACGCAACACGTGGACCAGATGCTGAC
CACTGGAGGGAGAGTATGCGCGAAGAAAATCGTTCGCTCACGGAACTCGA
CGTATACGATTGGGTGAAACGGCCGGCGGACGGTGATATACTTCCGTCAA
GATACCTATACAAACGGAAGTACGCAGCAGACGGAGAACTAGCTCGACTG
AAGAGTCGTATCGTGGTCCAAGGCTTCCATCAAGAAGACACGGGGGAAGA
CAAGGCATCATCAGTGGCGACATTGGAGGCGGTACATCTAGTAGTCGCCG
TCGCTGCTCAGAATGGCTTTGTTCTAAAACAGGCTGACATCAAGACAGCG
TTCCTACATGCCAGGATCCCCGCTAACGCAGACCCGATTTATGTTTGTCC
TCCGAAAGGTTTCGAATGCTCTCCAGAACAAGCACGGCAGGTGTGGCGGC
TAAAGGCATGGCTCTACGGATTGCGTCTCTCCCCGAAAGGCTGGTGCAGC
ACCTTCCACGACTTCCTGATTGAGAAAGGGTTCGTACAGAGTAAAGCAGA
CCCCTGTCTCTACATTCTCGAAGCGGAAGGAGTTATCCTTCTCGTGTACG
TTGACGACATCCTGCTGTCGGGGAAGGACGAGGAGAAGGTCATGATGGTC
GTTGATCTGCTGAAGGAACGGTTCAACACGGTGTTCTTGGGGGATGCTCA
GCACCTGCTTGGTATGAAGCTTGAGAGGAACGTCGACGCCGGTACCATAT
TCCTTTCTCAAGAGACGTACGCAAAGACCGTGCTCGACCAGTTCGGAATG
GCCGAATCGCGCCCGGTGAAGACACCTGCGGAACCTGGACCTATCAGCAC
CGAGGAGGAGAAGGTTTTATCTCCATCGGAATCACATACACCGAAGACGC
CGACGGCGGAGATAAACTCACGGCGCACGTGGACTCTGCTTTTGCAGGAC
AAAGGCTACTCCACAACCGGTGCCGTTCTCTATCTCGCAGGTGCCCCAGT
GGACTGGATATCCAAGAAGCAAACGGTGCTGGCCATCTCAACGTTCGAGG
CTGAAGCCGTTGCCCTGTCCAAGGCGTGCACTATTGTCATCCACTTTCGT
AATTTGCTGAAGTCGCTGAACATGAAGCAGGAGCAGCCCACGGTAGTGTT
TGAGGACAACACAGGCACTGTAGCGTTTGCTAAGGGCGCCAAACTCACGC
CCCGTAGTAAACATATCGACGTCAAGTATCACCACGTTCGGTACTTAGAG
GAGAAGAAAATCGTCGACGTCAAGTACATCGAGACTAACTTGCAGAAGGC
TGACATCCTGACTAAAAGCCAGGGAGCTGTGAAGTTCCTCCAGAACCGCC
TTCTCTTGCTTGGAGTGTAA
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protein sequence of EsuBft1042_5a-0001

>EsuBft1042_5 ID=EsuBft1042_5|Name=EsuBft1042_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=589bp
MTTCHTLPHLPSELRAEAFQTAIYLKNRTPTEVLGGKSPLEVWEGKPLGN
LLHIHEWGSMAFKHEGARFRPNKLAARAKKMYLGAIRFLCQTRQSTNLVT
SEEDAYQQVEQALLTGGVLGNIGTGNPGEIGYRPPDPTDYDDATRGPDAD
HWRESMREENRSLTELDVYDWVKRPADGDILPSRYLYKRKYAADGELARL
KSRIVVQGFHQEDTGEDKASSVATLEAVHLVVAVAAQNGFVLKQADIKTA
FLHARIPANADPIYVCPPKGFECSPEQARQVWRLKAWLYGLRLSPKGWCS
TFHDFLIEKGFVQSKADPCLYILEAEGVILLVYVDDILLSGKDEEKVMMV
VDLLKERFNTVFLGDAQHLLGMKLERNVDAGTIFLSQETYAKTVLDQFGM
AESRPVKTPAEPGPISTEEEKVLSPSESHTPKTPTAEINSRRTWTLLLQD
KGYSTTGAVLYLAGAPVDWISKKQTVLAISTFEAEAVALSKACTIVIHFR
NLLKSLNMKQEQPTVVFEDNTGTVAFAKGAKLTPRSKHIDVKYHHVRYLE
EKKIVDVKYIETNLQKADILTKSQGAVKFLQNRLLLLGV
