EsuBft103_18a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft103_18a-0001
Unique NameEsuBft103_18a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_344contigScaffold_344:181081..181284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft103_18
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length20
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft103_18aEsuBft103_18aEctocarpus subulatus male Bft15bgeneScaffold_344 181081..181284 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_18a-0001-exonEsuBft103_18a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_344 181081..181284 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_18a-0001-exonagat-five_prime_utr-233Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_344 181081..181097 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_18a-0001-cdsEsuBft103_18a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_344 181098..181271 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_18a-0001-exonagat-three_prime_utr-381Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_344 181272..181284 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_18a-0001EsuBft103_18Ectocarpus subulatus male Bft15bpolypeptideScaffold_344 181098..181271 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft103_18a-0001 ID=EsuBft103_18a-0001|Name=EsuBft103_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=204bp|location=Sequence derived from alignment at Scaffold_344:181081..181284+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCGAGGAACCGACTGGGATGGACAGCAACGAGGGCGTGTACGAAGCGGAG
CGGGCGAGTTTGGTCGTGCTAGGACTGGCCACAGCGGCACCGGAGCAGCG
GCACCGGAGCAACGGCACCGGAGCAGCCGAACCGGAACAGGCGGACGGCA
TCGAACCGTGGTGTACGGACAACCATCTTTTGTGTTGCTAATTTTTTTTC
CGTT
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protein sequence of EsuBft103_18a-0001

>EsuBft103_18 ID=EsuBft103_18|Name=EsuBft103_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=57bp
MDSNEGVYEAERASLVVLGLATAAPEQRHRSNGTGAAEPEQADGIEPWCT
DNHLLCC
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mRNA from alignment at Scaffold_344:181081..181284+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft103_18a-0001 ID=EsuBft103_18a-0001|Name=EsuBft103_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=204bp|location=Sequence derived from alignment at Scaffold_344:181081..181284+ (Ectocarpus subulatus male Bft15b)
GCGAGGAACCGACTGGGATGGACAGCAACGAGGGCGTGTACGAAGCGGAG
CGGGCGAGTTTGGTCGTGCTAGGACTGGCCACAGCGGCACCGGAGCAGCG
GCACCGGAGCAACGGCACCGGAGCAGCCGAACCGGAACAGGCGGACGGCA
TCGAACCGTGGTGTACGGACAACCATCTTTTGTGTTGCTAATTTTTTTTC
CGTT
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Coding sequence (CDS) from alignment at Scaffold_344:181081..181284+

>EsuBft103_18a-0001 ID=EsuBft103_18a-0001|Name=EsuBft103_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=174bp|location=Sequence derived from alignment at Scaffold_344:181081..181284+ (Ectocarpus subulatus male Bft15b)
ATGGACAGCAACGAGGGCGTGTACGAAGCGGAGCGGGCGAGTTTGGTCGT
GCTAGGACTGGCCACAGCGGCACCGGAGCAGCGGCACCGGAGCAACGGCA
CCGGAGCAGCCGAACCGGAACAGGCGGACGGCATCGAACCGTGGTGTACG
GACAACCATCTTTTGTGTTGCTAA
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