EsuBft1037_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1037_6a-0001
Unique NameEsuBft1037_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_100contigScaffold_100:67331..70950 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1037_6
Protein domainsIPR001138
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length92
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Cross References
External references for this mRNA
DatabaseAccession
GO0005515
GO0000981
GO0003824
GO0008270
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1037_6aEsuBft1037_6aEctocarpus subulatus male Bft15bgeneScaffold_100 67331..70950 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1037_6a-0001EsuBft1037_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_100 67363..69092 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1037_6a-0001-exonagat-exon-59828Ectocarpus subulatus male Bft15bexonScaffold_100 67331..67878 -
EsuBft1037_6a-0001-exonEsuBft1037_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_100 69039..69294 -
EsuBft1037_6a-0001-exonagat-exon-59829Ectocarpus subulatus male Bft15bexonScaffold_100 70828..70950 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1037_6a-0001-exonagat-three_prime_utr-358Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_100 67331..67362 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1037_6a-0001-cdsEsuBft1037_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_100 67363..67878 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1037_6a-0001-exonagat-five_prime_utr-219Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_100 69093..69294 -
EsuBft1037_6a-0001-exonagat-five_prime_utr-220Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_100 70828..70950 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1037_6a-0001 ID=EsuBft1037_6a-0001|Name=EsuBft1037_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=927bp|location=Sequence derived from alignment at Scaffold_100:67331..70950- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCATCATTCTCAGCAGCTGACGTTCGGCGAGCAGGCCTGCCGGAACCCTG
TCTTCTCTGCCGTGTTTGTCTACGTCAAGACGCGAAGACAATATTGATCA
CCCTTCCCCGGCGGGTGCGTTCGGGACTCAGCTAGCCCCCCCGGGTCCTT
CCTGACTAGAGCGACTAGAGCAGCAGGGTATCGTCACGCACCTCGAGCAG
TGGGTACGGTCACGGTCGTTTTCGCCGGCTACGTTCAGGGAGCCTTTCGC
GCGTGATAGGATCTCTCTCCAGCTGTCACTATTATAGCGCTTTCGTGACC
CGGAAAAGGGGCCTTCGGGGCTAAGATGGAGCCGAGATCGAACACTCGCC
GCAACTGCGACTACTGCGTCGAGAAAAAGGTGCGCTGCAGCGGCAGAATC
GAAGGAGGGGCGTGCCACTACTGCGCTCGCAAGGACCACGTGTGCATCTT
CAGCCTCAAGCAGAAGCCGGGTCCCAAGTGTAACCGCCACATCGGCGAGA
CACCGCCGTTTCGGGAGGAGTCCTTGGGGGTCGACGCCATCAGCAGCGCC
GCAGCCGCGCTTTCCCTCTCCGGGTCGAAGCCCGGGCTGGCGGCGGCGAT
GGTTTGGTCGCAATCGGCCAAAGGCAAGAGGGGCGGTCGGGGTTCGACGT
CGAGGGCGTTTTCGGCGGCTGAGAAGAGCCCTTTTGCACCCGGGTCCGTC
GGAGACGGCATCGGGAATCGTGACCACGTTATGGACGAGGTGGAGATAAA
