EsuBft1041_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1041_9a-0001
Unique NameEsuBft1041_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_170contigScaffold_170:262090..264516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6334.EFV48939
ProteomeIdEsuBft1041_9
Protein domainsSSF56672
Protein domainsCoil
Protein domainsIPR013103
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Notecopia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon4
Max annot lvl33208|Metazoa
Length2196
Hectar predicted targeting categoryother localisation
Evalue8.9e-72
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,40FC4@6231|Nematoda
Date last modified2016-06-13
Date creation2016-06-13
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
GO0005488
GO0090304
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1041_9aEsuBft1041_9aEctocarpus subulatus male Bft15bgeneScaffold_170 262090..264516 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1041_9a-0001-exonagat-exon-68472Ectocarpus subulatus male Bft15bexonScaffold_170 262090..262484 +
EsuBft1041_9a-0001-exonagat-exon-68474Ectocarpus subulatus male Bft15bexonScaffold_170 262526..263378 +
EsuBft1041_9a-0001-exonEsuBft1041_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_170 263469..263725 +
EsuBft1041_9a-0001-exonagat-exon-68473Ectocarpus subulatus male Bft15bexonScaffold_170 263826..264516 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1041_9a-0001-cdsEsuBft1041_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_170 262090..262484 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1041_9a-0001EsuBft1041_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_170 262090..264516 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1041_9a-0001 ID=EsuBft1041_9a-0001|Name=EsuBft1041_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2196bp|location=Sequence derived from alignment at Scaffold_170:262090..264516+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGCGCCTGCGGCACCCAGAAATGGGATGCAGGGGGACGAAGGCGG
AGGTCCCCCGTCGCCCTCTTCGGGAGGGGGTGACTTGGGCTGTGGCGATG
ACCCCGCCGACAACAGCAGCAACAGCAACGACAGTAGTGGCCCCAGCGAC
