EsuBft103_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft103_10a-0001
Unique NameEsuBft103_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_344contigScaffold_344:86376..87026 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft103_10
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length65
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft103_10aEsuBft103_10aEctocarpus subulatus male Bft15bgeneScaffold_344 86376..87026 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_10a-0001-exonEsuBft103_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_344 86376..87026 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_10a-0001-cdsEsuBft103_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_344 86376..87026 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_10a-0001EsuBft103_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_344 86376..87026 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft103_10a-0001 ID=EsuBft103_10a-0001|Name=EsuBft103_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=651bp|location=Sequence derived from alignment at Scaffold_344:86376..87026- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGACTGCGCGCATCTTCAACGAGGGCCACATCGCCACGGGCAGCTT
CTCGTACAACCATCCTCTGTTCGAGAAGGAGGCGGCAGCTTTCAACGACA
TCAAAGTCGACGGGAAACCGGTGTGGCAGAAACAACCACCCGGCCCCTCT
ACACTGCACAACAGTGTCGTCATCAACGACCGCTTCCCTTCGCTGGCCCC
GTTCTTGGGACCGGTGGAGAAGAAGTTGTGCAAGCCGAGACCCACGACCG
ACCGCTTGTTCCTCAAGCAGAGGGCGCAACAGTACACGACGTCCGGTCGG
AGACACCGCGACGGCAAGAACGGGCCGTGGCGGATGTGCGTCACCATCCA
CGACCCGGCCGCACCCCCACACGCCAAGCAGCTGGAGATTGGGTTGGCGG
ACGGCAGCAAGGCGAAGGGTGACGGCGCCGTCAACCCGTTCCAGACCAAA
GCTGACGGTACACCGGACTCTCGCCGCTTCGACTGCCCGTCGGGGTCGTA
CCACCTCATGGACGAGGTGGCCACCGGCACCGTTTCTCACGCGTCCCACA
AGGAATCGTGGACGACGAGAGCAAGCGGGTCTTCCTGCGACAGGAGCGGC
ACTGGCAGTGTGGAAACTGCAGATGCAAGCCCCCGGAGAGTGCCACGATG
A
back to top

protein sequence of EsuBft103_10a-0001

>EsuBft103_10 ID=EsuBft103_10|Name=EsuBft103_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=216bp
MTTARIFNEGHIATGSFSYNHPLFEKEAAAFNDIKVDGKPVWQKQPPGPS
TLHNSVVINDRFPSLAPFLGPVEKKLCKPRPTTDRLFLKQRAQQYTTSGR
RHRDGKNGPWRMCVTIHDPAAPPHAKQLEIGLADGSKAKGDGAVNPFQTK
ADGTPDSRRFDCPSGSYHLMDEVATGTVSHASHKESWTTRASGSSCDRSG
TGSVETADASPRRVPR
back to top

mRNA from alignment at Scaffold_344:86376..87026-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft103_10a-0001 ID=EsuBft103_10a-0001|Name=EsuBft103_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=651bp|location=Sequence derived from alignment at Scaffold_344:86376..87026- (Ectocarpus subulatus male Bft15b)
ATGACGACTGCGCGCATCTTCAACGAGGGCCACATCGCCACGGGCAGCTT
CTCGTACAACCATCCTCTGTTCGAGAAGGAGGCGGCAGCTTTCAACGACA
TCAAAGTCGACGGGAAACCGGTGTGGCAGAAACAACCACCCGGCCCCTCT
ACACTGCACAACAGTGTCGTCATCAACGACCGCTTCCCTTCGCTGGCCCC
GTTCTTGGGACCGGTGGAGAAGAAGTTGTGCAAGCCGAGACCCACGACCG
ACCGCTTGTTCCTCAAGCAGAGGGCGCAACAGTACACGACGTCCGGTCGG
AGACACCGCGACGGCAAGAACGGGCCGTGGCGGATGTGCGTCACCATCCA
CGACCCGGCCGCACCCCCACACGCCAAGCAGCTGGAGATTGGGTTGGCGG
ACGGCAGCAAGGCGAAGGGTGACGGCGCCGTCAACCCGTTCCAGACCAAA
GCTGACGGTACACCGGACTCTCGCCGCTTCGACTGCCCGTCGGGGTCGTA
CCACCTCATGGACGAGGTGGCCACCGGCACCGTTTCTCACGCGTCCCACA
AGGAATCGTGGACGACGAGAGCAAGCGGGTCTTCCTGCGACAGGAGCGGC
ACTGGCAGTGTGGAAACTGCAGATGCAAGCCCCCGGAGAGTGCCACGATG
A
back to top

Coding sequence (CDS) from alignment at Scaffold_344:86376..87026-

>EsuBft103_10a-0001 ID=EsuBft103_10a-0001|Name=EsuBft103_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=651bp|location=Sequence derived from alignment at Scaffold_344:86376..87026- (Ectocarpus subulatus male Bft15b)
ATGACGACTGCGCGCATCTTCAACGAGGGCCACATCGCCACGGGCAGCTT
CTCGTACAACCATCCTCTGTTCGAGAAGGAGGCGGCAGCTTTCAACGACA
TCAAAGTCGACGGGAAACCGGTGTGGCAGAAACAACCACCCGGCCCCTCT
ACACTGCACAACAGTGTCGTCATCAACGACCGCTTCCCTTCGCTGGCCCC
GTTCTTGGGACCGGTGGAGAAGAAGTTGTGCAAGCCGAGACCCACGACCG
ACCGCTTGTTCCTCAAGCAGAGGGCGCAACAGTACACGACGTCCGGTCGG
AGACACCGCGACGGCAAGAACGGGCCGTGGCGGATGTGCGTCACCATCCA
CGACCCGGCCGCACCCCCACACGCCAAGCAGCTGGAGATTGGGTTGGCGG
ACGGCAGCAAGGCGAAGGGTGACGGCGCCGTCAACCCGTTCCAGACCAAA
GCTGACGGTACACCGGACTCTCGCCGCTTCGACTGCCCGTCGGGGTCGTA
CCACCTCATGGACGAGGTGGCCACCGGCACCGTTTCTCACGCGTCCCACA
AGGAATCGTGGACGACGAGAGCAAGCGGGTCTTCCTGCGACAGGAGCGGC
ACTGGCAGTGTGGAAACTGCAGATGCAAGCCCCCGGAGAGTGCCACGATG
A
back to top