Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 6334.EFV48939 |
| ProteomeId | EsuBft1041_9 |
| Protein domains | SSF56672 |
| Protein domains | Coil |
| Protein domains | IPR013103 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | copia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation] |
| Nb exon | 4 |
| Max annot lvl | 33208|Metazoa |
| Length | 2196 |
| Hectar predicted targeting category | other localisation |
| Evalue | 8.9e-72 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,40FC4@6231|Nematoda |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | Reverse transcriptase (RNA-dependent DNA polymerase) |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003824 |
| GO | 0005488 |
| GO | 0090304 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1041_9a-0001 ID=EsuBft1041_9a-0001|Name=EsuBft1041_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2196bp|location=Sequence derived from alignment at Scaffold_170:262090..264516+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGGGGCGCCTGCGGCACCCAGAAATGGGATGCAGGGGGACGAAGGCGG
AGGTCCCCCGTCGCCCTCTTCGGGAGGGGGTGACTTGGGCTGTGGCGATG
ACCCCGCCGACAACAGCAGCAACAGCAACGACAGTAGTGGCCCCAGCGAC
GTCTCCAACAACCACGACGGAGGCGGCAGCGAGCCACTCAGCGGCGACTC
TGGTGATGAGAGCAGCGGCGGGAGCGAGCCCGTCAGCAGCACATCTAGCC
ACGACGGCAGCAACGACGACGGTGACGGCAGCGAGGCTGTCGACCCCGGC
AGCGATGACGATGGCGGCGGCGAGACAGGCGACTCCGGTGAGAACGATGG
TGACGGCAATGAAGGCGGCGACCCTGAGACGCTCGAGGAGTTGAAGGAAG
AAACTTCTTTGGGGAGCGTCCAGCGCCGGCCAGCTGCGCCATGTGCTCCA
GCCGGCCGCACCCGGAAGCAGACCCGGGAGTTGCGGAGCTCCGAGGAAGA
GCCGAGCGAGGCGCCAGCCCCCGAGGAGGCGCCGTTATCAACCGTCCTGG
AGACTGATAACGGTCCGCAGATCGTTGCGGAATATATCCGCGAATCGCTG
TCGGAGGAGCGCATGCAAGACGAGCAAGCGCATCTTGAGGAGCTGAAGAA
GCAGTTACAGTACGATCTAGTGAAGGCGCTCCATCCTGATGCAGGGGAGC
TGGAGTTGGCATTCAGTGCAAACGAAACGGACGACGGGTCTCCGCAACCA
CTCCTTGACCCAGAGGTAAGTATTCCCTCGCCGATCGGGCAGAAGCCTAA
CGATGTAGAGGCTGTCCCGCTCACATACAAAGATGCGATGGATTCCAAGT
ACAAGGTGCTTTGGGAAGCGGCGATGATGAAAGAAAAGGGTGGTCTAGAC
AAGGCGGGGACTTTCACGAAAATTGGAAAACTTCCCGAGGGGCGGAAGGC
AGTGAGTTCGAAGTGGGTGTTTTCGTACAAGACGAACGAGAAGGGTATGA
TCACCGCCTTCCAAGCCCGTATGGTTGCGCGTGGTTTCTCACAGATTCCG
GGGGTAGATTTCCACCACTCAGCTTCTGCATACCCGTCTACGACGTCCAT
CAAAACCGTGGTTGTCGTAGCCACCGAGAAGAAAAAGAAGATGTTCCACT
GGGACATTAAACAAGCGTACATTCACGCTAAGCTCAAAGAAGAGGTTTTT
GTCAGACTCCCCCAGGGTTGTGGTGACATGTCTGGCAAGGTGTACAAGTG
CAGGGCTGACCCGTGTGTTTTCCGTAGGATGGTTGACGGAGAGGTCCTAG
GTCTGATCGTGATCTACGTAGACGACATTTTGTTGGTGGCGTCCGAGCAA