GTCTCCAACAACCACGACGGAGGCGGCAGCGAGCCACTCAGCGGCGACTC
TGGTGATGAGAGCAGCGGCGGGAGCGAGCCCGTCAGCAGCACATCTAGCC
ACGACGGCAGCAACGACGACGGTGACGGCAGCGAGGCTGTCGACCCCGGC
AGCGATGACGATGGCGGCGGCGAGACAGGCGACTCCGGTGAGAACGATGG
TGACGGCAATGAAGGCGGCGACCCTGAGACGCTCGAGGAGTTGAAGGAAG
AAACTTCTTTGGGGAGCGTCCAGCGCCGGCCAGCTGCGCCATGTGCTCCA
GCCGGCCGCACCCGGAAGCAGACCCGGGAGTTGCGGAGCTCCGAGGAAGA
GCCGAGCGAGGCGCCAGCCCCCGAGGAGGCGCCGTTATCAACCGTCCTGG
AGACTGATAACGGTCCGCAGATCGTTGCGGAATATATCCGCGAATCGCTG
TCGGAGGAGCGCATGCAAGACGAGCAAGCGCATCTTGAGGAGCTGAAGAA
GCAGTTACAGTACGATCTAGTGAAGGCGCTCCATCCTGATGCAGGGGAGC
TGGAGTTGGCATTCAGTGCAAACGAAACGGACGACGGGTCTCCGCAACCA
CTCCTTGACCCAGAGGTAAGTATTCCCTCGCCGATCGGGCAGAAGCCTAA
CGATGTAGAGGCTGTCCCGCTCACATACAAAGATGCGATGGATTCCAAGT
ACAAGGTGCTTTGGGAAGCGGCGATGATGAAAGAAAAGGGTGGTCTAGAC
AAGGCGGGGACTTTCACGAAAATTGGAAAACTTCCCGAGGGGCGGAAGGC
AGTGAGTTCGAAGTGGGTGTTTTCGTACAAGACGAACGAGAAGGGTATGA
TCACCGCCTTCCAAGCCCGTATGGTTGCGCGTGGTTTCTCACAGATTCCG
GGGGTAGATTTCCACCACTCAGCTTCTGCATACCCGTCTACGACGTCCAT
CAAAACCGTGGTTGTCGTAGCCACCGAGAAGAAAAAGAAGATGTTCCACT
GGGACATTAAACAAGCGTACATTCACGCTAAGCTCAAAGAAGAGGTTTTT
GTCAGACTCCCCCAGGGTTGTGGTGACATGTCTGGCAAGGTGTACAAGTG
CAGGGCTGACCCGTGTGTTTTCCGTAGGATGGTTGACGGAGAGGTCCTAG
GTCTGATCGTGATCTACGTAGACGACATTTTGTTGGTGGCGTCCGAGCAA
GAGCGTCAAGAGTTGCTTGCTTCCCTCCAGAAGAAGCTTCCGGTGAAGGA
TTTGGGAGAATGCACGTGGTATGTTGGGATTGGCATTGAGATGGACCTAG
AGAACGGCATCACCAAGTTGGCCCAGACGGCATACATCGAGAGCATCATC
AAACGGCATNACGAGCCCACGGTGGACAAGCCAGTGAGGGAGGCACTCGG
GTGCCTGATGTGGGTGGTGCATACGAGGCCGGACATCGCTCTGCCGTTGA
ACAAGATCCAGAAGGTGGCTCACTCTCCCACCGACAGGATATGGCAGGCG
CTTCTGAGGGTCATGTCTTACCTCAACGCCACGAAGGACCTGAGCCTCAC
CTATGCGCGGGGGTCAGGGCTACATCTAGGAGTGTGGGTCGATGCCAGCT
ACGCCGACGACGTTGTTGAGAGGCGTTCGACGACGGGACTAGCCGTAACC
GTAGGTGGTAACACGGTGAACGGAACCACAAAGACGCAGCGTGTGCCGGC
GCAGTCATCCTCGGAGGCAGAGTATCTAGCAGCCGGGGAGGGAGTGAAGG
AGGCGTTGCATGTGCGTGCGGTTCTGTCTTTCGTAGCGCCTGAGACGAGT
GGGGCGAAGATCAAGGTCCTTGTAGACAACAAGGGAGCTCTTGCCCTGGT
GCAGAACCCCTTCAGCTCGGCGAGGAGCAAGCACATCGACGTGCGGTACC
ACTTTATCTGCGAGCTCTTCAAGTCGGGGAAGATCACCGCAGACTATGTC
CCAACGGAAGAGCAGCACGCCGACATGCTGACCAAGGTCCTTGGTAGGAC
CAGACTGGAGTACCACCGGAAGGCCCTGATGAACCTCCCGAAGTAG
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protein sequence of EsuBft1041_9a-0001

