EsuBft1040_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1040_4a-0001
Unique NameEsuBft1040_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_420contigScaffold_420:46389..50675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1040_4
Protein domainsPTHR32134
Protein domainsSSF52058
Protein domainsIPR008615
Ownerapollo_admin@sb-roscoff.fr
Notef-box and fnip repeat-containing protein l60 os:acanthamoeba polyphaga mimivirus gn:mimi [Automatic annotation]
Nb exon8
Length2043
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1040_4aEsuBft1040_4aEctocarpus subulatus male Bft15bgeneScaffold_420 46389..50675 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1040_4a-0001EsuBft1040_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_420 46389..50675 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1040_4a-0001-exonagat-exon-54462Ectocarpus subulatus male Bft15bexonScaffold_420 46389..46500 +
EsuBft1040_4a-0001-exonagat-exon-54461Ectocarpus subulatus male Bft15bexonScaffold_420 46602..46777 +
EsuBft1040_4a-0001-exonagat-exon-54464Ectocarpus subulatus male Bft15bexonScaffold_420 46825..47001 +
EsuBft1040_4a-0001-exonagat-exon-54463Ectocarpus subulatus male Bft15bexonScaffold_420 47079..47451 +
EsuBft1040_4a-0001-exonagat-exon-54465Ectocarpus subulatus male Bft15bexonScaffold_420 48631..48723 +
EsuBft1040_4a-0001-exonEsuBft1040_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_420 49442..49505 +
EsuBft1040_4a-0001-exonagat-exon-54460Ectocarpus subulatus male Bft15bexonScaffold_420 49562..50485 +
EsuBft1040_4a-0001-exonagat-exon-54459Ectocarpus subulatus male Bft15bexonScaffold_420 50552..50675 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1040_4a-0001-cdsEsuBft1040_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_420 46389..46500 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1040_4a-0001 ID=EsuBft1040_4a-0001|Name=EsuBft1040_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2043bp|location=Sequence derived from alignment at Scaffold_420:46389..50675+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCAGGGCGCACGCGGGAATGATCGCGGCAGCCAAGCCTCTGGGGGG
