Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft1040_4 |
| Protein domains | PTHR32134 |
| Protein domains | SSF52058 |
| Protein domains | IPR008615 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | f-box and fnip repeat-containing protein l60 os:acanthamoeba polyphaga mimivirus gn:mimi [Automatic annotation] |
| Nb exon | 8 |
| Length | 2043 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1040_4a-0001 ID=EsuBft1040_4a-0001|Name=EsuBft1040_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2043bp|location=Sequence derived from alignment at Scaffold_420:46389..50675+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCGCAGGGCGCACGCGGGAATGATCGCGGCAGCCAAGCCTCTGGGGGG
AAAGGTGCGGGAACGCACAAGGGATGTTGCCGGTACTGTCATAACTCCAC
CGAGCATGGGTGAGGTGGCCGGCGATGAGCTTGAAGAATTCGCCATCGCT
TTCGGTGATGACGCCCAGGAGTTGAAGGCGCCTGCTGCGGCGCTGCCAGA
GGAGCGCGCTGTTGACGAGGACCCGGTTCAGGATACGCCCGTGGCACTGC
CGGATCGTCTCTTCATCTACGACCCGCAGGCACTACAGGTGCACAATGCT
CCTATGACGGCGCTGCCGGATGGCCTCGTCGTCTGCGACCCGCAAGCACT
GCAGGTGCCTGCTGCGGCGCTGCCCGAGGAGCGCGCTGCTGATGAGGACC
CGGTTCAGGATACGCCCGTGGCACTGCCGGATGGTTCCTTCATTTGTGAC
GCGCAGGCACTGCAGGCGGAGGATGCGTATGAGACTACCGAGATGGAAGG
GTACACCAGCGTGTTTCAGGTGGAGAAGAGGGGAGGTGACTACTCTCCTA
GAAGCGAGAGGCGGTTCCTAAGAAACTTCACCGCGCCCAAGCTCTTCGTT
AGCATGTCTGCCTTTTGGCAGTCAGTTCCGATCTTCTTCACGTCCACTAC
CTTGAACGAGNCGGTTCAGGATACGCCCGTGGCACTGCCGGATGGTTCCT
TCATTTGTGACGCGCAGGCACTGCAGGTACCTACTGCGGTACCACCAGCG
GAGGGTGTGTGGCTCGAGATCGACCAGCGGAGCGCCCGGCTGGAGATCAG
CAGGCGGAGGATGCGTATGAGACTACCGAGATGGAAGGTCGTTTTGGACG
AAATGGACCACTCCCCGGGTCGACCGGGCAATGACGGAGGGCAAACCCAG
GTTGCAAGTGCCGCCGCTTTTCCCGGTGGAGATGGCAGCCGATGTTTGGA
AGCCTCTGACGTGGCCATCAGCCATGCCAGCGACGACGAGACGTGGAACG
TGTCCACGCTGCACTTGGTGCACGAGGACGCGCCGGCTCGCCTCTGGGCT
AGTGGCACCACCGATGAGGCCACAGGGAGCAGTGGCAAGAGGATGAAATC
GGCGCGAGTGCCGGGCTTCCGACCGAGCAAGGTGACGTGGGAGCTGCCCG
CTTCGTCGCTGAACTGTACCGGAGACGTGTTCGCTAGAGTGGCGCATCTG
AACTGTGGCGATTTTTTGAACGAAAACCTCGATAAGTTGGTGTGGCCACC
ATCGCTATGTCGGCTGACTTGTAGGTGGGACTTCGACCGCCAAGTTAACC
GCGTCAAATGGCCCAAGACCCTTCAACAGCTTGAATTCGGGTACGACTTC
AATCAGCCGATCGACAATGTTTCATGGGCAGTGTCACTCCTCGACCTGCC
GTTCGGGAATAGCTTTAACCGGCCGATTCACGGGGTCAAATGGCCGCCCT