CAGTTTTTTGTGTGGTCAACTTTCCGGCATTGCTAGCAGTGTCCAGTTCC
CATGGACCAAATCCGTACGCGACGCTCTGGAGTATGATGTAGTGTTGTCG
CTTTGTCCTGTACGGGCCGTGAGTGGTGACGTTCATGCCCGTTGAGGCAC
TTGAATGCATTTCGAGTGAAACGGGGC
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protein sequence of EsuBft1037_6a-0001

>EsuBft1037_6 ID=EsuBft1037_6|Name=EsuBft1037_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=189bp
MEPRSNTRRNCDYCVEKKVRCSGRIEGGACHYCARKDHVCIFSLKQKPGP
KCNRHIGETPPFREESLGVDAISSAAAALSLSGSKPGLAAAMVWSQSAKG
KRGGRGSTSRAFSAAEKSPFAPGSVGDGIGNRDHVMDEVEINSFLCGQLS
GIASSVQFPWTKSVRDALEYDVVLSLCPVRAVSGDVHAR
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mRNA from alignment at Scaffold_100:67331..70950-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1037_6a-0001 ID=EsuBft1037_6a-0001|Name=EsuBft1037_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3620bp|location=Sequence derived from alignment at Scaffold_100:67331..70950- (Ectocarpus subulatus male Bft15b)
CCATCATTCTCAGCAGCTGACGTTCGGCGAGCAGGCCTGCCGGAACCCTG
TCTTCTCTGCCGTGTTTGTCTACGTCAAGACGCGAAGACAATATTGATCA
CCCTTCCCCGGCGGGTGCGTTCGGTGAGTGAGTCAGTCGCATGGCCTGGC
GGAAAGGGGGTTGTCAAGAGAGCAGGAAACGAAGGCGAGGATGGATGATG
ATGGCGGTGCTTCTGCTGTTGTCGTGCGGCCAAGAGGCTGTGTGTATGGG
CATGTGCTTTCGCTTCTCGCACAAGGGACAACAGGAAAAGGGTGGTAGGA
GGCATGCCACAAATGCCAGCGACAGGGGGCGGTGTGTGATGTTGTGCGAT
TCAAACACTATAATGGTGTGGTCCCACACCAGATGGCAAGGCAAAGCCAG
CACACACACCCGCAGCTCACGCCAAAACGCACCAAGCACGCAAGTTACAA
TAGCCAGCACAAGCACCCCGGCCGTGCAGAGTGCCTTGACAACTAGTACA
AGCACACCGGAGCGAACCATGCTTTGGGAGTAGGTATACCCCAATACGCC
GGGCTCACCTTGGGCTGCATCGGCATGCACGATCTACACAGCTAGCGCCG
CCGTTCGAGTCGAAGAGCGAGAAAATGCGTATTTTTGCAGACGGGGCTGC
GCCAGCAGCACAGCAGCAGCAGTGTGACCTCACGTGAGGAGCGATTGGTG
CATGTACACATGGTTTTGGAGGAGCGCACACGGCTAGATAGTGCCTGCGC
GTACGAGGGTAGGATGTGGTGTGGAGTACTGCAGTTTCACTGTTCCTCCC
CTCTCAGAGAACAGGCGGACCCAGACACCACCTGGAAATTTCTCTCTTGG
TGTTGTTTTGCTCTAGTTCTTTTTTTTTTTGGTCAGGGGACTTGTCCTGT
ACAGACCACCATGCTCCTGGCACGACGTATACCACTCGTGTGTTCTGTAC
TACAGCGTACGTACTCGGAGTTACAGCAGTTGCATGCGAAAACAAAGACG
AGCCCTCCCTACGCTTTCTTTGTTATACATGCGCCAAAGTCCGTCCCGTC
GCTCGCTCTTGTATTTCGCTCGGATGCAACATAGTCCAACGTGTGTAGCG
GTGCAGGTCAAGAGACCCTGAGTAGTTCGAAAGGGCACAACGAGCAAAAA
TAAGCACATGAAAGATTCTACTTCGAAGAACTGTAATGTACATAGCGTCC
AAGTGATCCCTCCGACTGGGATCATGAACGAACAATACTGCTGTCATCAC
GGGTTATGCACGATGACAACAAAGCGGTGGAGTTTCAAGCTCGATCAGCT
CACACCGATATATTGTCCTGTCTTCGTGTTTTCTTTTTTTTTTCCGACTA
GGAAGCCCAGCGAACCTGAACGAACCAAACAGAACAAATTGTTCCAGTAC
TTGTACAGCAGCAGTCTTTTTGCACACAAAAGCAGTCTCCCACCCGTACT
CGTCGCCCGTATGGAGTGTTGAGAGCCTGCCTACGGAAGAGGTAATGAGT
GAGTGGCCTGTAGAAAATGCTTGAGGTTGGCAGCAATAACAGCAGGAATC
TCTGAGCACACGCGCACTTACCACATCACACCCCTTGACAAGCGCGCTAT
CCCCATCGCTCCTTCCCTTCTACCGAACGTTGTACAACCACGGGGACAAC
GACCAGGGACTCAGCTAGCCCCCCCGGGTCCTTCCTGACTAGAGCGACTA
GAGCAGCAGGGTATCGTCACGCACCTCGAGCAGTGGGTACGGTCACGGTC
GTTTTCGCCGGCTACGTTCAGGGAGCCTTTCGCGCGTGATAGGATCTCTC
TCCAGCTGTCACTATTATAGCGCTTTCGTGACCCGGAAAAGGGGCCTTCG