AAAGGTGCGGGAACGCACAAGGGATGTTGCCGGTACTGTCATAACTCCAC
CGAGCATGGGTGAGGTGGCCGGCGATGAGCTTGAAGAATTCGCCATCGCT
TTCGGTGATGACGCCCAGGAGTTGAAGGCGCCTGCTGCGGCGCTGCCAGA
GGAGCGCGCTGTTGACGAGGACCCGGTTCAGGATACGCCCGTGGCACTGC
CGGATCGTCTCTTCATCTACGACCCGCAGGCACTACAGGTGCACAATGCT
CCTATGACGGCGCTGCCGGATGGCCTCGTCGTCTGCGACCCGCAAGCACT
GCAGGTGCCTGCTGCGGCGCTGCCCGAGGAGCGCGCTGCTGATGAGGACC
CGGTTCAGGATACGCCCGTGGCACTGCCGGATGGTTCCTTCATTTGTGAC
GCGCAGGCACTGCAGGCGGAGGATGCGTATGAGACTACCGAGATGGAAGG
GTACACCAGCGTGTTTCAGGTGGAGAAGAGGGGAGGTGACTACTCTCCTA
GAAGCGAGAGGCGGTTCCTAAGAAACTTCACCGCGCCCAAGCTCTTCGTT
AGCATGTCTGCCTTTTGGCAGTCAGTTCCGATCTTCTTCACGTCCACTAC
CTTGAACGAGNCGGTTCAGGATACGCCCGTGGCACTGCCGGATGGTTCCT
TCATTTGTGACGCGCAGGCACTGCAGGTACCTACTGCGGTACCACCAGCG
GAGGGTGTGTGGCTCGAGATCGACCAGCGGAGCGCCCGGCTGGAGATCAG
CAGGCGGAGGATGCGTATGAGACTACCGAGATGGAAGGTCGTTTTGGACG
AAATGGACCACTCCCCGGGTCGACCGGGCAATGACGGAGGGCAAACCCAG
GTTGCAAGTGCCGCCGCTTTTCCCGGTGGAGATGGCAGCCGATGTTTGGA
AGCCTCTGACGTGGCCATCAGCCATGCCAGCGACGACGAGACGTGGAACG
TGTCCACGCTGCACTTGGTGCACGAGGACGCGCCGGCTCGCCTCTGGGCT
AGTGGCACCACCGATGAGGCCACAGGGAGCAGTGGCAAGAGGATGAAATC
GGCGCGAGTGCCGGGCTTCCGACCGAGCAAGGTGACGTGGGAGCTGCCCG
CTTCGTCGCTGAACTGTACCGGAGACGTGTTCGCTAGAGTGGCGCATCTG
AACTGTGGCGATTTTTTGAACGAAAACCTCGATAAGTTGGTGTGGCCACC
ATCGCTATGTCGGCTGACTTGTAGGTGGGACTTCGACCGCCAAGTTAACC
GCGTCAAATGGCCCAAGACCCTTCAACAGCTTGAATTCGGGTACGACTTC
AATCAGCCGATCGACAATGTTTCATGGGCAGTGTCACTCCTCGACCTGCC
GTTCGGGAATAGCTTTAACCGGCCGATTCACGGGGTCAAATGGCCGCCCT
CGCTGCGACGTCTCGCCTTTGGAGAGAAATGTAACCAGTCGATTGAAAGG
GTGTTGTGGTCAACGTCACTGCGAGAGCTTCCCTTCGGGCGTGATTTCAA
CCAGCCCATTGAAAGCATCTCGTGGGCATCATCGCTGGAACAGCTTACCT
TCTTCAAAAAAATATTGAGAGGCAGCAACTTCAACCAGCCAATTAACGTC
AAATGGCCACCGTCGCTGCTACGCCTCGTGTTTGGACACGTATTTAACCA
ACCGATCAAAATGGTATCGTGGCCAGCGTCACTGGGGGAGCTCACCTTCG
GACGCGAGTTCGACCAACCCATTGACAGTATCTCGTCGGCGTCATCGCTG
GAACAGCTCGTCTTCGTAAGCAGCCACTTCGATCAACCCATCGCCGGAGT
AGTGTGGCCGACCTCCCTCCAGAAGCTTTCGTTCGGGAAAGCGTTCAACC
AGTCCATCACCGGCGTAGTGTGGCCAGAATGCCTGGAGAATCTCTGGTTT