CGCTGCGACGTCTCGCCTTTGGAGAGAAATGTAACCAGTCGATTGAAAGG
GTGTTGTGGTCAACGTCACTGCGAGAGCTTCCCTTCGGGCGTGATTTCAA
CCAGCCCATTGAAAGCATCTCGTGGGCATCATCGCTGGAACAGCTTACCT
TCTTCAAAAAAATATTGAGAGGCAGCAACTTCAACCAGCCAATTAACGTC
AAATGGCCACCGTCGCTGCTACGCCTCGTGTTTGGACACGTATTTAACCA
ACCGATCAAAATGGTATCGTGGCCAGCGTCACTGGGGGAGCTCACCTTCG
GACGCGAGTTCGACCAACCCATTGACAGTATCTCGTCGGCGTCATCGCTG
GAACAGCTCGTCTTCGTAAGCAGCCACTTCGATCAACCCATCGCCGGAGT
AGTGTGGCCGACCTCCCTCCAGAAGCTTTCGTTCGGGAAAGCGTTCAACC
AGTCCATCACCGGCGTAGTGTGGCCAGAATGCCTGGAGAATCTCTGGTTT
TGCGGCCGGAAAGTTCTTCCAGCGAGGGCGTGTTCTTCTATGATGGACGA
GGAAAACGTCTTTTCTGTAGGGTTTCACAGGGGAGAGGTTTAG back to topprotein sequence of EsuBft1040_4a-0001 >EsuBft1040_4 ID=EsuBft1040_4|Name=EsuBft1040_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=680bp
MRRAHAGMIAAAKPLGGKVRERTRDVAGTVITPPSMGEVAGDELEEFAIA
FGDDAQELKAPAAALPEERAVDEDPVQDTPVALPDRLFIYDPQALQVHNA
PMTALPDGLVVCDPQALQVPAAALPEERAADEDPVQDTPVALPDGSFICD
AQALQAEDAYETTEMEGYTSVFQVEKRGGDYSPRSERRFLRNFTAPKLFV
SMSAFWQSVPIFFTSTTLNEXVQDTPVALPDGSFICDAQALQVPTAVPPA
EGVWLEIDQRSARLEISRRRMRMRLPRWKVVLDEMDHSPGRPGNDGGQTQ
VASAAAFPGGDGSRCLEASDVAISHASDDETWNVSTLHLVHEDAPARLWA
SGTTDEATGSSGKRMKSARVPGFRPSKVTWELPASSLNCTGDVFARVAHL
NCGDFLNENLDKLVWPPSLCRLTCRWDFDRQVNRVKWPKTLQQLEFGYDF
NQPIDNVSWAVSLLDLPFGNSFNRPIHGVKWPPSLRRLAFGEKCNQSIER
VLWSTSLRELPFGRDFNQPIESISWASSLEQLTFFKKILRGSNFNQPINV
KWPPSLLRLVFGHVFNQPIKMVSWPASLGELTFGREFDQPIDSISSASSL
EQLVFVSSHFDQPIAGVVWPTSLQKLSFGKAFNQSITGVVWPECLENLWF
CGRKVLPARACSSMMDEENVFSVGFHRGEV back to topmRNA from alignment at Scaffold_420:46389..50675+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1040_4a-0001 ID=EsuBft1040_4a-0001|Name=EsuBft1040_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4287bp|location=Sequence derived from alignment at Scaffold_420:46389..50675+ (Ectocarpus subulatus male Bft15b)
ATGCGCAGGGCGCACGCGGGAATGATCGCGGCAGCCAAGCCTCTGGGGGG
AAAGGTGCGGGAACGCACAAGGGATGTTGCCGGTACTGTCATAACTCCAC
CGAGCATGGGTGGTACGACTGCCCGCTTCGCCTGAGGAACGAGGCTGAGG
ATGCCAAAGAAAAGGCGCACACCACAGAGGACTCCACCACGCAGGCATAG
TTCACGCGGGTAGAGGTGGCCGGCGATGAGCTTGAAGAATTCGCCATCGC
TTTCGGTGATGACGCCCAGGAGTTGAAGGCGCCTGCTGCGGCGCTGCCAG
AGGAGCGCGCTGTTGACGAGGACCCGGTTCAGGATACGCCCGTGGCACTG