GAGCGTCAAGAGTTGCTTGCTTCCCTCCAGAAGAAGCTTCCGGTGAAGGA
TTTGGGAGAATGCACGTGGTATGTTGGGATTGGCATTGAGATGGACCTAG
AGAACGGCATCACCAAGTTGGCCCAGACGGCATACATCGAGAGCATCATC
AAACGGCATNACGAGCCCACGGTGGACAAGCCAGTGAGGGAGGCACTCGG
GTGCCTGATGTGGGTGGTGCATACGAGGCCGGACATCGCTCTGCCGTTGA
ACAAGATCCAGAAGGTGGCTCACTCTCCCACCGACAGGATATGGCAGGCG
CTTCTGAGGGTCATGTCTTACCTCAACGCCACGAAGGACCTGAGCCTCAC
CTATGCGCGGGGGTCAGGGCTACATCTAGGAGTGTGGGTCGATGCCAGCT
ACGCCGACGACGTTGTTGAGAGGCGTTCGACGACGGGACTAGCCGTAACC
GTAGGTGGTAACACGGTGAACGGAACCACAAAGACGCAGCGTGTGCCGGC
GCAGTCATCCTCGGAGGCAGAGTATCTAGCAGCCGGGGAGGGAGTGAAGG
AGGCGTTGCATGTGCGTGCGGTTCTGTCTTTCGTAGCGCCTGAGACGAGT
GGGGCGAAGATCAAGGTCCTTGTAGACAACAAGGGAGCTCTTGCCCTGGT
GCAGAACCCCTTCAGCTCGGCGAGGAGCAAGCACATCGACGTGCGGTACC
ACTTTATCTGCGAGCTCTTCAAGTCGGGGAAGATCACCGCAGACTATGTC
CCAACGGAAGAGCAGCACGCCGACATGCTGACCAAGGTCCTTGGTAGGAC
CAGACTGGAGTACCACCGGAAGGCCCTGATGAACCTCCCGAAGTAG back to topprotein sequence of EsuBft1041_9a-0001 >EsuBft1041_9 ID=EsuBft1041_9|Name=EsuBft1041_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=731bp
MGAPAAPRNGMQGDEGGGPPSPSSGGGDLGCGDDPADNSSNSNDSSGPSD
VSNNHDGGGSEPLSGDSGDESSGGSEPVSSTSSHDGSNDDGDGSEAVDPG
SDDDGGGETGDSGENDGDGNEGGDPETLEELKEETSLGSVQRRPAAPCAP
AGRTRKQTRELRSSEEEPSEAPAPEEAPLSTVLETDNGPQIVAEYIRESL
SEERMQDEQAHLEELKKQLQYDLVKALHPDAGELELAFSANETDDGSPQP
LLDPEVSIPSPIGQKPNDVEAVPLTYKDAMDSKYKVLWEAAMMKEKGGLD
KAGTFTKIGKLPEGRKAVSSKWVFSYKTNEKGMITAFQARMVARGFSQIP
GVDFHHSASAYPSTTSIKTVVVVATEKKKKMFHWDIKQAYIHAKLKEEVF
VRLPQGCGDMSGKVYKCRADPCVFRRMVDGEVLGLIVIYVDDILLVASEQ
ERQELLASLQKKLPVKDLGECTWYVGIGIEMDLENGITKLAQTAYIESII
KRHXEPTVDKPVREALGCLMWVVHTRPDIALPLNKIQKVAHSPTDRIWQA
LLRVMSYLNATKDLSLTYARGSGLHLGVWVDASYADDVVERRSTTGLAVT
VGGNTVNGTTKTQRVPAQSSSEAEYLAAGEGVKEALHVRAVLSFVAPETS
GAKIKVLVDNKGALALVQNPFSSARSKHIDVRYHFICELFKSGKITADYV
PTEEQHADMLTKVLGRTRLEYHRKALMNLPK back to topmRNA from alignment at Scaffold_170:262090..264516+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1041_9a-0001 ID=EsuBft1041_9a-0001|Name=EsuBft1041_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2427bp|location=Sequence derived from alignment at Scaffold_170:262090..264516+ (Ectocarpus subulatus male Bft15b)
ATGGGGGCGCCTGCGGCACCCAGAAATGGGATGCAGGGGGACGAAGGCGG
AGGTCCCCCGTCGCCCTCTTCGGGAGGGGGTGACTTGGGCTGTGGCGATG
ACCCCGCCGACAACAGCAGCAACAGCAACGACAGTAGTGGCCCCAGCGAC
GTCTCCAACAACCACGACGGAGGCGGCAGCGAGCCACTCAGCGGCGACTC
TGGTGATGAGAGCAGCGGCGGGAGCGAGCCCGTCAGCAGCACATCTAGCC
ACGACGGCAGCAACGACGACGGTGACGGCAGCGAGGCTGTCGACCCCGGC