GGGCTAAGATGGAGCCGAGATCGAACACTCGCCGCAACTGCGACTACTGC
GTCGAGAAAAAGGTGAGAAAATTGCACGAGAGAAACTGCGGTGTTTGTAC
ACGTACCCGCTTCGTTGGTCTCTTACCCGCCTCGTCTGATGCGGACGCCC
CCTTCTGGGAGAACGCAGCGAGGATGCCAGCTGGAGCTAGCCATATAGTG
GGATGCTGTATGTATGCACCCACCGACCGACCATCACAACACAGAAAGTA
ATTTAGTCACGCCCTTCTTTCACCACCCCCCCCTCGGTCTTTGCCATCGC
CATCGGGATTGTGTTTTCGTCGCTTGCCAACGACGTTGTAACACAAGCCA
ATTCACTTCGTGAACTCGGCAACCAGGTTACCGTTTTTTTTTTTACCTCG
TTTTTTTTTTTTTTGGCGGTAACCATAATGGTGGTCGAGTAGATCATGTT
GTGCGGGGTGGAGAACCCTCACTCCGCGCAAGGGGGATGATCGCACCACG
TTGTGTTAAAATGGTCAAGCACCCTCGAGGCAGTTACACAGTGCTTACAA
CTGTCTCTGGAAGTGAAAGCACCAGAAAATAAATTAATTCATACGCAGCT
GTCATCCGTACGCAAGGAAGTAAGCACGAGATGCCGAAAACCCTCAGCAG
GATGCAGCCCACCCTTCATGCGACTCGCCGAATATCTCACGGCGCTTCGC
GCTTGGTGATGTGAGAGCCTGGTCCGGTGAGAACCCGGCGTGCTCCGTCC
CAGCTCTGTAGGGATGCGAGGTCAATGGTCTAACGACTACGGCATGCACG
ACTTTGAGTACACCCCCGTCTTTCACCAGCTCAGGACATGTTCCGCTGTC
CGCCTTCCAGTGCGACCTAGACACATTAACAGTGTCATCTGATGCTGTAT
GGCGGGGTGCCCATGGCAGGAGGGCATCCCTTTGTTATCGCACAACTCGC
TTTTGTTCTTGGCGGGGAGGGGGCGCTGATACGGCTGCGGCGTTTTCTTG
ATCAGTCCAGCGACCCACCCCCTTGAAGGAGGGAAGGGTGTCGTACGCAG
CAAGACTCAACGTATGCAGCCCGTGAAAAGATTGCCCTGGCGTTGGTGTT
GTCTGTGCAAGCAGTACAGTAGGAACGGCGCTCTGTCTCAAAAGGTAGGC
AACTACGTCTAAGCAATCAAACTAGTTAGGGTCCCCCCACCCCGTTCCCG
CAAATCCCCCAAACGCGAACAGGTGCGCTGCAGCGGCAGAATCGAAGGAG
GGGCGTGCCACTACTGCGCTCGCAAGGACCACGTGTGCATCTTCAGCCTC
AAGCAGAAGCCGGGTCCCAAGTGTAACCGCCACATCGGCGAGACACCGCC
GTTTCGGGAGGAGTCCTTGGGGGTCGACGCCATCAGCAGCGCCGCAGCCG
CGCTTTCCCTCTCCGGGTCGAAGCCCGGGCTGGCGGCGGCGATGGTTTGG
TCGCAATCGGCCAAAGGCAAGAGGGGCGGTCGGGGTTCGACGTCGAGGGC
GTTTTCGGCGGCTGAGAAGAGCCCTTTTGCACCCGGGTCCGTCGGAGACG
GCATCGGGAATCGTGACCACGTTATGGACGAGGTGGAGATAAACAGTTTT
TTGTGTGGTCAACTTTCCGGCATTGCTAGCAGTGTCCAGTTCCCATGGAC
CAAATCCGTACGCGACGCTCTGGAGTATGATGTAGTGTTGTCGCTTTGTC
CTGTACGGGCCGTGAGTGGTGACGTTCATGCCCGTTGAGGCACTTGAATG
CATTTCGAGTGAAACGGGGC
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Coding sequence (CDS) from alignment at Scaffold_100:67331..70950-

>EsuBft1037_6a-0001 ID=EsuBft1037_6a-0001|Name=EsuBft1037_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=570bp|location=Sequence derived from alignment at Scaffold_100:67331..70950- (Ectocarpus subulatus male Bft15b)
ATGGAGCCGAGATCGAACACTCGCCGCAACTGCGACTACTGCGTCGAGAA
AAAGGTGCGCTGCAGCGGCAGAATCGAAGGAGGGGCGTGCCACTACTGCG
CTCGCAAGGACCACGTGTGCATCTTCAGCCTCAAGCAGAAGCCGGGTCCC
AAGTGTAACCGCCACATCGGCGAGACACCGCCGTTTCGGGAGGAGTCCTT
GGGGGTCGACGCCATCAGCAGCGCCGCAGCCGCGCTTTCCCTCTCCGGGT
CGAAGCCCGGGCTGGCGGCGGCGATGGTTTGGTCGCAATCGGCCAAAGGC
AAGAGGGGCGGTCGGGGTTCGACGTCGAGGGCGTTTTCGGCGGCTGAGAA
GAGCCCTTTTGCACCCGGGTCCGTCGGAGACGGCATCGGGAATCGTGACC
ACGTTATGGACGAGGTGGAGATAAACAGTTTTTTGTGTGGTCAACTTTCC
GGCATTGCTAGCAGTGTCCAGTTCCCATGGACCAAATCCGTACGCGACGC
TCTGGAGTATGATGTAGTGTTGTCGCTTTGTCCTGTACGGGCCGTGAGTG
GTGACGTTCATGCCCGTTGA
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