CCGGATCGTCTCTTCATCTACGACCCGCAGGCACTACAGGTGCCTGCTGC
GGCACTGCCAGAGGATCGCGCGCTGAAGTCGAGCAGGTGCACAATGCTCC
TATGACGGCGCTGCCGGATGGCCTCGTCGTCTGCGACCCGCAAGCACTGC
AGGTGCCTGCTGCGGCGCTGCCCGAGGAGCGCGCTGCTGATGAGGACCCG
GTTCAGGATACGCCCGTGGCACTGCCGGATGGTTCCTTCATTTGTGACGC
GCAGGCACTGCAGGTACCTACTGCGGTACCACCAGCGGAGGGTGTGTGGC
TCGAGATCGACCAGCGGAGCGCCCGGCTGGAGATCAGCAGGCGGAGGATG
CGTATGAGACTACCGAGATGGAAGGGTACACCAGCGTGTTTCAGGTGGAG
AAGAGGGGAGGTGACTACTCTCCTAGAAGCGAGAGGCGGTTCCTAAGAAA
CTTCACCGCGCCCAAGCTCTTCGTTAGCATGTCTGCCTTTTGGCAGTCAG
TTCCGATCTTCTTCACGTCCACTACCTTGAACGAGNCGGTTCAGGATACG
CCCGTGGCACTGCCGGATGGTTCCTTCATTTGTGACGCGCAGGCACTGCA
GGTACCTACTGCGGTACCACCAGCGGAGGGTGTGTGGCTCGAGATCGACC
AGCGGAGCGCCCGGCTGGAGATCAGCAGGCGGAGGATGCGTATGAGACTA
CCGAGATGGAAGGGTACACCAGNCTAACGAAGAGCTTGGGCGCGGTGAAG
TTTCTCAGGAACCGCCTCTCGCTTCTAGGAGAGTAGTCACCTCCCCTCTT
CTCCACCTGAAACACGTTGGTGTACCCTACCAACTCGGTAGTCTCATACG
CATCCTCTGCGCCACGTGCCAACCACAGGGTACTGCAGCTGAGAGACCTC
GCTGGTACGTCTGTCATGCAGCAGCGGTCGAACGTGCAGTTGTGACGTAT
GTGCATACACGAAAGCAGCTGCAACTTGACGGACGTGCAGCTGTGAAAAC
TAACCATCACGCGCTCGACACATGCTGCTTGTCTGAGATCGGTGGATACA
AAAGGTAGGCGAGGGCACGGCTTGTGGTGTTTGATTCGACCCGTCCAACA
GCGAGAGCCTCGATTCTTCTCGGGAGGCCCTCTCTGTTATTTCCCAACCC
TCAGAGATGATAAAGCATTGGGACAACACACCACAGCTCTTCGTTTGTCG
GTCATTCTTCAATCAGGACCCAGGACCGATCTCCACGAGACACGACACAA
CCCACAGCATAGTTGTCGTTGCCGAATATAGTCTTCGCATAATCTAGTCT
AATGTAGCAACACAAACAAGGGGCCCTCCAAGTGGAAACCGTAGTACAAC
ACCCCCCCAACCAAACTTGATGCATGGACGCGAGGAGTATAGCCAATTTG
CACCGGCCGCTTGCAGCAGTCTACTGCTGTATGGGATTTAGTGTGTTCTA
TATATACTCTTCATTTTATATACGTAGGCTAAGTGTCGTACTCTGAAACC
CGATGAATACCGGGGTATATACGTTTACCACCCCCTCGCGGACGAGATTG
ACGTGTAGCCTGGGGGTTTTCCTTGGTTTCCACGGGGAGGGCCCCTTGAA
TAGACTCCACACATGAACCTATACGTCCAACGTACACGCGCATCATTCAT
GAAACGCACTGCCACGACATGTGCTCTAGTTGTACCCATTGCTGGCATGC
GGTCAACCAGGTCCTCATAAGCAACATGTTTGCTGTTCACCCCCACCTTG
TTCCCATTTGACGACGATGACGTGCTAGGCAATACTTCAGCAAGCGTGAG
ATACATCGTCTGAAGGACTCGGGTGCCTCTGCACGAGATCGCGCTTGCCG
TACAATCAAGACACCTTCCAAGGCATTGCTGCCTGAGAACAGTCGTTTTG
GACGAAATGGACCACTCCCCGGGTCGACCGGGCAATGACGGAGGGCAAAC
CCAGGTTGCAAGTGCCGCCGCTTTTCCCGGTGGAGGTATGTTCTGTAGCA
AATTGCCACACCTTCCTCTAGGTCACCACCCCCTACTTCGGTTGTGGGCG
TACAGTAGAGCTTTGCGGGGTGTATCGTACGCAACTTATATTGCAAGCAA