>EsuBft1041_9 ID=EsuBft1041_9|Name=EsuBft1041_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=731bp
MGAPAAPRNGMQGDEGGGPPSPSSGGGDLGCGDDPADNSSNSNDSSGPSD
VSNNHDGGGSEPLSGDSGDESSGGSEPVSSTSSHDGSNDDGDGSEAVDPG
SDDDGGGETGDSGENDGDGNEGGDPETLEELKEETSLGSVQRRPAAPCAP
AGRTRKQTRELRSSEEEPSEAPAPEEAPLSTVLETDNGPQIVAEYIRESL
SEERMQDEQAHLEELKKQLQYDLVKALHPDAGELELAFSANETDDGSPQP
LLDPEVSIPSPIGQKPNDVEAVPLTYKDAMDSKYKVLWEAAMMKEKGGLD
KAGTFTKIGKLPEGRKAVSSKWVFSYKTNEKGMITAFQARMVARGFSQIP
GVDFHHSASAYPSTTSIKTVVVVATEKKKKMFHWDIKQAYIHAKLKEEVF
VRLPQGCGDMSGKVYKCRADPCVFRRMVDGEVLGLIVIYVDDILLVASEQ
ERQELLASLQKKLPVKDLGECTWYVGIGIEMDLENGITKLAQTAYIESII
KRHXEPTVDKPVREALGCLMWVVHTRPDIALPLNKIQKVAHSPTDRIWQA
LLRVMSYLNATKDLSLTYARGSGLHLGVWVDASYADDVVERRSTTGLAVT
VGGNTVNGTTKTQRVPAQSSSEAEYLAAGEGVKEALHVRAVLSFVAPETS
GAKIKVLVDNKGALALVQNPFSSARSKHIDVRYHFICELFKSGKITADYV
PTEEQHADMLTKVLGRTRLEYHRKALMNLPK
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mRNA from alignment at Scaffold_170:262090..264516+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1041_9a-0001 ID=EsuBft1041_9a-0001|Name=EsuBft1041_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2427bp|location=Sequence derived from alignment at Scaffold_170:262090..264516+ (Ectocarpus subulatus male Bft15b)
ATGGGGGCGCCTGCGGCACCCAGAAATGGGATGCAGGGGGACGAAGGCGG
AGGTCCCCCGTCGCCCTCTTCGGGAGGGGGTGACTTGGGCTGTGGCGATG
ACCCCGCCGACAACAGCAGCAACAGCAACGACAGTAGTGGCCCCAGCGAC
GTCTCCAACAACCACGACGGAGGCGGCAGCGAGCCACTCAGCGGCGACTC
TGGTGATGAGAGCAGCGGCGGGAGCGAGCCCGTCAGCAGCACATCTAGCC
ACGACGGCAGCAACGACGACGGTGACGGCAGCGAGGCTGTCGACCCCGGC
AGCGATGACGATGGCGGCGGCGAGACAGGCGACTCCGGTGAGAACGATGG
TGACGGCAATGAAGGCGGCGACCCTGAGACGCTCGAGGAGTTGAAGTACG
ACCCCGCCGACAGCCACTACCCGTCAGGAACGGAAGGGAAGAAACTTCTT
TGGGGAGCGTCCAGCGCCGGCCAGCTGCGCCATGTGCTCCAGCCGGCCGC
ACCCGGAAGCAGACCCGGGAGTTGCGGAGCTCCGAGGAAGAGCCGAGCGA
GGCGCCAGCCCCCGAGGAGGCGCCGTTATCAACCGTCCTGGAGACTGATA
ACGGTCCGCAGATCGTTGCGGAATATATCCGCGAATCGCTGTCGGAGGAG
CGCATGCAAGACGAGCAAGCGCATCTTGAGGAGCTGAAGAAGCAGTTACA
GTACGATCTAGTGAAGGCGCTCCATCCTGATGCAGGGGAGCTGGAGTTGG
CATTCAGTGCAAACGAAACGGACGACGGGTCTCCGCAACCACTCCTTGAC
CCAGAGGTAAGTATTCCCTCGCCGATCGGGCAGAAGCCTAACGATGTAGA
