EsuBft1037_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1037_8a-0001
Unique NameEsuBft1037_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_100contigScaffold_100:59110..60688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1037_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length94
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1037_8aEsuBft1037_8aEctocarpus subulatus male Bft15bgeneScaffold_100 59110..60688 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1037_8a-0001EsuBft1037_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_100 59141..59982 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1037_8a-0001-exonagat-exon-59833Ectocarpus subulatus male Bft15bexonScaffold_100 59110..59293 +
EsuBft1037_8a-0001-exonEsuBft1037_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_100 59812..60095 +
EsuBft1037_8a-0001-exonagat-exon-59832Ectocarpus subulatus male Bft15bexonScaffold_100 60216..60688 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1037_8a-0001-exonagat-five_prime_utr-221Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_100 59110..59140 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1037_8a-0001-cdsEsuBft1037_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_100 59141..59293 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1037_8a-0001-exonagat-three_prime_utr-360Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_100 59983..60095 +
EsuBft1037_8a-0001-exonagat-three_prime_utr-361Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_100 60216..60688 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1037_8a-0001 ID=EsuBft1037_8a-0001|Name=EsuBft1037_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=941bp|location=Sequence derived from alignment at Scaffold_100:59110..60688+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGCCGCCATCGCGACACCGCCCCGGAGCCAATGCCGAGCATGGCCCTCG
CTGCTGCGAAGAAGGCTGCGGCGGAGCATCCGGGTCTGTGTGGGGTTTAC
CACGCTCACATAATAGCAGCCGTGCGGACCGAGGACGTGACAAGTCGATC
GGGCTCCACCGCTGCCAACAAGTTCCGCAACCAAGCGTGCTACGACGGGG
CCATGGCAATGAATGCGCGTGGGAAGGGAGTGCAGCTGAAGAGAGCAGAG
TGCTTCACGCATGCCGGCCGGGCAGTGTGGCCTGGAAATGAGGAAATGGA
GGCCTCTGTGGTGGAGGCAAGAACGTCGTGGATGAAGGCCGGCTGTTTTG
TATGAGGACCTGCGGCCGAATGTATGTCCGTTTTCCGTGCTTTCATTTTG
TCTTGGTTATTTTTTATGCCGCAGCACTGTCGTCGGGAGATGAGCGTTGT
TGTAGTGATGAAATNACTTATGCATGTATGCGGATGTGGACGTGGGCTTT
CCAAGAGGGGTGCCGAGAAACAACCGCCCTGTCTTGATGTATGCTTTGAT
TTTTGAAAAAGAACACCGCGTGATGCGTGCGTGATCAGGATGTGAATGGT
AGTCTACCTGATCGGCAGCGCATGAGGGTTGCAGCTGCACCGGTGGCTAC
ACCCCGGTCTACATATACGGGCCCAAGATTGTCGGACGACGTCGTAGTCT
TGATTCGTTATTTGGCTTTTTTTGTTGCTTTGTTAGAGAGCGCTTGCCTG
CGAGAGCGTTGGACTCTTTTGTTTATTGTCATGCCCGGCAATGACACCAG
CGATGCCTGGCGTATAGTCTTTCTCGAAGTGTGCACCCTTGTGGGGTAGT
TGGCCTGTGACCATGGTAGACGTGCGCGTCACACGGGTACGGATATTAGA
TGGCTCTGACCAGAGGCTGCCGCTGTTTTTTCATGTGAAGA
back to top

protein sequence of EsuBft1037_8a-0001

>EsuBft1037_8 ID=EsuBft1037_8|Name=EsuBft1037_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=107bp
MPSMALAAAKKAAAEHPGLCGVYHAHIIAAVRTEDVTSRSGSTAANKFRN
QACYDGAMAMNARGKGVQLKRAECFTHAGRAVWPGNEEMEASVVEARTSW
MKAGCFV
back to top

