EsuBft1037_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1037_3a-0001
Unique NameEsuBft1037_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_100contigScaffold_100:85684..87686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1037_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length103
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1037_3aEsuBft1037_3aEctocarpus subulatus male Bft15bgeneScaffold_100 85684..87686 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1037_3a-0001EsuBft1037_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_100 85684..86775 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1037_3a-0001-exonagat-exon-59820Ectocarpus subulatus male Bft15bexonScaffold_100 85684..85866 +
EsuBft1037_3a-0001-exonagat-exon-59819Ectocarpus subulatus male Bft15bexonScaffold_100 86674..86816 +
EsuBft1037_3a-0001-exonEsuBft1037_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_100 86976..87686 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1037_3a-0001-cdsEsuBft1037_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_100 85684..85866 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1037_3a-0001-exonagat-three_prime_utr-354Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_100 86776..86816 +
EsuBft1037_3a-0001-exonagat-three_prime_utr-355Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_100 86976..87686 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1037_3a-0001 ID=EsuBft1037_3a-0001|Name=EsuBft1037_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1037bp|location=Sequence derived from alignment at Scaffold_100:85684..87686+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTACCGTGCACCTACTGGTATGTACATTTTGGTACGTTTCGCATTCC
CCCCCTTTCTAATATCTACCAGTCGGCGAGGGAGAGCTGCGCTGCTGGGT
CGAAAGGGGGGCCGCGGTGTGCTTGGAAACATGGGTCAGCAATAATTGAC
ACAAGGCAAGGACCAAGCGGTGCCATAACAAAGAATCGAACCTCGATGCT
GGCGACAAACCTCATGCCGGGGTCGCCGCACATCCACTTCCTCTTTCTCC
CGGTGGCGCACTACCGCTCATCTCACTCTGAGTGAATGCAGACACGCCGA
TCAAGGGCCGCTGCTGGTCGCGTAAGGACAGGGCACGATCCTGGACGCCT
TCATCGTGGCATTGAGCCGAGCATGCGTTGATGGAGAAGACCTTTGGTAT
GCATCTACTCTTGAGCTACAGCTCGTGTCGCTGGAGTTTTGCCGGGTGTG
CAGAAGTATCCCGACCTTGCACGTTCGTGTCAACCAGGAAACGCCTCGTA
GCTTGTGGCATCCTTGGAAGTCAAACACCACACCGACAACCACACTGTGG
CTCCTCGAATCTCGGGCCGCGTGCCGGTGGTGTCGGCTTTTGGTTTGAAG
TGATCACGTTCGATGAAGGTTCTGCAGCAGATTTCTGCCATTGAGCCGTT
GTCGAGCTTAGAGCTGCAGCTGGCGTATTCTTCGACTGTAGGTAGCCTCG
AATCGATGTTTTGGCCTCAAGGGCTCAAATGGTTGGTCTTTGGTTTGGAT
ACTGCCGTGGATACGGTGCCGTGGCCGGCGTTCCAACGCTACAAACTTTA
ACGGTTCGGACATTTGTTAACAATCCATGACCGGAGTCGTATGGCCGGCC
GCTCTGCAGGAGTTGTTCGTTGGGAATGGTTTCAATCAGTCAATTGCCGA
AGTCGTCTGGCCGGCCTCACTGCAAAAGCTATGGTTTGGGGCGCGCTTTA
ACCGACCTATTGTAGGAGTCGAGTGGCCGGGCTTCCTGCAAGACCTATGG
GTTGGGGATTGTTTCGATTAGCCCATAGTCGGGGTCG
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protein sequence of EsuBft1037_3a-0001

>EsuBft1037_3 ID=EsuBft1037_3|Name=EsuBft1037_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=94bp
MVPCTYWYVHFGTFRIPPLSNIYQSARESCAAGSKGGPRCAWKHGSAIID
TRQGPSGAITKNRTSMLATNLMPGSPHIHFLFLPVAHYRSSHSE