AGCGATGACGATGGCGGCGGCGAGACAGGCGACTCCGGTGAGAACGATGG
TGACGGCAATGAAGGCGGCGACCCTGAGACGCTCGAGGAGTTGAAGTACG
ACCCCGCCGACAGCCACTACCCGTCAGGAACGGAAGGGAAGAAACTTCTT
TGGGGAGCGTCCAGCGCCGGCCAGCTGCGCCATGTGCTCCAGCCGGCCGC
ACCCGGAAGCAGACCCGGGAGTTGCGGAGCTCCGAGGAAGAGCCGAGCGA
GGCGCCAGCCCCCGAGGAGGCGCCGTTATCAACCGTCCTGGAGACTGATA
ACGGTCCGCAGATCGTTGCGGAATATATCCGCGAATCGCTGTCGGAGGAG
CGCATGCAAGACGAGCAAGCGCATCTTGAGGAGCTGAAGAAGCAGTTACA
GTACGATCTAGTGAAGGCGCTCCATCCTGATGCAGGGGAGCTGGAGTTGG
CATTCAGTGCAAACGAAACGGACGACGGGTCTCCGCAACCACTCCTTGAC
CCAGAGGTAAGTATTCCCTCGCCGATCGGGCAGAAGCCTAACGATGTAGA
GGCTGTCCCGCTCACATACAAAGATGCGATGGATTCCAAGTACAAGGTGC
TTTGGGAAGCGGCGATGATGAAAGAAAAGGGTGGTCTAGACAAGGCGGGG
ACTTTCACGAAAATTGGAAAACTTCCCGAGGGGCGGAAGGCAGTGAGTTC
GAAGTGGGTGTTTTCGTACAAGACGAACGAGAAGGGTATGATCACCGCCT
TCCAAGCCCGTATGGTTGCGCGTGGTTTCTCACAGATTCCGGGGGTAGAT
TTCCACCACTCAGCTTCTGCATACCCGTCTACGACGTCCATCAAAACCGT
GGTTGTCGTAGCCACCGAGAAGAAAAAGAAGATGTTCCACTGGGACATTA
AACAAGCGTACATTCACGCTAAGCTCAAAGAAGAGGTTTTTGTCAGACTC
CCCCAGGGTTGTGGTGACATGTCTGGCAAGGTGTACAAGGTTTAGCGTGC
ACTGTATGGCCTGAAACAAAGCGGTCGCGAATGTGGGTTTGAAGCTGCTG
ATTCCCTCATCGCGAATGGGTACGAGCAGTGCAGGGCTGACCCGTGTGTT
TTCCGTAGGATGGTTGACGGAGAGGTCCTAGGTCTGATCGTGATCTACGT
AGACGACATTTTGTTGGTGGCGTCCGAGCAAGAGCGTCAAGAGTTGCTTG
CTTCCCTCCAGAAGAAGCTTCCGGTGAAGGATTTGGGAGAATGCACGTGG
TATGTTGGGATTGGCATTGAGATGGACCTAGAGAACGGCATCACCAAGTT
GGCCCAGACGGCATACATCGAGAGCATCATCAAACGGTTAAACGTGACTA
CTACCACCCCCACGCCTGCTGTCCCCGGCGCTGACCTAGGACCGAAACGA
GATGACGAGCCCACGGTGGACAATCCAGTGAGGGAGGCATNACGAGCCCA
CGGTGGACAAGCCAGTGAGGGAGGCACTCGGGTGCCTGATGTGGGTGGTG
CATACGAGGCCGGACATCGCTCTGCCGTTGAACAAGATCCAGAAGGTGGC
TCACTCTCCCACCGACAGGATATGGCAGGCGCTTCTGAGGGTCATGTCTT
ACCTCAACGCCACGAAGGACCTGAGCCTCACCTATGCGCGGGGGTCAGGG
CTACATCTAGGAGTGTGGGTCGATGCCAGCTACGCCGACGACGTTGTTGA
GAGGCGTTCGACGACGGGACTAGCCGTAACCGTAGGTGGTAACACGGTGA
ACGGAACCACAAAGACGCAGCGTGTGCCGGCGCAGTCATCCTCGGAGGCA
GAGTATCTAGCAGCCGGGGAGGGAGTGAAGGAGGCGTTGCATGTGCGTGC
GGTTCTGTCTTTCGTAGCGCCTGAGACGAGTGGGGCGAAGATCAAGGTCC
TTGTAGACAACAAGGGAGCTCTTGCCCTGGTGCAGAACCCCTTCAGCTCG
GCGAGGAGCAAGCACATCGACGTGCGGTACCACTTTATCTGCGAGCTCTT
CAAGTCGGGGAAGATCACCGCAGACTATGTCCCAACGGAAGAGCAGCACG
CCGACATGCTGACCAAGGTCCTTGGTAGGACCAGACTGGAGTACCACCGG
AAGGCCCTGATGAACCTCCCGAAGTAG back to topCoding sequence (CDS) from alignment at Scaffold_170:262090..264516+ >EsuBft1041_9a-0001 ID=EsuBft1041_9a-0001|Name=EsuBft1041_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2196bp|location=Sequence derived from alignment at Scaffold_170:262090..264516+ (Ectocarpus subulatus male Bft15b)
