EsuBft103_15a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft103_15a-0001
Unique NameEsuBft103_15a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_344contigScaffold_344:155872..162243 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft103_15
Protein domainsSignalP-noTM
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon6
Length90
Hectar predicted targeting categorysignal peptide
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft103_15aEsuBft103_15aEctocarpus subulatus male Bft15bgeneScaffold_344 155872..162243 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_15a-0001EsuBft103_15Ectocarpus subulatus male Bft15bpolypeptideScaffold_344 155911..161830 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_15a-0001-exonagat-exon-389Ectocarpus subulatus male Bft15bexonScaffold_344 155872..156110 -
EsuBft103_15a-0001-exonEsuBft103_15a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_344 160493..160501 -
EsuBft103_15a-0001-exonagat-exon-392Ectocarpus subulatus male Bft15bexonScaffold_344 160691..160781 -
EsuBft103_15a-0001-exonagat-exon-391Ectocarpus subulatus male Bft15bexonScaffold_344 161329..161339 -
EsuBft103_15a-0001-exonagat-exon-390Ectocarpus subulatus male Bft15bexonScaffold_344 161515..161611 -
EsuBft103_15a-0001-exonagat-exon-388Ectocarpus subulatus male Bft15bexonScaffold_344 161786..162243 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_15a-0001-exonagat-three_prime_utr-378Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_344 155872..155910 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_15a-0001-cdsEsuBft103_15a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_344 155911..156110 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_15a-0001-exonagat-five_prime_utr-232Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_344 161831..162243 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft103_15a-0001 ID=EsuBft103_15a-0001|Name=EsuBft103_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=905bp|location=Sequence derived from alignment at Scaffold_344:155872..162243- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGTTCTGTGGGAATGTTCTTCGTGGATGGTGCATTACCCCGAGTGTTTCT
TGTGGATAGTGCATCAGTCAGAGGATTCATGGTACGTTGTGAAGTACGTT