TTTGTAGAGCACACAGTTCCCTGGCGTGTAGAGTCAATAGCGGCTGTCCT
ACTGATTCAACGGGCAGAAGCAGTAGTTTTTGGCATACCTTGCCTGGCCA
CGCACCAATCGCCCTTGAAGCCAGACGACCTGTTTTACTGTTTAATGCGG
ATCTCGAGAATGGAATCAAGGAAGACGAAACACTCGTGAGTCTACCTCTG
AATAGAGTCCATCGAGAGGCGTCTTCTCGTAACCATTCGACGTTGATGGC
AGGTGTTGGGAGCGTGATACTCTTTCTTCGATTTCCGTACGCACCACTCG
GCAATTCTTTAGCATTGTAGGAATAATCCCTTATCATGGATGTTGTGCCT
CACACTGGACGCGAGTTTGGCGTGTTTCGGAGATTTAATTTCCGCCATAC
AAGGCTACGTCCCTGTCAGTGACGGCACTAGTGTAGCACGCAGCTCTAAG
ACAGGTTCGGCAACAAGAACTAGAAGAGTGTCCTCTTTGGCAACTTTGCG
AGTACTCGAGCTTCAAGTACCAGCCCTACCCCAATCCCCTGCCACAAGAT
CGATGCCACTTGGTTTTTCCACTTTTGCACGCAATGCCGTTGCACGGTCG
CAGATGGCAGCCGATGTTTGGAAGCCTCTGACGTGGCCATCAGCCATGCC
AGCGACGACGAGACGTGGTACACGTCGACGAACAACTCCAGCTCGCATCC
TTGCGGCTCTGCACGGCTTGCAGGAACGTGTCCACGCTGCACTTGGTGCA
CGAGGACGCGCCGGCTCGCCTCTGGGCTAGTGGCACCACCGATGAGGCCA
CAGGGAGCAGTGGCAAGAGGATGAAATCGGCGCGAGTGCCGGGCTTCCGA
CCGAGCAAGGTGACGTGGGAGCTGCCCGCTTCGTCGCTGAACTGTACCGG
AGACGTGTTCGCTAGAGTGGCGCATCTGAACTGTGGCGATTTTTTGAACG
AAAACCTCGATAAGTTGGTGTGGCCACCATCGCTATGTCGGCTGACTTGT
AGGTGGGACTTCGACCGCCAAGTTAACCGCGTCAAATGGCCCAAGACCCT
TCAACAGCTTGAATTCGGGTACGACTTCAATCAGCCGATCGACAATGTTT
CATGGGCAGTGTCACTCCTCGACCTGCCGTTCGGGAATAGCTTTAACCGG
CCGATTCACGGGGTCAAATGGCCGCCCTCGCTGCGACGTCTCGCCTTTGG
AGAGAAATGTAACCAGTCGATTGAAAGGGTGTTGTGGTCAACGTCACTGC
GAGAGCTTCCCTTCGGGCGTGATTTCAACCAGCCCATTGAAAGCATCTCG
TGGGCATCATCGCTGGAACAGCTTACCTTCTTCAAAAAAATATTGAGAGG
CAGCAACTTCAACCAGCCAATTAACGTCAAATGGCCACCGTCGCTGCTAC
GCCTCGTGTTTGGACACGTATTTAACCAACCGATCAAAATGGTATCGTGG
CCAGCGTCACTGGGGGAGCTCACCTTCGGACGCGAGTTCGACCAACCCAT
TGACAGTATCTCGTCGGCGTCATCGCTGGAACAGCTCGTCTTCGTAAGCA
GCCACTTCGATCAACCCATCGCCGGAGTAGTGTGGCCGACCTCCCTCCAG
AAGCTTTCGTTCGGGAAAGCGTTCAACCAGTCCATCACCGGCGTAGTGTG
ACCAAACTTGCTGCGACATCTCTATATGGGGAACTGTTTCGAGCAACCGA
TCGATGGCGTCAGGTGGCCAGAATGCCTGGAGAATCTCTGGTTTTGCGGC
CGGAAAGTTCTTCCAGCGAGGGCGTGTTCTTCTATGATGGACGAGGAAAA
CGTCTTTTCTGTAGGGTTTCACAGGGGAGAGGTTTAG back to topCoding sequence (CDS) from alignment at Scaffold_420:46389..50675+ >EsuBft1040_4a-0001 ID=EsuBft1040_4a-0001|Name=EsuBft1040_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2043bp|location=Sequence derived from alignment at Scaffold_420:46389..50675+ (Ectocarpus subulatus male Bft15b)