TGCGGCCGGAAAGTTCTTCCAGCGAGGGCGTGTTCTTCTATGATGGACGA
GGAAAACGTCTTTTCTGTAGGGTTTCACAGGGGAGAGGTTTAG
back to top

protein sequence of EsuBft1040_4a-0001

>EsuBft1040_4 ID=EsuBft1040_4|Name=EsuBft1040_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=680bp
MRRAHAGMIAAAKPLGGKVRERTRDVAGTVITPPSMGEVAGDELEEFAIA
FGDDAQELKAPAAALPEERAVDEDPVQDTPVALPDRLFIYDPQALQVHNA
PMTALPDGLVVCDPQALQVPAAALPEERAADEDPVQDTPVALPDGSFICD
AQALQAEDAYETTEMEGYTSVFQVEKRGGDYSPRSERRFLRNFTAPKLFV
SMSAFWQSVPIFFTSTTLNEXVQDTPVALPDGSFICDAQALQVPTAVPPA
EGVWLEIDQRSARLEISRRRMRMRLPRWKVVLDEMDHSPGRPGNDGGQTQ
VASAAAFPGGDGSRCLEASDVAISHASDDETWNVSTLHLVHEDAPARLWA
SGTTDEATGSSGKRMKSARVPGFRPSKVTWELPASSLNCTGDVFARVAHL
NCGDFLNENLDKLVWPPSLCRLTCRWDFDRQVNRVKWPKTLQQLEFGYDF
NQPIDNVSWAVSLLDLPFGNSFNRPIHGVKWPPSLRRLAFGEKCNQSIER
VLWSTSLRELPFGRDFNQPIESISWASSLEQLTFFKKILRGSNFNQPINV
KWPPSLLRLVFGHVFNQPIKMVSWPASLGELTFGREFDQPIDSISSASSL
EQLVFVSSHFDQPIAGVVWPTSLQKLSFGKAFNQSITGVVWPECLENLWF
CGRKVLPARACSSMMDEENVFSVGFHRGEV
back to top

mRNA from alignment at Scaffold_420:46389..50675+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1040_4a-0001 ID=EsuBft1040_4a-0001|Name=EsuBft1040_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4287bp|location=Sequence derived from alignment at Scaffold_420:46389..50675+ (Ectocarpus subulatus male Bft15b)
ATGCGCAGGGCGCACGCGGGAATGATCGCGGCAGCCAAGCCTCTGGGGGG AAAGGTGCGGGAACGCACAAGGGATGTTGCCGGTACTGTCATAACTCCAC CGAGCATGGGTGGTACGACTGCCCGCTTCGCCTGAGGAACGAGGCTGAGG ATGCCAAAGAAAAGGCGCACACCACAGAGGACTCCACCACGCAGGCATAG TTCACGCGGGTAGAGGTGGCCGGCGATGAGCTTGAAGAATTCGCCATCGC TTTCGGTGATGACGCCCAGGAGTTGAAGGCGCCTGCTGCGGCGCTGCCAG AGGAGCGCGCTGTTGACGAGGACCCGGTTCAGGATACGCCCGTGGCACTG CCGGATCGTCTCTTCATCTACGACCCGCAGGCACTACAGGTGCCTGCTGC GGCACTGCCAGAGGATCGCGCGCTGAAGTCGAGCAGGTGCACAATGCTCC TATGACGGCGCTGCCGGATGGCCTCGTCGTCTGCGACCCGCAAGCACTGC AGGTGCCTGCTGCGGCGCTGCCCGAGGAGCGCGCTGCTGATGAGGACCCG GTTCAGGATACGCCCGTGGCACTGCCGGATGGTTCCTTCATTTGTGACGC GCAGGCACTGCAGGTACCTACTGCGGTACCACCAGCGGAGGGTGTGTGGC TCGAGATCGACCAGCGGAGCGCCCGGCTGGAGATCAGCAGGCGGAGGATG