AGCCCCTGTCTGTTGGGTCTTTGTGTTCCGATATCATTGTGTTCTACTTT
TTTGCGTTGGTCGAGCGACACGGGTGGTGGCTGCGGTGCTGCGGTGCTGT
GGTGCTCCCCACCCTTGCTCACTTCACCTTTTTGACCTGTTCTCCTGGTC
CAAGGTCTCAACAATAAAACATCTTTTCCCCAGAAGCCACGAGGTTACCA
ACACGCTATAGCGAGACCAGTCGACTGCTGCTTGTCCCCTCGGACTGTAC
GTCAAGACTGAACGGAGGAAGATTGATCACCTTGCTTTGTGATGTGTGGG
CCGGCTGGGGATCATGTGGATGACCCACCTCCGGGTGATTCGCAGGATGT
TATTGGTGGTGGAGTCCTCTGTTCCAGTAGCTGCTGCACCCGGAAGCGGC
GGAACAGAGTACGCTGGTGCGCATCAATCGGATGTCACTGGCAGGACTGC
GGGAGGACTGCGGGAGGCTGCCATCGCTTCTGCAGGCCAAGTCGGGTGGG
CGAGGCCAGGATTAGTCGGGCCGTGCTGCGAGAGGCGCAGCAGGTGCGGC
GGGATTTGCGCGTGGGTAGAGTCGGAGAGTCAGGAAGGGTTGGATGAAGA
GTTGGTTGAGTCGGGAGGGCAGGAGGTAGAATCGGAGTCATTTTCCCCTC
TACGCACGTTCCATCCAATCGTCGTGCGCGGCGTGAGCTTGCTAGTTACA
ACACTGCTGCGAATGAGAATGTTGAAGTCAGAGAAGGCAGAACCCGTGCG
CAAACTCGGGCCGTAAACCAGCAGAGCGTATCCGGTCTCATGGCCAATCT
AGGAC
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protein sequence of EsuBft103_15a-0001

>EsuBft103_15 ID=EsuBft103_15|Name=EsuBft103_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=150bp
MWMTHLRVIRRMLLVVESSVPVAAAPGSGGTEYAGAHQSDVTGRTAGGLR
EAAIASAGQVGWARPGLVGPCCERRSRCGGICAWVESESQEGLDEELVES
GGQEVESESFSPLRTFHPIVVRGVSLLVTTLLRMRMLKSEKAEPVRKLGP
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mRNA from alignment at Scaffold_344:155872..162243-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft103_15a-0001 ID=EsuBft103_15a-0001|Name=EsuBft103_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6372bp|location=Sequence derived from alignment at Scaffold_344:155872..162243- (Ectocarpus subulatus male Bft15b)
CGTTCTGTGGGAATGTTCTTCGTGGATGGTGCATTACCCCGAGTGTTTCT
TGTGGATAGTGCATCAGTCAGAGGATTCATGGTACGTTGTGAAGTACGTT
AGCCCCTGTCTGTTGGGTCTTTGTGTTCCGATATCATTGTGTTCTACTTT
TTTGCGTTGGTCGAGCGACACGGGTGGTGGCTGCGGTGCTGCGGTGCTGT
GGTGCTCCCCACCCTTGCTCACTTCACCTTTTTGACCTGTTCTCCTGGTC
CAAGGTCTCAACAATAAAACATCTTTTCCCCAGAAGCCACGAGGTTACCA
ACACGCTATAGCGAGACCAGTCGACTGCTGCTTGTCCCCTCGGACTGTAC
GTCAAGACTGAACGGAGGAAGATTGATCACCTTGCTTTGTGATGTGTGGG
CCGGCTGGGGATCATGTGGATGACCCACCTCCGGGTGATTCGCAGGATGT
TATTGGTGGTGAGAGATTGGATTCGATTGAGACACAGCTGTCCCAGCTCA
CGAGCATAATCAAGTCGCTTGTTGGGCAACGAGGTGATCAGGTGGAGTCC
TCTGTTCCAGTAGCTGCTGCACCCGGAAGCGNCCCAGCTCACGAGTATAA
TCAAGTCGCTTGTTGGGCAACGAGGTGATCAGGTGGAGTCCTCTGTTCCA
