EsuBft103_14a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft103_14a-0001
Unique Name	EsuBft103_14a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_344	contig	Scaffold_344:154911..155715 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	4558.Sb07g003556.1
ProteomeId	EsuBft103_14
Protein domains	IPR013103
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	1
Max annot lvl	35493\|Streptophyta
Length	805
Hectar predicted targeting category	other localisation
Evalue	1.7e-32
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,37YYP@33090\|Viridiplantae,3GQD7@35493\|Streptophyta,3M3FD@4447\|Liliopsida,3IKKZ@38820\|Poales
Date last modified	2016-06-13
Date creation	2016-06-13
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003824

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft103_14a	EsuBft103_14a	Ectocarpus subulatus male Bft15b	gene	Scaffold_344 154911..155715 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft103_14a-0001-exon	EsuBft103_14a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_344 154911..155715 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft103_14a-0001-exon	agat-three_prime_utr-377	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_344 154911..154947 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft103_14a-0001-cds	EsuBft103_14a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_344 154948..155715 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft103_14a-0001	EsuBft103_14	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_344 154948..155715 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_344:154911..155715-
coding sequence from alignment at Scaffold_344:154911..155715-

spliced messenger RNA

>EsuBft103_14a-0001 ID=EsuBft103_14a-0001|Name=EsuBft103_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=805bp|location=Sequence derived from alignment at Scaffold_344:154911..155715- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCAGAGTTTGAAGGCTTGTTAAGAGCAGGAATGTTCGCGTTAGC
AGTAAAGGCCCCGATAGGCTGTAACGTGACAAATGCTAGATGGGTCTATA
AATGGAGAGCAGACAAAACAGGCAAGATAGTGAAGGCCAAGGCTAGGCTT
GTAGCGAAGGGCTTCAAGCAGAAGTATGGTGTGGATTATCTTGAGACTTT
CTCGCCTACTGCAAATGCTGCATCGTTGGTAGCATTGGCATGCAAGTATG
ATTTGGAATTTCTTCACTTTGACATTGAGCAAGCGTTTGTTCAGTCGGAA
TTGGATCATGAGGTGTTCATGAAGATGCCTCCTGGCTGCGAGTCGATGTC
AGGAAAGGTCCGTTTAGACAAGAGTTTGGAGGGACTGAGGCAGGCATGTA
GAACATTTCTCAAGAGATTTGTGTCGGACCTGAAGTGGATTAGTGTCGAA
CAATCTCTATCTGACCCCTGTGTTCTGCGTTTCATGATGAGAAACGAGGT
GATGGGTATGATCGCGATTCATGTGGATGACTTGCTGTATGGAGGAATTG
AGAGTCTTGCCAAGATAGTTGTGCAAGCGCTAGGTGACTCTTTTCACACG
AAGAATTTTGGCGAGGTCAAGTTCTTTCATGGTTGCGCATTTAGTCGCGA
CCGCGAGGCTGGCAAGATTGAGATGTCTCAAGAGCGTTGCGTCAGGAGTC
TCGAGAGATTCAATATTTGTCGCACCAGCTCGACCCTGCTCCCCCTGCTA
GTGTTTACAGGTCTGTGATGGAGGAGGGGGCAGGAGATGTGCCGTTCCGA
GAGGT

protein sequence of EsuBft103_14a-0001

>EsuBft103_14 ID=EsuBft103_14|Name=EsuBft103_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=255bp
MSAEFEGLLRAGMFALAVKAPIGCNVTNARWVYKWRADKTGKIVKAKARL
VAKGFKQKYGVDYLETFSPTANAASLVALACKYDLEFLHFDIEQAFVQSE
LDHEVFMKMPPGCESMSGKVRLDKSLEGLRQACRTFLKRFVSDLKWISVE
QSLSDPCVLRFMMRNEVMGMIAIHVDDLLYGGIESLAKIVVQALGDSFHT
KNFGEVKFFHGCAFSRDREAGKIEMSQERCVRSLERFNICRTSSTLLPLL
VFTGL