GGCTGTCCCGCTCACATACAAAGATGCGATGGATTCCAAGTACAAGGTGC
TTTGGGAAGCGGCGATGATGAAAGAAAAGGGTGGTCTAGACAAGGCGGGG
ACTTTCACGAAAATTGGAAAACTTCCCGAGGGGCGGAAGGCAGTGAGTTC
GAAGTGGGTGTTTTCGTACAAGACGAACGAGAAGGGTATGATCACCGCCT
TCCAAGCCCGTATGGTTGCGCGTGGTTTCTCACAGATTCCGGGGGTAGAT
TTCCACCACTCAGCTTCTGCATACCCGTCTACGACGTCCATCAAAACCGT
GGTTGTCGTAGCCACCGAGAAGAAAAAGAAGATGTTCCACTGGGACATTA
AACAAGCGTACATTCACGCTAAGCTCAAAGAAGAGGTTTTTGTCAGACTC
CCCCAGGGTTGTGGTGACATGTCTGGCAAGGTGTACAAGGTTTAGCGTGC
ACTGTATGGCCTGAAACAAAGCGGTCGCGAATGTGGGTTTGAAGCTGCTG
ATTCCCTCATCGCGAATGGGTACGAGCAGTGCAGGGCTGACCCGTGTGTT
TTCCGTAGGATGGTTGACGGAGAGGTCCTAGGTCTGATCGTGATCTACGT
AGACGACATTTTGTTGGTGGCGTCCGAGCAAGAGCGTCAAGAGTTGCTTG
CTTCCCTCCAGAAGAAGCTTCCGGTGAAGGATTTGGGAGAATGCACGTGG
TATGTTGGGATTGGCATTGAGATGGACCTAGAGAACGGCATCACCAAGTT
GGCCCAGACGGCATACATCGAGAGCATCATCAAACGGTTAAACGTGACTA
CTACCACCCCCACGCCTGCTGTCCCCGGCGCTGACCTAGGACCGAAACGA
GATGACGAGCCCACGGTGGACAATCCAGTGAGGGAGGCATNACGAGCCCA
CGGTGGACAAGCCAGTGAGGGAGGCACTCGGGTGCCTGATGTGGGTGGTG
CATACGAGGCCGGACATCGCTCTGCCGTTGAACAAGATCCAGAAGGTGGC
TCACTCTCCCACCGACAGGATATGGCAGGCGCTTCTGAGGGTCATGTCTT
ACCTCAACGCCACGAAGGACCTGAGCCTCACCTATGCGCGGGGGTCAGGG
CTACATCTAGGAGTGTGGGTCGATGCCAGCTACGCCGACGACGTTGTTGA
GAGGCGTTCGACGACGGGACTAGCCGTAACCGTAGGTGGTAACACGGTGA
ACGGAACCACAAAGACGCAGCGTGTGCCGGCGCAGTCATCCTCGGAGGCA
GAGTATCTAGCAGCCGGGGAGGGAGTGAAGGAGGCGTTGCATGTGCGTGC
GGTTCTGTCTTTCGTAGCGCCTGAGACGAGTGGGGCGAAGATCAAGGTCC
TTGTAGACAACAAGGGAGCTCTTGCCCTGGTGCAGAACCCCTTCAGCTCG
GCGAGGAGCAAGCACATCGACGTGCGGTACCACTTTATCTGCGAGCTCTT
CAAGTCGGGGAAGATCACCGCAGACTATGTCCCAACGGAAGAGCAGCACG
CCGACATGCTGACCAAGGTCCTTGGTAGGACCAGACTGGAGTACCACCGG
AAGGCCCTGATGAACCTCCCGAAGTAG
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Coding sequence (CDS) from alignment at Scaffold_170:262090..264516+

>EsuBft1041_9a-0001 ID=EsuBft1041_9a-0001|Name=EsuBft1041_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2196bp|location=Sequence derived from alignment at Scaffold_170:262090..264516+ (Ectocarpus subulatus male Bft15b)
ATGGGGGCGCCTGCGGCACCCAGAAATGGGATGCAGGGGGACGAAGGCGG
AGGTCCCCCGTCGCCCTCTTCGGGAGGGGGTGACTTGGGCTGTGGCGATG
ACCCCGCCGACAACAGCAGCAACAGCAACGACAGTAGTGGCCCCAGCGAC