ATGGGGGCGCCTGCGGCACCCAGAAATGGGATGCAGGGGGACGAAGGCGG
AGGTCCCCCGTCGCCCTCTTCGGGAGGGGGTGACTTGGGCTGTGGCGATG
ACCCCGCCGACAACAGCAGCAACAGCAACGACAGTAGTGGCCCCAGCGAC
GTCTCCAACAACCACGACGGAGGCGGCAGCGAGCCACTCAGCGGCGACTC
TGGTGATGAGAGCAGCGGCGGGAGCGAGCCCGTCAGCAGCACATCTAGCC
ACGACGGCAGCAACGACGACGGTGACGGCAGCGAGGCTGTCGACCCCGGC
AGCGATGACGATGGCGGCGGCGAGACAGGCGACTCCGGTGAGAACGATGG
TGACGGCAATGAAGGCGGCGACCCTGAGACGCTCGAGGAGTTGAAGGAAG
AAACTTCTTTGGGGAGCGTCCAGCGCCGGCCAGCTGCGCCATGTGCTCCA
GCCGGCCGCACCCGGAAGCAGACCCGGGAGTTGCGGAGCTCCGAGGAAGA
GCCGAGCGAGGCGCCAGCCCCCGAGGAGGCGCCGTTATCAACCGTCCTGG
AGACTGATAACGGTCCGCAGATCGTTGCGGAATATATCCGCGAATCGCTG
TCGGAGGAGCGCATGCAAGACGAGCAAGCGCATCTTGAGGAGCTGAAGAA
GCAGTTACAGTACGATCTAGTGAAGGCGCTCCATCCTGATGCAGGGGAGC
TGGAGTTGGCATTCAGTGCAAACGAAACGGACGACGGGTCTCCGCAACCA
CTCCTTGACCCAGAGGTAAGTATTCCCTCGCCGATCGGGCAGAAGCCTAA
CGATGTAGAGGCTGTCCCGCTCACATACAAAGATGCGATGGATTCCAAGT
ACAAGGTGCTTTGGGAAGCGGCGATGATGAAAGAAAAGGGTGGTCTAGAC
AAGGCGGGGACTTTCACGAAAATTGGAAAACTTCCCGAGGGGCGGAAGGC
AGTGAGTTCGAAGTGGGTGTTTTCGTACAAGACGAACGAGAAGGGTATGA
TCACCGCCTTCCAAGCCCGTATGGTTGCGCGTGGTTTCTCACAGATTCCG
GGGGTAGATTTCCACCACTCAGCTTCTGCATACCCGTCTACGACGTCCAT
CAAAACCGTGGTTGTCGTAGCCACCGAGAAGAAAAAGAAGATGTTCCACT
GGGACATTAAACAAGCGTACATTCACGCTAAGCTCAAAGAAGAGGTTTTT
GTCAGACTCCCCCAGGGTTGTGGTGACATGTCTGGCAAGGTGTACAAGTG
CAGGGCTGACCCGTGTGTTTTCCGTAGGATGGTTGACGGAGAGGTCCTAG
GTCTGATCGTGATCTACGTAGACGACATTTTGTTGGTGGCGTCCGAGCAA
GAGCGTCAAGAGTTGCTTGCTTCCCTCCAGAAGAAGCTTCCGGTGAAGGA
TTTGGGAGAATGCACGTGGTATGTTGGGATTGGCATTGAGATGGACCTAG
AGAACGGCATCACCAAGTTGGCCCAGACGGCATACATCGAGAGCATCATC
AAACGGCATNACGAGCCCACGGTGGACAAGCCAGTGAGGGAGGCACTCGG
GTGCCTGATGTGGGTGGTGCATACGAGGCCGGACATCGCTCTGCCGTTGA
ACAAGATCCAGAAGGTGGCTCACTCTCCCACCGACAGGATATGGCAGGCG
CTTCTGAGGGTCATGTCTTACCTCAACGCCACGAAGGACCTGAGCCTCAC
CTATGCGCGGGGGTCAGGGCTACATCTAGGAGTGTGGGTCGATGCCAGCT
ACGCCGACGACGTTGTTGAGAGGCGTTCGACGACGGGACTAGCCGTAACC
GTAGGTGGTAACACGGTGAACGGAACCACAAAGACGCAGCGTGTGCCGGC
GCAGTCATCCTCGGAGGCAGAGTATCTAGCAGCCGGGGAGGGAGTGAAGG
AGGCGTTGCATGTGCGTGCGGTTCTGTCTTTCGTAGCGCCTGAGACGAGT
GGGGCGAAGATCAAGGTCCTTGTAGACAACAAGGGAGCTCTTGCCCTGGT
GCAGAACCCCTTCAGCTCGGCGAGGAGCAAGCACATCGACGTGCGGTACC
ACTTTATCTGCGAGCTCTTCAAGTCGGGGAAGATCACCGCAGACTATGTC
CCAACGGAAGAGCAGCACGCCGACATGCTGACCAAGGTCCTTGGTAGGAC
CAGACTGGAGTACCACCGGAAGGCCCTGATGAACCTCCCGAAGTAG back to top
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