mRNA from alignment at Scaffold_344:154911..155715-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft103_14a-0001 ID=EsuBft103_14a-0001|Name=EsuBft103_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=805bp|location=Sequence derived from alignment at Scaffold_344:154911..155715- (Ectocarpus subulatus male Bft15b)
ATGTCTGCAGAGTTTGAAGGCTTGTTAAGAGCAGGAATGTTCGCGTTAGC
AGTAAAGGCCCCGATAGGCTGTAACGTGACAAATGCTAGATGGGTCTATA
AATGGAGAGCAGACAAAACAGGCAAGATAGTGAAGGCCAAGGCTAGGCTT
GTAGCGAAGGGCTTCAAGCAGAAGTATGGTGTGGATTATCTTGAGACTTT
CTCGCCTACTGCAAATGCTGCATCGTTGGTAGCATTGGCATGCAAGTATG
ATTTGGAATTTCTTCACTTTGACATTGAGCAAGCGTTTGTTCAGTCGGAA
TTGGATCATGAGGTGTTCATGAAGATGCCTCCTGGCTGCGAGTCGATGTC
AGGAAAGGTCCGTTTAGACAAGAGTTTGGAGGGACTGAGGCAGGCATGTA
GAACATTTCTCAAGAGATTTGTGTCGGACCTGAAGTGGATTAGTGTCGAA
CAATCTCTATCTGACCCCTGTGTTCTGCGTTTCATGATGAGAAACGAGGT
GATGGGTATGATCGCGATTCATGTGGATGACTTGCTGTATGGAGGAATTG
AGAGTCTTGCCAAGATAGTTGTGCAAGCGCTAGGTGACTCTTTTCACACG
AAGAATTTTGGCGAGGTCAAGTTCTTTCATGGTTGCGCATTTAGTCGCGA
CCGCGAGGCTGGCAAGATTGAGATGTCTCAAGAGCGTTGCGTCAGGAGTC
TCGAGAGATTCAATATTTGTCGCACCAGCTCGACCCTGCTCCCCCTGCTA
GTGTTTACAGGTCTGTGATGGAGGAGGGGGCAGGAGATGTGCCGTTCCGA
GAGGT

Coding sequence (CDS) from alignment at Scaffold_344:154911..155715-

>EsuBft103_14a-0001 ID=EsuBft103_14a-0001|Name=EsuBft103_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=768bp|location=Sequence derived from alignment at Scaffold_344:154911..155715- (Ectocarpus subulatus male Bft15b)
ATGTCTGCAGAGTTTGAAGGCTTGTTAAGAGCAGGAATGTTCGCGTTAGC
AGTAAAGGCCCCGATAGGCTGTAACGTGACAAATGCTAGATGGGTCTATA
AATGGAGAGCAGACAAAACAGGCAAGATAGTGAAGGCCAAGGCTAGGCTT
GTAGCGAAGGGCTTCAAGCAGAAGTATGGTGTGGATTATCTTGAGACTTT
CTCGCCTACTGCAAATGCTGCATCGTTGGTAGCATTGGCATGCAAGTATG
ATTTGGAATTTCTTCACTTTGACATTGAGCAAGCGTTTGTTCAGTCGGAA
TTGGATCATGAGGTGTTCATGAAGATGCCTCCTGGCTGCGAGTCGATGTC
AGGAAAGGTCCGTTTAGACAAGAGTTTGGAGGGACTGAGGCAGGCATGTA
GAACATTTCTCAAGAGATTTGTGTCGGACCTGAAGTGGATTAGTGTCGAA
CAATCTCTATCTGACCCCTGTGTTCTGCGTTTCATGATGAGAAACGAGGT
GATGGGTATGATCGCGATTCATGTGGATGACTTGCTGTATGGAGGAATTG
AGAGTCTTGCCAAGATAGTTGTGCAAGCGCTAGGTGACTCTTTTCACACG
AAGAATTTTGGCGAGGTCAAGTTCTTTCATGGTTGCGCATTTAGTCGCGA
CCGCGAGGCTGGCAAGATTGAGATGTCTCAAGAGCGTTGCGTCAGGAGTC
TCGAGAGATTCAATATTTGTCGCACCAGCTCGACCCTGCTCCCCCTGCTA
GTGTTTACAGGTCTGTGA