EsuBft103_16a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft103_16a-0001
Unique NameEsuBft103_16a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_344contigScaffold_344:166791..168697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft103_16
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsTRANSMEMBRANE
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length170
Hectar predicted targeting categorysignal anchor
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft103_16aEsuBft103_16aEctocarpus subulatus male Bft15bgeneScaffold_344 166791..168697 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_16a-0001-exonagat-exon-393Ectocarpus subulatus male Bft15bexonScaffold_344 166791..166964 +
EsuBft103_16a-0001-exonEsuBft103_16a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_344 167163..168697 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_16a-0001-cdsEsuBft103_16a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_344 166791..166964 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_16a-0001-exonagat-three_prime_utr-379Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_344 167196..168697 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_16a-0001EsuBft103_16Ectocarpus subulatus male Bft15bpolypeptideScaffold_344 166791..167195 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft103_16a-0001 ID=EsuBft103_16a-0001|Name=EsuBft103_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1709bp|location=Sequence derived from alignment at Scaffold_344:166791..168697+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCAGCGCCGGGGGGGGCGTGTCTTCCCCCCGTGACTCTCCCCTGCG
GCCCGCTGCGGCCATACTTGCGGCGAACCCTGTCTCGGGCACTAACCGAG
ACAGGGCTTCCATGACGGTTCCTAACTTTTCCGTCATCATGCTCTCCATT
TTTGCGGTGGCCTGGTCGATGGCTGTTGCCCTCTGTTGGTATGCCCTTGT
TGTGTGACCTCCAGAGTCCAAAGAGTGTTGTTAACGGCATGTATTATCGT
AGGGGGACATGAGGGAGAAGGAGGGAGGAAGAGTGCCAGGCCCAAAGTCA
GTCGGAAAGGGGGCCCGCAACTCGAATCTCAAGGTCTCTCCTAGCCGCCC
CTCAAGGCAATCCCATCTGCGGTACACGAAACCGCCAGTGATTTGGTACA
ATCCGACTAATCTACCTCCACGCACGAACACCCTCCCTTGGTTCTTTACG
CCAGTGAATAACCACCACTCGTGCGTCGAAGAGTACATCCGAAAAGCACC
TAAAACAACGCAAATCAGAAACAAGGGGAAACCCGCCATCGGATCAAAAC
CCCTTACAAATCTCAACGCCTTCACGCCGTTCATATCACGAAAGATTCCA
ACGGCCGTACTGCAACATCAAGGCAAGACAATATCTACCACCGCCCCCGG
CTCGCTCTCTACGCCACGCTCGGCTGACTCGACAAGGTCCTCCCTGCGCA
GCACAAAAACAAATCATCAAGCACGCCCCTACCCTTCTGGTGATGTCGTA
CGACAAACTTCGCCAAAATAGCCACCTTCAATGCACCTGATATCCATTGT
CCGCTCCTCGAATAACACTGATAGTCTACACGCCGTATGCCCTTCCTTAC
GCAACACATGCCTAGTAGTTGGGGACGACTTCATACGCCCTCTCTAGTGT
GCCAAACAACGCGCGTCGCTTTCCCCTTCTCGGAAAGGCGCTTTCCTTTC
TTCATTCCTTGAACAAAGGCGACGCCTGGTGAGATTCGAACTCCCGGCGT
ATCCTTACTCGTTACATGGTCTTATTCACCAGACTACTCAGTCACTTGGT
TGCCTAGAAGCACATACACGTGGCGATCGTCCAGCATTCAATCAACAAAT
CAGACACATGGTACATGCAACATCGTGGAAACACGACCAAACTCCTCCCG
TAAATAGAGTCCAACAACACCCAAGAGGCAACGCCCTCCGTCATCCAATA
ACTGCAAGATCGAAATAGTTCCACCTCAATCATGAGAGGACGACCATAAC
TCTGTCACGTTGCAGAATATCTGCAGACCGGGCGCAAAACTCTCCGAGCA
TTACACTCTCCAAAACAAAAAACCCACGCACGGCGCCACCCTCCCTTATT
CTGCAACCACACAGGCCACACAGGGAACACAAAACAAGCGGTGACGCGTG
AAACTCGAGCATGTGGCGGCGGAAACACCCATGGATTTCAACAAGCAATT
AACAGCGATCTATGCAAGTCCGCAACAGCGCCTCACTTGCGACTATTCAC
GTGCAATACAAGTTATCGCCCTTTACTGCTAAACGCCACATACAAAAGAA
TCAAAAAAAAAAACAAAATAAAACACATTCCGGTACCAACCAAAATGAAG
ATAGTGCCCGCGGAAATCCACCGCGCGGCTGGTCCGTTTTGCTTCCCTCC