ATGCGCAGGGCGCACGCGGGAATGATCGCGGCAGCCAAGCCTCTGGGGGG
AAAGGTGCGGGAACGCACAAGGGATGTTGCCGGTACTGTCATAACTCCAC
CGAGCATGGGTGAGGTGGCCGGCGATGAGCTTGAAGAATTCGCCATCGCT
TTCGGTGATGACGCCCAGGAGTTGAAGGCGCCTGCTGCGGCGCTGCCAGA
GGAGCGCGCTGTTGACGAGGACCCGGTTCAGGATACGCCCGTGGCACTGC
CGGATCGTCTCTTCATCTACGACCCGCAGGCACTACAGGTGCACAATGCT
CCTATGACGGCGCTGCCGGATGGCCTCGTCGTCTGCGACCCGCAAGCACT
GCAGGTGCCTGCTGCGGCGCTGCCCGAGGAGCGCGCTGCTGATGAGGACC
CGGTTCAGGATACGCCCGTGGCACTGCCGGATGGTTCCTTCATTTGTGAC
GCGCAGGCACTGCAGGCGGAGGATGCGTATGAGACTACCGAGATGGAAGG
GTACACCAGCGTGTTTCAGGTGGAGAAGAGGGGAGGTGACTACTCTCCTA
GAAGCGAGAGGCGGTTCCTAAGAAACTTCACCGCGCCCAAGCTCTTCGTT
AGCATGTCTGCCTTTTGGCAGTCAGTTCCGATCTTCTTCACGTCCACTAC
CTTGAACGAGNCGGTTCAGGATACGCCCGTGGCACTGCCGGATGGTTCCT
TCATTTGTGACGCGCAGGCACTGCAGGTACCTACTGCGGTACCACCAGCG
GAGGGTGTGTGGCTCGAGATCGACCAGCGGAGCGCCCGGCTGGAGATCAG
CAGGCGGAGGATGCGTATGAGACTACCGAGATGGAAGGTCGTTTTGGACG
AAATGGACCACTCCCCGGGTCGACCGGGCAATGACGGAGGGCAAACCCAG
GTTGCAAGTGCCGCCGCTTTTCCCGGTGGAGATGGCAGCCGATGTTTGGA
AGCCTCTGACGTGGCCATCAGCCATGCCAGCGACGACGAGACGTGGAACG
TGTCCACGCTGCACTTGGTGCACGAGGACGCGCCGGCTCGCCTCTGGGCT
AGTGGCACCACCGATGAGGCCACAGGGAGCAGTGGCAAGAGGATGAAATC
GGCGCGAGTGCCGGGCTTCCGACCGAGCAAGGTGACGTGGGAGCTGCCCG
CTTCGTCGCTGAACTGTACCGGAGACGTGTTCGCTAGAGTGGCGCATCTG
AACTGTGGCGATTTTTTGAACGAAAACCTCGATAAGTTGGTGTGGCCACC
ATCGCTATGTCGGCTGACTTGTAGGTGGGACTTCGACCGCCAAGTTAACC
GCGTCAAATGGCCCAAGACCCTTCAACAGCTTGAATTCGGGTACGACTTC
AATCAGCCGATCGACAATGTTTCATGGGCAGTGTCACTCCTCGACCTGCC
GTTCGGGAATAGCTTTAACCGGCCGATTCACGGGGTCAAATGGCCGCCCT
CGCTGCGACGTCTCGCCTTTGGAGAGAAATGTAACCAGTCGATTGAAAGG
GTGTTGTGGTCAACGTCACTGCGAGAGCTTCCCTTCGGGCGTGATTTCAA
CCAGCCCATTGAAAGCATCTCGTGGGCATCATCGCTGGAACAGCTTACCT
TCTTCAAAAAAATATTGAGAGGCAGCAACTTCAACCAGCCAATTAACGTC
AAATGGCCACCGTCGCTGCTACGCCTCGTGTTTGGACACGTATTTAACCA
ACCGATCAAAATGGTATCGTGGCCAGCGTCACTGGGGGAGCTCACCTTCG
GACGCGAGTTCGACCAACCCATTGACAGTATCTCGTCGGCGTCATCGCTG
GAACAGCTCGTCTTCGTAAGCAGCCACTTCGATCAACCCATCGCCGGAGT
AGTGTGGCCGACCTCCCTCCAGAAGCTTTCGTTCGGGAAAGCGTTCAACC
AGTCCATCACCGGCGTAGTGTGGCCAGAATGCCTGGAGAATCTCTGGTTT
TGCGGCCGGAAAGTTCTTCCAGCGAGGGCGTGTTCTTCTATGATGGACGA
GGAAAACGTCTTTTCTGTAGGGTTTCACAGGGGAGAGGTTTAG back to top
|