CGTATGAGACTACCGAGATGGAAGGGTACACCAGCGTGTTTCAGGTGGAG AAGAGGGGAGGTGACTACTCTCCTAGAAGCGAGAGGCGGTTCCTAAGAAA CTTCACCGCGCCCAAGCTCTTCGTTAGCATGTCTGCCTTTTGGCAGTCAG TTCCGATCTTCTTCACGTCCACTACCTTGAACGAGNCGGTTCAGGATACG CCCGTGGCACTGCCGGATGGTTCCTTCATTTGTGACGCGCAGGCACTGCA GGTACCTACTGCGGTACCACCAGCGGAGGGTGTGTGGCTCGAGATCGACC AGCGGAGCGCCCGGCTGGAGATCAGCAGGCGGAGGATGCGTATGAGACTA CCGAGATGGAAGGGTACACCAGNCTAACGAAGAGCTTGGGCGCGGTGAAG TTTCTCAGGAACCGCCTCTCGCTTCTAGGAGAGTAGTCACCTCCCCTCTT CTCCACCTGAAACACGTTGGTGTACCCTACCAACTCGGTAGTCTCATACG CATCCTCTGCGCCACGTGCCAACCACAGGGTACTGCAGCTGAGAGACCTC GCTGGTACGTCTGTCATGCAGCAGCGGTCGAACGTGCAGTTGTGACGTAT GTGCATACACGAAAGCAGCTGCAACTTGACGGACGTGCAGCTGTGAAAAC TAACCATCACGCGCTCGACACATGCTGCTTGTCTGAGATCGGTGGATACA AAAGGTAGGCGAGGGCACGGCTTGTGGTGTTTGATTCGACCCGTCCAACA GCGAGAGCCTCGATTCTTCTCGGGAGGCCCTCTCTGTTATTTCCCAACCC TCAGAGATGATAAAGCATTGGGACAACACACCACAGCTCTTCGTTTGTCG GTCATTCTTCAATCAGGACCCAGGACCGATCTCCACGAGACACGACACAA CCCACAGCATAGTTGTCGTTGCCGAATATAGTCTTCGCATAATCTAGTCT AATGTAGCAACACAAACAAGGGGCCCTCCAAGTGGAAACCGTAGTACAAC ACCCCCCCAACCAAACTTGATGCATGGACGCGAGGAGTATAGCCAATTTG CACCGGCCGCTTGCAGCAGTCTACTGCTGTATGGGATTTAGTGTGTTCTA TATATACTCTTCATTTTATATACGTAGGCTAAGTGTCGTACTCTGAAACC CGATGAATACCGGGGTATATACGTTTACCACCCCCTCGCGGACGAGATTG ACGTGTAGCCTGGGGGTTTTCCTTGGTTTCCACGGGGAGGGCCCCTTGAA TAGACTCCACACATGAACCTATACGTCCAACGTACACGCGCATCATTCAT GAAACGCACTGCCACGACATGTGCTCTAGTTGTACCCATTGCTGGCATGC GGTCAACCAGGTCCTCATAAGCAACATGTTTGCTGTTCACCCCCACCTTG TTCCCATTTGACGACGATGACGTGCTAGGCAATACTTCAGCAAGCGTGAG ATACATCGTCTGAAGGACTCGGGTGCCTCTGCACGAGATCGCGCTTGCCG TACAATCAAGACACCTTCCAAGGCATTGCTGCCTGAGAACAGTCGTTTTG GACGAAATGGACCACTCCCCGGGTCGACCGGGCAATGACGGAGGGCAAAC CCAGGTTGCAAGTGCCGCCGCTTTTCCCGGTGGAGGTATGTTCTGTAGCA AATTGCCACACCTTCCTCTAGGTCACCACCCCCTACTTCGGTTGTGGGCG TACAGTAGAGCTTTGCGGGGTGTATCGTACGCAACTTATATTGCAAGCAA TTTGTAGAGCACACAGTTCCCTGGCGTGTAGAGTCAATAGCGGCTGTCCT ACTGATTCAACGGGCAGAAGCAGTAGTTTTTGGCATACCTTGCCTGGCCA CGCACCAATCGCCCTTGAAGCCAGACGACCTGTTTTACTGTTTAATGCGG ATCTCGAGAATGGAATCAAGGAAGACGAAACACTCGTGAGTCTACCTCTG AATAGAGTCCATCGAGAGGCGTCTTCTCGTAACCATTCGACGTTGATGGC