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mRNA from alignment at Scaffold_419:90280..92486-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1042_5a-0001 ID=EsuBft1042_5a-0001|Name=EsuBft1042_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2207bp|location=Sequence derived from alignment at Scaffold_419:90280..92486- (Ectocarpus subulatus male Bft15b)
ATGGTTCTAGGCGCGCTCCCTGCTGCTGGCCTACCTCGTACTCTTCGCTC
TCTCGCATGACTTTTATCTAACCCTCTCCTGCTTTCACCTCGCAGCTGAC
GTCCGGACTCCTGCTGACTTCTTCTGCTTCAACCCGCGCGCTCTTGTCGA
CGCTGCGGGAGCTATCTTGTTCTTCGATCCTGGCGCCCTCCGCTGCTTGG
CCGGCCTCCGCTGCTTGACGGGCTTCATTTTCGCGCCTGGTAGCCATCTT
GACCCTGCTCTCGATCGCCGCAAAGCGATACTCCTAAACCAAGCTCGACC
GCGAATCTCGTAGACGACGTGTCATACGCTACCGCACCTTCCCAGCGAGC
TGAGGGCTGAAGCATTCCAGACCGCCATCTATCTCAAGAATCGCACACCA
ACTGAAGTCCTGGGCGGCAAATCCCCACTCGAGGTATGGGAGGGGAAGCC
GCTAGGTAATCTGCTGCACATTCACGAATGGGGTTCGATGGCCTTCAAAC
ATGAGGGAGCGCGTTTCCGTCCCAACAAGCTTGCGGCCAGGGCCAAGAAG
ATGTATCTGGTAGGCTAAAATACCAAGGGTAGGTCGTACAGACTGTGGGA
TCCTGCGGAGCCTTCTAAAATCACCAACTCTGCCGAAGTATCCTTCCGTG
AAAAGGAGATGCGCGACGTGGTTAAACCCAAAGTAGGGCGCGATCCGTTT
CCTGTGCCAAACACGACAATCTACCAACCTGGTGACCTCGGAGGAGGATG
CTTATCAGCAGGTGGAACAAGCTCTTCTGACAGGGGGTGTACTCGGAAAC
ATCGGGACGGGCAACCCTGGAGAAATAGGTTACAGGCCTCCCGACCCGAC
CGATTACGACGACGCAACACGTGGACCAGATGCTGACCACTGGAGGGAGA
GTATGCGCGAAGAAAATCGTTCGCTCACGGAACTCGACGTATACGATTGG
GTGAAACGGCCGGCGGACGGTGATATACTTCCGTCAAGATACCTATACAA
ACGGAAGTACGCAGCAGACGGAGAACTAGCTCGACTGAAGAGTCGTATCG
TGGTCCAAGGCTTCCATCAAGAAGACACGGGGGAAGACAAGGCATCATCA
GTGGCGACATTGGAGGCGGTACATCTAGTAGTCGCCGTCGCTGCTCAGAA
TGGCTTTGTTCTAAAACAGGCTGACATCAAGACAGCGTTCCTACATGCCA
GGATCCCCGCTAACGCAGACCCGATTTATGTTTGTCCTCCGAAAGGTTTC
GAATGCTCTCCAGAACAAGCACGGCAGGTGTGGCGGCTAAAGGCATGGCT
CTACGGATTGCGTCTCTCCCCGAAAGGCTGGTGCAGCACCTTCCACGACT
TCCTGATTGAGAAAGGGTTCGTACAGAGTAAAGCAGACCCCTGTCTCTAC
ATTCTCGAAGCGGAAGGAGTTATCCTTCTCGTGTACGTTGACGACATCCT
GCTGTCGGGGAAGGACGAGGAGAAGGTCATGATGGTCGTTGATCTGCTGA
AGGAACGGTTCAACACGGTGTTCTTGGGGGATGCTCAGCACCTGCTTGGT
ATGAAGCTTGAGAGGAACGTCGACGCCGGTACCATATTCCTTTCTCAAGA
GACGTACGCAAAGACCGTGCTCGACCAGTTCGGAATGGCCGAATCGCGCC
CGGTGAAGACACCTGCGGAACCTGGACCTATCAGCACCGAGGAGGAGAAG
GTTTTATCTCCATCGGAATCACATACACCGAAGACGCCGACGGCGGAGAT
AAACTCACGGCGCACGTGGACTCTGCTTTTGCAGGACAAAGGCTACTCCA
CAACCGGTGCCGTTCTCTATCTCGCAGGTGCCCCAGTGGACTGGATATCC
AAGAAGCAAACGGTGCTGGCCATCTCAACGTTCGAGGCTGAAGCCGTTGC
CCTGTCCAAGGCGTGCACTATTGTCATCCACTTTCGTAATTTGCTGAAGT
CGCTGAACATGAAGCAGGAGCAGCCCACGGTAGTGTTTGAGGACAACACA
GGCACTGTAGCGTTTGCTAAGGGCGCCAAACTCACGCCCCGTAGTAAACA
TATCGACGTCAAGTATCACCACGTTCGGTACTTAGAGGAGAAGAAAATCG