GTCTCCAACAACCACGACGGAGGCGGCAGCGAGCCACTCAGCGGCGACTC
TGGTGATGAGAGCAGCGGCGGGAGCGAGCCCGTCAGCAGCACATCTAGCC
ACGACGGCAGCAACGACGACGGTGACGGCAGCGAGGCTGTCGACCCCGGC
AGCGATGACGATGGCGGCGGCGAGACAGGCGACTCCGGTGAGAACGATGG
TGACGGCAATGAAGGCGGCGACCCTGAGACGCTCGAGGAGTTGAAGGAAG
AAACTTCTTTGGGGAGCGTCCAGCGCCGGCCAGCTGCGCCATGTGCTCCA
GCCGGCCGCACCCGGAAGCAGACCCGGGAGTTGCGGAGCTCCGAGGAAGA
GCCGAGCGAGGCGCCAGCCCCCGAGGAGGCGCCGTTATCAACCGTCCTGG
AGACTGATAACGGTCCGCAGATCGTTGCGGAATATATCCGCGAATCGCTG
TCGGAGGAGCGCATGCAAGACGAGCAAGCGCATCTTGAGGAGCTGAAGAA
GCAGTTACAGTACGATCTAGTGAAGGCGCTCCATCCTGATGCAGGGGAGC
TGGAGTTGGCATTCAGTGCAAACGAAACGGACGACGGGTCTCCGCAACCA
CTCCTTGACCCAGAGGTAAGTATTCCCTCGCCGATCGGGCAGAAGCCTAA
CGATGTAGAGGCTGTCCCGCTCACATACAAAGATGCGATGGATTCCAAGT
ACAAGGTGCTTTGGGAAGCGGCGATGATGAAAGAAAAGGGTGGTCTAGAC
AAGGCGGGGACTTTCACGAAAATTGGAAAACTTCCCGAGGGGCGGAAGGC
AGTGAGTTCGAAGTGGGTGTTTTCGTACAAGACGAACGAGAAGGGTATGA
TCACCGCCTTCCAAGCCCGTATGGTTGCGCGTGGTTTCTCACAGATTCCG
GGGGTAGATTTCCACCACTCAGCTTCTGCATACCCGTCTACGACGTCCAT
CAAAACCGTGGTTGTCGTAGCCACCGAGAAGAAAAAGAAGATGTTCCACT
GGGACATTAAACAAGCGTACATTCACGCTAAGCTCAAAGAAGAGGTTTTT
GTCAGACTCCCCCAGGGTTGTGGTGACATGTCTGGCAAGGTGTACAAGTG
CAGGGCTGACCCGTGTGTTTTCCGTAGGATGGTTGACGGAGAGGTCCTAG
GTCTGATCGTGATCTACGTAGACGACATTTTGTTGGTGGCGTCCGAGCAA
GAGCGTCAAGAGTTGCTTGCTTCCCTCCAGAAGAAGCTTCCGGTGAAGGA
TTTGGGAGAATGCACGTGGTATGTTGGGATTGGCATTGAGATGGACCTAG
AGAACGGCATCACCAAGTTGGCCCAGACGGCATACATCGAGAGCATCATC
AAACGGCATNACGAGCCCACGGTGGACAAGCCAGTGAGGGAGGCACTCGG
GTGCCTGATGTGGGTGGTGCATACGAGGCCGGACATCGCTCTGCCGTTGA
ACAAGATCCAGAAGGTGGCTCACTCTCCCACCGACAGGATATGGCAGGCG
CTTCTGAGGGTCATGTCTTACCTCAACGCCACGAAGGACCTGAGCCTCAC
CTATGCGCGGGGGTCAGGGCTACATCTAGGAGTGTGGGTCGATGCCAGCT
ACGCCGACGACGTTGTTGAGAGGCGTTCGACGACGGGACTAGCCGTAACC
GTAGGTGGTAACACGGTGAACGGAACCACAAAGACGCAGCGTGTGCCGGC
GCAGTCATCCTCGGAGGCAGAGTATCTAGCAGCCGGGGAGGGAGTGAAGG
AGGCGTTGCATGTGCGTGCGGTTCTGTCTTTCGTAGCGCCTGAGACGAGT
GGGGCGAAGATCAAGGTCCTTGTAGACAACAAGGGAGCTCTTGCCCTGGT
GCAGAACCCCTTCAGCTCGGCGAGGAGCAAGCACATCGACGTGCGGTACC
ACTTTATCTGCGAGCTCTTCAAGTCGGGGAAGATCACCGCAGACTATGTC
CCAACGGAAGAGCAGCACGCCGACATGCTGACCAAGGTCCTTGGTAGGAC
CAGACTGGAGTACCACCGGAAGGCCCTGATGAACCTCCCGAAGTAG
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