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mRNA from alignment at Scaffold_100:85684..87686+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1037_3a-0001 ID=EsuBft1037_3a-0001|Name=EsuBft1037_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2003bp|location=Sequence derived from alignment at Scaffold_100:85684..87686+ (Ectocarpus subulatus male Bft15b)
ATGGTACCGTGCACCTACTGGTATGTACATTTTGGTACGTTTCGCATTCC
CCCCCTTTCTAATATCTACCAGTCGGCGAGGGAGAGCTGCGCTGCTGGGT
CGAAAGGGGGGCCGCGGTGTGCTTGGAAACATGGGTCAGCAATAATTGAC
ACAAGGCAAGGACCAAGCGGTGCCATAACAAAGGTGAGCGTCGGTGGACT
TCTGCTGGACGTTACCGGTATCACTGACAGACTCACGGGAGGATCATATG
CCGTGCAGGGAGCGCGAGAGGGCAAAAGGCGGGCGATACTTCGAGACGTC
GATGTTGTTGATCGGGGCTGCTTGATACAGTGTCACTGCTACTCTGCAGC
ATGTTCTCACATCGTCATGCTTCTTGATTATAAAGTAACAGGTCCCGTGT
CGCTGTGGTGACAGCAGCAGTACTTTTGTACCCACCCCCAAAACTGCAAC
TTCGCATCCGCATCCCTCCCCTCATATCCACGGCCGATTATCAAGCAGCG
GATCTCTTATGTACTGGGCGCGCGTTAGCCCCCTCGACGCCAGTCCCACG
GAGGTTTGGATGAGCGATGGCGATGGTGGAAAAAACTGCCAGGCAATTTT
TCGTGTAGGCCCGCAGGGTGCCATTTGCCAGAGTTGTTGACGGTGCGTTT
GATTTCGACGGCTGCGGTGCGAAAGTGCGAAACAAGACCGAACCCCACCG
CAACGCACCGTCACACTTCGCGAGATGGAAAAAACCGCAATGCACCTCAC
CATGGGGATTCACAAGGAACCGTAGATGCGGCTTTACGACGGTGCGGTTT
GTCTGACGGTACTCTGTCGCCGAAACCGCGAAAAAACCGCATCAAGGTCA
CCGCGTTTCCACGCAGACGTACACCAGGAGTACTTCTTTTTCACCGACGC
AAACGGAAGGAACATCGTGTTCCCACACCGTGCACGATACCGCCTCGGTC
GCTACACCCCCTGTGCCCAACTTCGCCCCATCCCTGACAGAATCGAACCT
CGATGCTGGCGACAAACCTCATGCCGGGGTCGCCGCACATCCACTTCCTC
TTTCTCCCGGTGGCGCACTACCGCTCATCTCACTCTGAGTGAATGCAGAC
ACGCCGATCAAGGGCCGCTGCTGGTCGCGTAAGGTATGGTTTCGTCTTGT
TACAATCGAATTGAGTTACCCTCTTGGTTCTCCCCGCCTTTGAATTCGCC
CTGGTTGCAAAGCAAACATCAACCATCAAAACCATCGAGCGCGCCATTTT
GTTTTTCTCCTTTTCTCGTACATTTCTCCTACCCATTCTCAGGACAGGGC
ACGATCCTGGACGCCTTCATCGTGGCATTGAGCCGAGCATGCGTTGATGG
AGAAGACCTTTGGTATGCATCTACTCTTGAGCTACAGCTCGTGTCGCTGG
AGTTTTGCCGGGTGTGCAGAAGTATCCCGACCTTGCACGTTCGTGTCAAC
CAGGAAACGCCTCGTAGCTTGTGGCATCCTTGGAAGTCAAACACCACACC
GACAACCACACTGTGGCTCCTCGAATCTCGGGCCGCGTGCCGGTGGTGTC
GGCTTTTGGTTTGAAGTGATCACGTTCGATGAAGGTTCTGCAGCAGATTT
CTGCCATTGAGCCGTTGTCGAGCTTAGAGCTGCAGCTGGCGTATTCTTCG
ACTGTAGGTAGCCTCGAATCGATGTTTTGGCCTCAAGGGCTCAAATGGTT
GGTCTTTGGTTTGGATACTGCCGTGGATACGGTGCCGTGGCCGGCGTTCC
AACGCTACAAACTTTAACGGTTCGGACATTTGTTAACAATCCATGACCGG
AGTCGTATGGCCGGCCGCTCTGCAGGAGTTGTTCGTTGGGAATGGTTTCA
ATCAGTCAATTGCCGAAGTCGTCTGGCCGGCCTCACTGCAAAAGCTATGG
TTTGGGGCGCGCTTTAACCGACCTATTGTAGGAGTCGAGTGGCCGGGCTT
CCTGCAAGACCTATGGGTTGGGGATTGTTTCGATTAGCCCATAGTCGGGG
TCG
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Coding sequence (CDS) from alignment at Scaffold_100:85684..87686+

>EsuBft1037_3a-0001 ID=EsuBft1037_3a-0001|Name=EsuBft1037_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=285bp|location=Sequence derived from alignment at Scaffold_100:85684..87686+ (Ectocarpus subulatus male Bft15b)
ATGGTACCGTGCACCTACTGGTATGTACATTTTGGTACGTTTCGCATTCC
CCCCCTTTCTAATATCTACCAGTCGGCGAGGGAGAGCTGCGCTGCTGGGT
CGAAAGGGGGGCCGCGGTGTGCTTGGAAACATGGGTCAGCAATAATTGAC
ACAAGGCAAGGACCAAGCGGTGCCATAACAAAGAATCGAACCTCGATGCT
GGCGACAAACCTCATGCCGGGGTCGCCGCACATCCACTTCCTCTTTCTCC
CGGTGGCGCACTACCGCTCATCTCACTCTGAGTGA
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