TCGACGTCAAGTACATCGAGACTAACTTGCAGAAGGCTGACATCCTGACT
AAAAGCCAGGGAGCTGTGAAGTTCCTCCAGAACCGCCTTCTCTTGCTTGG
AGTGTAA
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Coding sequence (CDS) from alignment at Scaffold_419:90280..92486-

>EsuBft1042_5a-0001 ID=EsuBft1042_5a-0001|Name=EsuBft1042_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1770bp|location=Sequence derived from alignment at Scaffold_419:90280..92486- (Ectocarpus subulatus male Bft15b)
ATGACGACGTGTCATACGCTACCGCACCTTCCCAGCGAGCTGAGGGCTGA
AGCATTCCAGACCGCCATCTATCTCAAGAATCGCACACCAACTGAAGTCC
TGGGCGGCAAATCCCCACTCGAGGTATGGGAGGGGAAGCCGCTAGGTAAT
CTGCTGCACATTCACGAATGGGGTTCGATGGCCTTCAAACATGAGGGAGC
GCGTTTCCGTCCCAACAAGCTTGCGGCCAGGGCCAAGAAGATGTATCTGG
GCGCGATCCGTTTCCTGTGCCAAACACGACAATCTACCAACCTGGTGACC
TCGGAGGAGGATGCTTATCAGCAGGTGGAACAAGCTCTTCTGACAGGGGG
TGTACTCGGAAACATCGGGACGGGCAACCCTGGAGAAATAGGTTACAGGC
CTCCCGACCCGACCGATTACGACGACGCAACACGTGGACCAGATGCTGAC
CACTGGAGGGAGAGTATGCGCGAAGAAAATCGTTCGCTCACGGAACTCGA
CGTATACGATTGGGTGAAACGGCCGGCGGACGGTGATATACTTCCGTCAA
GATACCTATACAAACGGAAGTACGCAGCAGACGGAGAACTAGCTCGACTG
AAGAGTCGTATCGTGGTCCAAGGCTTCCATCAAGAAGACACGGGGGAAGA
CAAGGCATCATCAGTGGCGACATTGGAGGCGGTACATCTAGTAGTCGCCG
TCGCTGCTCAGAATGGCTTTGTTCTAAAACAGGCTGACATCAAGACAGCG
TTCCTACATGCCAGGATCCCCGCTAACGCAGACCCGATTTATGTTTGTCC
TCCGAAAGGTTTCGAATGCTCTCCAGAACAAGCACGGCAGGTGTGGCGGC
TAAAGGCATGGCTCTACGGATTGCGTCTCTCCCCGAAAGGCTGGTGCAGC
ACCTTCCACGACTTCCTGATTGAGAAAGGGTTCGTACAGAGTAAAGCAGA
CCCCTGTCTCTACATTCTCGAAGCGGAAGGAGTTATCCTTCTCGTGTACG
TTGACGACATCCTGCTGTCGGGGAAGGACGAGGAGAAGGTCATGATGGTC
GTTGATCTGCTGAAGGAACGGTTCAACACGGTGTTCTTGGGGGATGCTCA
GCACCTGCTTGGTATGAAGCTTGAGAGGAACGTCGACGCCGGTACCATAT
TCCTTTCTCAAGAGACGTACGCAAAGACCGTGCTCGACCAGTTCGGAATG
GCCGAATCGCGCCCGGTGAAGACACCTGCGGAACCTGGACCTATCAGCAC
CGAGGAGGAGAAGGTTTTATCTCCATCGGAATCACATACACCGAAGACGC
CGACGGCGGAGATAAACTCACGGCGCACGTGGACTCTGCTTTTGCAGGAC
AAAGGCTACTCCACAACCGGTGCCGTTCTCTATCTCGCAGGTGCCCCAGT
GGACTGGATATCCAAGAAGCAAACGGTGCTGGCCATCTCAACGTTCGAGG
CTGAAGCCGTTGCCCTGTCCAAGGCGTGCACTATTGTCATCCACTTTCGT
AATTTGCTGAAGTCGCTGAACATGAAGCAGGAGCAGCCCACGGTAGTGTT
TGAGGACAACACAGGCACTGTAGCGTTTGCTAAGGGCGCCAAACTCACGC
CCCGTAGTAAACATATCGACGTCAAGTATCACCACGTTCGGTACTTAGAG
GAGAAGAAAATCGTCGACGTCAAGTACATCGAGACTAACTTGCAGAAGGC
TGACATCCTGACTAAAAGCCAGGGAGCTGTGAAGTTCCTCCAGAACCGCC
TTCTCTTGCTTGGAGTGTAA
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