mRNA from alignment at Scaffold_100:59110..60688+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1037_8a-0001 ID=EsuBft1037_8a-0001|Name=EsuBft1037_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1579bp|location=Sequence derived from alignment at Scaffold_100:59110..60688+ (Ectocarpus subulatus male Bft15b)
GTGCCGCCATCGCGACACCGCCCCGGAGCCAATGCCGAGCATGGCCCTCG
CTGCTGCGAAGAAGGCTGCGGCGGAGCATCCGGGTCTGTGTGGGGTTTAC
CACGCTCACATAATAGCAGCCGTGCGGACCGAGGACGTGACAAGTCGATC
GGGCTCCACCGCTGCCAACAAGTTCCGCAACCAAGTGAGTATTGCCTGAG
GCCGAGGGGCGGGTGCAGCTGTTGTTGTTTGGTGTTGTTGTTGGAGCAAC
AAGGCTTTGGTTATTGTTGTCTAAGGAGCACGGAGTCAAGAGAGAAAGAA
ACGAGCTGCTGGTCCCAGGAAGAGATAAAGCTGTATAGCCGCAGTAGTGT
AATGCTACATTTTAGAGGTGGAACAAACTTCAACGTACGCCGACCCTGCT
GCTGTCGTAGCATATGCATATAGGTACACCTTCCGTTCGCCCGACGCTAC
TGCTGTCGTATGCATATGCATAGTTACACCATCCCATCCTGCTGTTTGTT
AGACCCGCTCTGCCCAAACTGCACACAGCAGTGATCGCTGACGGGCAAAC
TCCTCGCTTTGTCGAAGTTCGTTTCAACCTCAGCTCTCTCCGCCCATTTG
AACGTATGTGTGCATGCATACAGCACAAAACTGTAGACTAGAGGTCTAAT
ACTACTGCCGTGCATCATGTGTGTATTCGGAACAATGAATGCAATGCCAC
AGGCGTGCTACGACGGGGCCATGGCAATGAATGCGCGTGGGAAGGGAGTG
CAGCTGAAGAGAGCAGAGTGCTTCACGCATGCCGGCCGGGCAGTGTGGCC
TGGAAATGAGGAAATGGAGGCCTCTGTGGTGGAGGCAAGAACGTCGTGGA
TGAAGGCCGGCTGTTTTGTATGAGGACCTGCGGCCGAATGTATGTCCGTT
TTCCGTGCTTTCATTTTGTCTTGGTTATTTTTTATGCCGCAGCACTGTCG
TCGGGAGATGAGCGTTGTTGTAGTGATGAAATNACTGTTTTGTATGAGGA
CCTGCGGCCGAATGTATGTCCGTTGTCCGTGCTTTCATTTTGTCTTGATT
ATTTTTTATGCCGCAGCACTGTCGTCGGGAGATGCGCGTTGTTGTCGTGA
TGAAAGTATGCATGTATGCGGATGTGGACGTGGGCTTTCCAAGAGGGGTG
CCGAGAAACAACCGCCCTGTCTTGATGTATGCTTTGATTTTTGAAAAAGA
ACACCGCGTGATGCGTGCGTGATCAGGATGTGAATGGTAGTCTACCTGAT
CGGCAGCGCATGAGGGTTGCAGCTGCACCGGTGGCTACACCCCGGTCTAC
ATATACGGGCCCAAGATTGTCGGACGACGTCGTAGTCTTGATTCGTTATT
TGGCTTTTTTTGTTGCTTTGTTAGAGAGCGCTTGCCTGCGAGAGCGTTGG
ACTCTTTTGTTTATTGTCATGCCCGGCAATGACACCAGCGATGCCTGGCG
TATAGTCTTTCTCGAAGTGTGCACCCTTGTGGGGTAGTTGGCCTGTGACC
ATGGTAGACGTGCGCGTCACACGGGTACGGATATTAGATGGCTCTGACCA
GAGGCTGCCGCTGTTTTTTCATGTGAAGA
back to top

Coding sequence (CDS) from alignment at Scaffold_100:59110..60688+

>EsuBft1037_8a-0001 ID=EsuBft1037_8a-0001|Name=EsuBft1037_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=324bp|location=Sequence derived from alignment at Scaffold_100:59110..60688+ (Ectocarpus subulatus male Bft15b)
ATGCCGAGCATGGCCCTCGCTGCTGCGAAGAAGGCTGCGGCGGAGCATCC
GGGTCTGTGTGGGGTTTACCACGCTCACATAATAGCAGCCGTGCGGACCG
AGGACGTGACAAGTCGATCGGGCTCCACCGCTGCCAACAAGTTCCGCAAC
CAAGCGTGCTACGACGGGGCCATGGCAATGAATGCGCGTGGGAAGGGAGT
GCAGCTGAAGAGAGCAGAGTGCTTCACGCATGCCGGCCGGGCAGTGTGGC
CTGGAAATGAGGAAATGGAGGCCTCTGTGGTGGAGGCAAGAACGTCGTGG
ATGAAGGCCGGCTGTTTTGTATGA
back to top