AGGTGTTGGGAGCGTGATACTCTTTCTTCGATTTCCGTACGCACCACTCG GCAATTCTTTAGCATTGTAGGAATAATCCCTTATCATGGATGTTGTGCCT CACACTGGACGCGAGTTTGGCGTGTTTCGGAGATTTAATTTCCGCCATAC AAGGCTACGTCCCTGTCAGTGACGGCACTAGTGTAGCACGCAGCTCTAAG ACAGGTTCGGCAACAAGAACTAGAAGAGTGTCCTCTTTGGCAACTTTGCG AGTACTCGAGCTTCAAGTACCAGCCCTACCCCAATCCCCTGCCACAAGAT CGATGCCACTTGGTTTTTCCACTTTTGCACGCAATGCCGTTGCACGGTCG CAGATGGCAGCCGATGTTTGGAAGCCTCTGACGTGGCCATCAGCCATGCC AGCGACGACGAGACGTGGTACACGTCGACGAACAACTCCAGCTCGCATCC TTGCGGCTCTGCACGGCTTGCAGGAACGTGTCCACGCTGCACTTGGTGCA CGAGGACGCGCCGGCTCGCCTCTGGGCTAGTGGCACCACCGATGAGGCCA CAGGGAGCAGTGGCAAGAGGATGAAATCGGCGCGAGTGCCGGGCTTCCGA CCGAGCAAGGTGACGTGGGAGCTGCCCGCTTCGTCGCTGAACTGTACCGG AGACGTGTTCGCTAGAGTGGCGCATCTGAACTGTGGCGATTTTTTGAACG AAAACCTCGATAAGTTGGTGTGGCCACCATCGCTATGTCGGCTGACTTGT AGGTGGGACTTCGACCGCCAAGTTAACCGCGTCAAATGGCCCAAGACCCT TCAACAGCTTGAATTCGGGTACGACTTCAATCAGCCGATCGACAATGTTT CATGGGCAGTGTCACTCCTCGACCTGCCGTTCGGGAATAGCTTTAACCGG CCGATTCACGGGGTCAAATGGCCGCCCTCGCTGCGACGTCTCGCCTTTGG AGAGAAATGTAACCAGTCGATTGAAAGGGTGTTGTGGTCAACGTCACTGC GAGAGCTTCCCTTCGGGCGTGATTTCAACCAGCCCATTGAAAGCATCTCG TGGGCATCATCGCTGGAACAGCTTACCTTCTTCAAAAAAATATTGAGAGG CAGCAACTTCAACCAGCCAATTAACGTCAAATGGCCACCGTCGCTGCTAC GCCTCGTGTTTGGACACGTATTTAACCAACCGATCAAAATGGTATCGTGG CCAGCGTCACTGGGGGAGCTCACCTTCGGACGCGAGTTCGACCAACCCAT TGACAGTATCTCGTCGGCGTCATCGCTGGAACAGCTCGTCTTCGTAAGCA GCCACTTCGATCAACCCATCGCCGGAGTAGTGTGGCCGACCTCCCTCCAG AAGCTTTCGTTCGGGAAAGCGTTCAACCAGTCCATCACCGGCGTAGTGTG ACCAAACTTGCTGCGACATCTCTATATGGGGAACTGTTTCGAGCAACCGA TCGATGGCGTCAGGTGGCCAGAATGCCTGGAGAATCTCTGGTTTTGCGGC CGGAAAGTTCTTCCAGCGAGGGCGTGTTCTTCTATGATGGACGAGGAAAA CGTCTTTTCTGTAGGGTTTCACAGGGGAGAGGTTTAG
back to top

Coding sequence (CDS) from alignment at Scaffold_420:46389..50675+

>EsuBft1040_4a-0001 ID=EsuBft1040_4a-0001|Name=EsuBft1040_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2043bp|location=Sequence derived from alignment at Scaffold_420:46389..50675+ (Ectocarpus subulatus male Bft15b)
ATGCGCAGGGCGCACGCGGGAATGATCGCGGCAGCCAAGCCTCTGGGGGG