GTAGCTGCTGCACCCGGAAGCGGCGGAACAGAGTACGCTGGTGCGCATCA
ATCGGATGTCACTGGCAGGACTGCGGGAGGTACGGGCAGCAGTGCTCAAG
TCCTTGGCATGTCCAGCATGTGGGTTGGGAGTAGCAGTCTTGCAGCCTCA
GGCTTGAACCTTCGTGCAATAGTTGAAGTATGTCGTTCCTCTGCTGGTAG
TACTGCCAGCGGCGGAACCGACGCCGGTTAGCATCCTGTAGATGCTACTG
GCAGGACTGCGGGAGGTACGGGCAGCAGTGCCCAAGACCTTGGCATGTCC
GGCGTGAGAGTTGGGAGTAGTGAGTAGTCTTCTAGACTCAGGCTTGAGCC
CTCATGCATCTGCTGTAAATCGTCCCTCTGCTGGTGATTGTGCGTGGAGG
TAGATTAGTCAGATTGTACCAAATCACTGGCGGTTTCGTGTACCGCAGAT
GGGATTGCCTTGAGGGGCGGCTAGGAGAGACCTTGAGATACGAGTTGCGG
GCCCCCTTTTCGACTGGCTTTGGGCCTGGCACTCTTCCTCCCTCCTTCTC
CCTCATGTCCCCCTACGATAATACATGCCGTTAACAACACTCTTTGGACT
CTGGAGGTCACACAACAAGGGCATACCAACATTCTAGAATGCATCCTCCG
GAGGAGCCCGATGATCTTCAGAGTTCAGCTGTGGTGAGAAGCAGCAGCAG
GAGCGTTGTGCGTGATCCCGTGGTAAGGACATTACTGAGTGACACGACGC
GCAAGTTTTGACTAGGGTTTCGAGTTGAGGCGAGAACCAGGGGTGTAGGA
GATGATGGGCAGGCTGCCATCGCTTCTGCAGGCCAAGTCGGGTGGGCGAG
GCCAGGATTAGTCGGGCCGTGCTGCGAGAGGCGCAGCAGGTGCGGCGGGA
TTTGTGTGTTCCACCGAGCAGCCACCAAGAGCTGCGTGGTCGTCAGGGAG
GGCGACACTGCGGGAGGAGAGAGCAGCAGTAGGCCGGACGTGGATGGCGC
CCTGGTGCGGGCTGTTGAGGTCCCTGCTGAAGGTGTGTTTGGTGCATTCT
CTGCCTTCTACCAAGAGCGGGAAGGGGGCAGCGAACATCAAGGCGCGTGG
GGTACCGCGTGCACTCTACATCATCAGCTGGCGGTGCCCGGAAATACGTA
GCTGTGGGATGGTGGAATTCAAAGACGCGAGAACGCCGTCGTGTGCCTGT
CTGCTACACCGCTACACCGAGGAACGTCGGGACGCCGAGGGACATCGGGT
GTGGGCGGGTGGGGAGGGAAGCAAAACGGACCAGCCGCGCGGTGGATTTC
CGCGGGCACTATCTTCATTTTGGTTGGTACCGGAATGTGTTTTATTTTGT
TTTTCTTTTCTGATTCTTTTGTATGTGGCGTTTAGCAGTAACGGGCGATA
ACTTGTATTGCACGTGAATAGTCGCAAGTGAGGCGCTGTTGCGGACTTGC
ATAGATCGCTGTTAATTGCTTGTTGCAATCTATGGGTGTTTCCGCCGCCA
CATGCTCGAGTTTCACGCGTCACCGCTTGTTTTGTGTTCCCTGTGTGGCC
TGTGTGGTTGCAGAATAAGGGAGGGTGGCGCCGTGCGTGGTTTTTTTGTT
TTGGAGAGTGTAATGCTCGGAGAGTTTTGCGCCCGGTCTGCAGATATTCT
GCAATGTGACAGAGTTATGGTCGTCCACTCAGGTCGTCCACTCATGATTG
AGGTGGAACTATTTCGGTCTTGCAGTTATTGGATGACGGAGGGCGTTGCC
TCTTGGGTGTTGTTGGACTCTCTTTATGGGAGGAGTTTGATCATGTTTCC
ACGATGTTGCATGTACCATGTGTCTGATTTGTTGATTGAATGCTGGACGA
TCGCCACGTGTATGTGCTTCTAGGCAACCAAGTGACTGAGTAGTCTGGTG
AATAAGACCATGTAACGAGTAAGGATACGCCGGGAGTTCGAATCTCACCA
GGCGTCGCCTTTGTTCAAGGAATGAAGAAAGGAAAGCGCCTTTCCGAGAA
GGGGAAAGCGACGCGCGTTGTTTGGCACACTAGAGAGGGCGTATGAAGTC
GTCCCCAACTACTAGGCATGTGTTGCGTAAGGAAGGGCATACGGCGTGTA
GACTATCAGTGTTATTCGAGGAGCGGACAATGATATCAGGTGCATTGTAG
GTGGCTATTTTGGCGAAGTTTGTCGTACGACTTTACCAGAAGGGTAGGGG