CCACCCGCCCACACCCGACGTCCCTCGGCGTCCCGACGTTCCTCGGTGTA
GCGGTGTAG
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protein sequence of EsuBft103_16a-0001

>EsuBft103_16 ID=EsuBft103_16|Name=EsuBft103_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=68bp
MTSAGGGVSSPRDSPLRPAAAILAANPVSGTNRDRASMTVPNFSVIMLSI
FAVAWSMAVALCWYALVV
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mRNA from alignment at Scaffold_344:166791..168697+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft103_16a-0001 ID=EsuBft103_16a-0001|Name=EsuBft103_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1907bp|location=Sequence derived from alignment at Scaffold_344:166791..168697+ (Ectocarpus subulatus male Bft15b)
ATGACCAGCGCCGGGGGGGGCGTGTCTTCCCCCCGTGACTCTCCCCTGCG
GCCCGCTGCGGCCATACTTGCGGCGAACCCTGTCTCGGGCACTAACCGAG
ACAGGGCTTCCATGACGGTTCCTAACTTTTCCGTCATCATGCTCTCCATT
TTTGCGGTGGCCTGGTCGATGGCTGTATTGACCTCCTCGTGGGTCGGGGC
TGCATCGCCATTGCCGAACTCTCCAGACGCAGACGGCATGTGTCCACTTC
ACTAAGATAGTATGAGGTCAACCTTCGCTCTAGAGTGTTGATTGGTTTCA
AGCCTAGTGCTGCTGGATAAGCACGGCTGACCCGGTTGACAGGAATGAAG
AGATGGTGAAGTCGTAAATTAGGTTGCCCTCTGTTGGTATGCCCTTGTTG
TGTGACCTCCAGAGTCCAAAGAGTGTTGTTAACGGCATGTATTATCGTAG
GGGGACATGAGGGAGAAGGAGGGAGGAAGAGTGCCAGGCCCAAAGTCAGT
CGGAAAGGGGGCCCGCAACTCGAATCTCAAGGTCTCTCCTAGCCGCCCCT
CAAGGCAATCCCATCTGCGGTACACGAAACCGCCAGTGATTTGGTACAAT
CCGACTAATCTACCTCCACGCACGAACACCCTCCCTTGGTTCTTTACGCC
AGTGAATAACCACCACTCGTGCGTCGAAGAGTACATCCGAAAAGCACCTA
AAACAACGCAAATCAGAAACAAGGGGAAACCCGCCATCGGATCAAAACCC
CTTACAAATCTCAACGCCTTCACGCCGTTCATATCACGAAAGATTCCAAC
GGCCGTACTGCAACATCAAGGCAAGACAATATCTACCACCGCCCCCGGCT
CGCTCTCTACGCCACGCTCGGCTGACTCGACAAGGTCCTCCCTGCGCAGC
ACAAAAACAAATCATCAAGCACGCCCCTACCCTTCTGGTGATGTCGTACG
ACAAACTTCGCCAAAATAGCCACCTTCAATGCACCTGATATCCATTGTCC
GCTCCTCGAATAACACTGATAGTCTACACGCCGTATGCCCTTCCTTACGC
AACACATGCCTAGTAGTTGGGGACGACTTCATACGCCCTCTCTAGTGTGC
CAAACAACGCGCGTCGCTTTCCCCTTCTCGGAAAGGCGCTTTCCTTTCTT
CATTCCTTGAACAAAGGCGACGCCTGGTGAGATTCGAACTCCCGGCGTAT
CCTTACTCGTTACATGGTCTTATTCACCAGACTACTCAGTCACTTGGTTG
CCTAGAAGCACATACACGTGGCGATCGTCCAGCATTCAATCAACAAATCA
GACACATGGTACATGCAACATCGTGGAAACACGACCAAACTCCTCCCGTA
AATAGAGTCCAACAACACCCAAGAGGCAACGCCCTCCGTCATCCAATAAC
TGCAAGATCGAAATAGTTCCACCTCAATCATGAGAGGACGACCATAACTC
TGTCACGTTGCAGAATATCTGCAGACCGGGCGCAAAACTCTCCGAGCATT
ACACTCTCCAAAACAAAAAACCCACGCACGGCGCCACCCTCCCTTATTCT
GCAACCACACAGGCCACACAGGGAACACAAAACAAGCGGTGACGCGTGAA
ACTCGAGCATGTGGCGGCGGAAACACCCATGGATTTCAACAAGCAATTAA
CAGCGATCTATGCAAGTCCGCAACAGCGCCTCACTTGCGACTATTCACGT
GCAATACAAGTTATCGCCCTTTACTGCTAAACGCCACATACAAAAGAATC
AAAAAAAAAAACAAAATAAAACACATTCCGGTACCAACCAAAATGAAGAT
AGTGCCCGCGGAAATCCACCGCGCGGCTGGTCCGTTTTGCTTCCCTCCCC
ACCCGCCCACACCCGACGTCCCTCGGCGTCCCGACGTTCCTCGGTGTAGC
GGTGTAG
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Coding sequence (CDS) from alignment at Scaffold_344:166791..168697+

>EsuBft103_16a-0001 ID=EsuBft103_16a-0001|Name=EsuBft103_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=207bp|location=Sequence derived from alignment at Scaffold_344:166791..168697+ (Ectocarpus subulatus male Bft15b)
ATGACCAGCGCCGGGGGGGGCGTGTCTTCCCCCCGTGACTCTCCCCTGCG
GCCCGCTGCGGCCATACTTGCGGCGAACCCTGTCTCGGGCACTAACCGAG
ACAGGGCTTCCATGACGGTTCCTAACTTTTCCGTCATCATGCTCTCCATT
TTTGCGGTGGCCTGGTCGATGGCTGTTGCCCTCTGTTGGTATGCCCTTGT
TGTGTGA
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