AAAGGTGCGGGAACGCACAAGGGATGTTGCCGGTACTGTCATAACTCCAC
CGAGCATGGGTGAGGTGGCCGGCGATGAGCTTGAAGAATTCGCCATCGCT
TTCGGTGATGACGCCCAGGAGTTGAAGGCGCCTGCTGCGGCGCTGCCAGA
GGAGCGCGCTGTTGACGAGGACCCGGTTCAGGATACGCCCGTGGCACTGC
CGGATCGTCTCTTCATCTACGACCCGCAGGCACTACAGGTGCACAATGCT
CCTATGACGGCGCTGCCGGATGGCCTCGTCGTCTGCGACCCGCAAGCACT
GCAGGTGCCTGCTGCGGCGCTGCCCGAGGAGCGCGCTGCTGATGAGGACC
CGGTTCAGGATACGCCCGTGGCACTGCCGGATGGTTCCTTCATTTGTGAC
GCGCAGGCACTGCAGGCGGAGGATGCGTATGAGACTACCGAGATGGAAGG
GTACACCAGCGTGTTTCAGGTGGAGAAGAGGGGAGGTGACTACTCTCCTA
GAAGCGAGAGGCGGTTCCTAAGAAACTTCACCGCGCCCAAGCTCTTCGTT
AGCATGTCTGCCTTTTGGCAGTCAGTTCCGATCTTCTTCACGTCCACTAC
CTTGAACGAGNCGGTTCAGGATACGCCCGTGGCACTGCCGGATGGTTCCT
TCATTTGTGACGCGCAGGCACTGCAGGTACCTACTGCGGTACCACCAGCG
GAGGGTGTGTGGCTCGAGATCGACCAGCGGAGCGCCCGGCTGGAGATCAG
CAGGCGGAGGATGCGTATGAGACTACCGAGATGGAAGGTCGTTTTGGACG
AAATGGACCACTCCCCGGGTCGACCGGGCAATGACGGAGGGCAAACCCAG
GTTGCAAGTGCCGCCGCTTTTCCCGGTGGAGATGGCAGCCGATGTTTGGA
AGCCTCTGACGTGGCCATCAGCCATGCCAGCGACGACGAGACGTGGAACG
TGTCCACGCTGCACTTGGTGCACGAGGACGCGCCGGCTCGCCTCTGGGCT
AGTGGCACCACCGATGAGGCCACAGGGAGCAGTGGCAAGAGGATGAAATC
GGCGCGAGTGCCGGGCTTCCGACCGAGCAAGGTGACGTGGGAGCTGCCCG
CTTCGTCGCTGAACTGTACCGGAGACGTGTTCGCTAGAGTGGCGCATCTG
AACTGTGGCGATTTTTTGAACGAAAACCTCGATAAGTTGGTGTGGCCACC
ATCGCTATGTCGGCTGACTTGTAGGTGGGACTTCGACCGCCAAGTTAACC
GCGTCAAATGGCCCAAGACCCTTCAACAGCTTGAATTCGGGTACGACTTC
AATCAGCCGATCGACAATGTTTCATGGGCAGTGTCACTCCTCGACCTGCC
GTTCGGGAATAGCTTTAACCGGCCGATTCACGGGGTCAAATGGCCGCCCT
CGCTGCGACGTCTCGCCTTTGGAGAGAAATGTAACCAGTCGATTGAAAGG
GTGTTGTGGTCAACGTCACTGCGAGAGCTTCCCTTCGGGCGTGATTTCAA
CCAGCCCATTGAAAGCATCTCGTGGGCATCATCGCTGGAACAGCTTACCT
TCTTCAAAAAAATATTGAGAGGCAGCAACTTCAACCAGCCAATTAACGTC
AAATGGCCACCGTCGCTGCTACGCCTCGTGTTTGGACACGTATTTAACCA
ACCGATCAAAATGGTATCGTGGCCAGCGTCACTGGGGGAGCTCACCTTCG
GACGCGAGTTCGACCAACCCATTGACAGTATCTCGTCGGCGTCATCGCTG
GAACAGCTCGTCTTCGTAAGCAGCCACTTCGATCAACCCATCGCCGGAGT
AGTGTGGCCGACCTCCCTCCAGAAGCTTTCGTTCGGGAAAGCGTTCAACC
AGTCCATCACCGGCGTAGTGTGGCCAGAATGCCTGGAGAATCTCTGGTTT
TGCGGCCGGAAAGTTCTTCCAGCGAGGGCGTGTTCTTCTATGATGGACGA
GGAAAACGTCTTTTCTGTAGGGTTTCACAGGGGAGAGGTTTAG
back to top