CGTGCTTGATGATTTGTTTTTGTGCTGCGCAGGGAGGACCTTGTCGAGTC
AGCCGAGTGTGGCGTAGAGAGCGAGCCGGGGGCGGTGGTAGATATTGTCA
TGCCATCATGTTGCAGTACGGCCGTTGGAATCTGTCGTGATATGAACGGC
GTGAAGGCATTGAGATTTGTTAGGGGTTTTGATCCGATGGCGGGTTTCCC
CTTATTTCTGATTTGCGTTGTTTTAGGTGCTTTTCGGATGTACTCTTCGA
CGCACGAGTGGTGGTTATTCACTGGCGTTAAAAACCAAGGGAGGGTGTTC
GTGCGTGGAGGTAGATTAGTCGGATTGTACCAAATCACTGGCGGTTTCGT
GTACCGCAGATGGGATTGCCTTGAGGGGCGGCTAGGAGAGACCTTGAGAT
ACGAGTTGCGGGCCCCCTTTCCGACTGACTTTGGGCCTGGCACTCTTCGT
CCCTCCTTCTCCCTCATGTCCCCCTACGATAATACATGCCGTTAACAACA
CTCTTTGGACTCTGGAGGTCACACAACAAGGGCATACCAACAGCTGGTGC
TGCAAGCTTTGGTTCGATTGGAACTGTTAGTAGGGCTTTAGGTAGCCAGT
CTTTCGGTTCAGGAATGGTTGGTGGGACTTTAGGTAGTCAGTCCTCCATT
CCGGGAATGCATAGTGGGGTTTAGGTAGCCAGTCTTCCATTCCACCCCCA
TCTACTCCATCGAGTGAGTGGTGGGGACGTTTCGCCAGAAGAAACACATA
TGTTCCTGGGGCCGGCATTTTCGACACAGGAGAAAACTTGGGTAGGAGTC
CTTGCAAAGTTCCCAAAGCTTCTGTTTTTGACAAAACGTCCGTCGTGGTC
ACAATTGTTTCTTCTGACTGCCCACAACCACAATAATCTGTTTGAGGCTT
TTGTGTCTGAGCTAGACTATATGTAGACATTCCGACCGCAGACTTTGAAT
TCGACTTGACACCCTCGGTACAGCAAGGCTTCAGTGTGGATGTGCTGCGC
CAGGAAGAAAAGACAACGGTGAGAAGTCCGACATGGTGCTATTTTCTCAA
ACCAGATTGAACGACTCGCATGATCTGACGTGTCTGGTAGAGTATAACGA
GGTTATGCTGCTGGAGTGCTTGTCAAGTGATGATGCTGTCCGCAAATACT
CATTATTTTTGTGAGGAAGACAAATATGTCAAGAATGGTGTTACGGACAC
GGTTACTGCTTTCCACATGACAGACTCTAGCGTTAACGATGTGAAGGATT
GCTATTAGAACGCATGAGGGATTGATGGCGTTACTTGTGAAGTAGACCGT
CTGGAACCCTGGACTGGAGGAAGTGTTTGTGATTGCTGACAGCGAGTGTT
CAGTAGGGTTGAAGGTTAGTGCAACCTCTANTCAAGAATGGTGTTACGGA
CACGGTTACTGCTTTCCACATGACAGACTCTAGCGTTAACGATGTGAAGG
ATTGCTATTAGAACGCATGAGGGATTGATGGCGTTACTTGTGAAGTAGAC
CGTCTGGAACCCTGGACTGGAGGAAGTGTTTGTGATTGCTGACAGCGAGT
GTTCAGTAGGGTTGAAGGTTAGTGCAACCTCTATTCTCCCAGCGCAGTGT
TTGATGGCAAGTTATGAAATAGCTTCGGTGGTCTTGATGGTATGATGGCT
ACTTTCGACAGAACAGTAATTTTCCAGAATTTCGATGGCATGCTCATTGC
TATTGCGTATCGTCTAGAGAATAACTCTGTTGGTTCCGTGCTAGCTGCCC
TCACTCCTTCAAACCCCAAGCATGAATCTAAGATGGATGTGAACGAGTTT
CAATTTATGCTCATTCACGTGAGGGATTACTTAGTACAACAGCAAAACGA
CTAGGTATGGAGTTGACCGGTAAAATGCATGCTTGTACGGGATGTTCGAT
GTCGAAGGCATTCAAGAAAGGAATTGCTCATGAAGCAAGATACAGATTGG
ACACTAAGTTGGGCAGAGTTTTTGTTGACCTGGGAGGGCGGAAGGACGTT
GCGTCCGTATGGGGTAAACATCNGATTGCTGACAGCGAGTGTTCAGTAGG
GTTGAAGGTTAGTGCAACCTCTATTCTCCCAGCGCAGTGTTTGATGGCAA
GTTATGAAATAGCTTCGGTGGTCTTGATGGTATGATGGCTACTTTCGACA
GAACAGTAATTTTCCAGAATTTCGATGGCATGCTCATTGCTATTGCGTAT
CGTCTAGAGAATAACTCTGTTGGTTCCGTGCTAGCTGCCCTCACTCCTTC
AAACCCCAAGCATGAATCTAAGATGGATGTGAACGAGTTTCAATTTATGC
TCATTCACGTGAGGGATTACTTAGTACAACAGCAAAACGACTAGGTATGG
AGTTGACCGGTAAAATGCATGCTTGTACGGGATGTTCGATGTCGAAGGCA
TTCAAGAAAGGAATTGCTCATGAAGCAAGATACAGATTGGACACTAAGTT
GGGCAGAGTTTTTGTTGACCTGGGAGGGCGGAAGGACGTTGCGTCCGTAT
GGGGTAAACATCACCCCATGATAGTGAAGGATGATTTCACAAGACGTACA
TGGATGTATTTCTTGAAAAATTTAATCAGACGCTGCGAGTGCTTTCCGGA
GTTTCCTCGCAAGTGTGCGTGCTGATGGTATCCCATCATTGGTTGAGATT
GTTAGATCTGACAATGGGGGGGGAGTTTTTCGGAGGAGAATTCGCGTCCG
TTNACCCCATGATAGTGAAGGATGATTTCACAAGACGTACATGGATGTAT
TTCTTGAAAAATTTAATCAGACGCTGCGAGTGCTTTCCGGAGTTTCCTCG
CAAGTGTGCGTGCTGATGGTATCCCATCATTGGTTGAGATTGTTAGATCT
GACAATGGGGGGGGAGTTTTTCGGAGGAGAATTCGCGTCCGTTTGCAACG
AGCTCTTGATTAAGCAAGAGTTCACCCCGGCTTACAGTCCCCAATACAAC
GGTGTTGCAGAGCGTGGTTTGGGACTGATTGAGGCGGCGGCAATGGCTGC
CCGTTTTCAGGCAAAAGTTTTGTTTGGGCATGTGCAATTACCTGAGACTG
ATAGACTATGGGCTGAGGCCATGCACTGGGCTTGCGAAGCAATTCACCAC
ACAGCTTGTACGGAGATGTGGTGAAGCTAGTCATGCTAGACCGTGTCCGT
TTTTGAAACCGGCTGTAGGTGGCAGCGACCGTCTTAGCTGCTGCCGAAGG
GTGAGGCTTGCTTTTATGTCGGTCCTTCAAGAGACCACCCGCGTGACTGT
CATAGAGTACTTACGAGGGTTGGCACTATTCAGTAGAGTCGGAGAGTCAG
GAAGGGTTGGATGAAGAGTTGGTTGAGTCGGGAGGGCAGGAGGTAGAATC
GGAGTCATTTTCCCCTCTACGCACGTTCCATCCAATCGTCGTGCGCGGCG
TGAGCTTGCTAGTTACAACACTGCTGCGAATGAGAATGTTGAAGTCAGAG
AAGGCAGAACCCGTGCGCAAACTCGGGCCGTAAACCAGCAGAGCGTATCC
GGTCTCATGGCCAATCTAGGAC
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Coding sequence (CDS) from alignment at Scaffold_344:155872..162243-

>EsuBft103_15a-0001 ID=EsuBft103_15a-0001|Name=EsuBft103_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=453bp|location=Sequence derived from alignment at Scaffold_344:155872..162243- (Ectocarpus subulatus male Bft15b)
ATGTGGATGACCCACCTCCGGGTGATTCGCAGGATGTTATTGGTGGTGGA
GTCCTCTGTTCCAGTAGCTGCTGCACCCGGAAGCGGCGGAACAGAGTACG
CTGGTGCGCATCAATCGGATGTCACTGGCAGGACTGCGGGAGGACTGCGG
GAGGCTGCCATCGCTTCTGCAGGCCAAGTCGGGTGGGCGAGGCCAGGATT
AGTCGGGCCGTGCTGCGAGAGGCGCAGCAGGTGCGGCGGGATTTGCGCGT
GGGTAGAGTCGGAGAGTCAGGAAGGGTTGGATGAAGAGTTGGTTGAGTCG
GGAGGGCAGGAGGTAGAATCGGAGTCATTTTCCCCTCTACGCACGTTCCA
TCCAATCGTCGTGCGCGGCGTGAGCTTGCTAGTTACAACACTGCTGCGAA
TGAGAATGTTGAAGTCAGAGAAGGCAGAACCCGTGCGCAAACTCGGGCCG
TAA
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