EsuBft1037_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1037_2a-0001
Unique NameEsuBft1037_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_100contigScaffold_100:87688..89143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1037_2
Protein domainsPTHR32134
Protein domainsIPR008615
Ownerapollo_admin@sb-roscoff.fr
Notef-box and fnip repeat-containing protein l60 os:acanthamoeba polyphaga mimivirus gn:mimi [Automatic annotation]
Nb exon2
Length736
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1037_2aEsuBft1037_2aEctocarpus subulatus male Bft15bgeneScaffold_100 87688..89143 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1037_2a-0001-exonagat-exon-59818Ectocarpus subulatus male Bft15bexonScaffold_100 87688..87912 +
EsuBft1037_2a-0001-exonEsuBft1037_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_100 88633..89143 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1037_2a-0001-exonagat-five_prime_utr-216Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_100 87688..87709 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1037_2a-0001-cdsEsuBft1037_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_100 87710..87912 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1037_2a-0001EsuBft1037_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_100 87710..89143 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1037_2a-0001 ID=EsuBft1037_2a-0001|Name=EsuBft1037_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=736bp|location=Sequence derived from alignment at Scaffold_100:87688..89143+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGGGCTCGCTGCAGAAGATGGGGTTTGGGCAAACCTTCAACCAAT
CCATTGTAGGAGTTTTGCGGCCGGTCTCGCTACATAACCTATTTTTCGGC
GATAGCGTCAACCGTCCGATCTCTGCAGTCGAGTGGCCGGTCTCCCTGCA
AGAAGTGTGGTTTGAGGATCATTTTAACCAGCACATTCTCGGAGTCGTAT
GGCCGGACTCGCTGCAAAATCTGGGGCACCAATTCAGCAAGACTATCGTC
GGGGTCGGGTGGCCGGCCTCCCTGCAGAAGCCATCGTTCGGCGATCGCTT
CAACAAGCCCATCGCAAGGGTATCGTGGTCGCCTTTCCTTCAGCAGCTAT
TGTTCGGCTGCTACTTCAACCAAACCATAACCGGGATCAAGTTGCCAGAC
TCCCTGCAACAGCTATCGTTCGGTGACCGCATCAATCAACCCATCGCGGG
AATCGGTTGGCCGGCTTCCCTGCCGCAGCTATGTTTCGGGTGTTTCTTCA
ATCAGCCCATCACCGGGGTGGTTTGGCCGGCTTTACTGCGGCAACTGTCC
TTCGGGGATCAATTCAACCAAGCGATCATTGGGGTCGTGTTGCCGGACTC
CCTGCAACAACTGTCGTTTGGACTCAACTTCACCAACCGATCGAGGGAGT
CGTGTGGCCTGGGTCCCTGCAGCAACTGTCGTTTGGGTACTGCTTTCACC
AGCCCATCGTCGAAGTATTGTGGCCGGCTGGTCTGA
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protein sequence of EsuBft1037_2a-0001

>EsuBft1037_2 ID=EsuBft1037_2|Name=EsuBft1037_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=237bp
MGFGQTFNQSIVGVLRPVSLHNLFFGDSVNRPISAVEWPVSLQEVWFEDH
FNQHILGVVWPDSLQNLGHQFSKTIVGVGWPASLQKPSFGDRFNKPIARV
SWSPFLQQLLFGCYFNQTITGIKLPDSLQQLSFGDRINQPIAGIGWPASL
PQLCFGCFFNQPITGVVWPALLRQLSFGDQFNQAIIGVVLPDSLQQLSFG
LNFTNRSRESCGLGPCSNCRLGTAFTSPSSKYCGRLV
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mRNA from alignment at Scaffold_100:87688..89143+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1037_2a-0001 ID=EsuBft1037_2a-0001|Name=EsuBft1037_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1456bp|location=Sequence derived from alignment at Scaffold_100:87688..89143+ (Ectocarpus subulatus male Bft15b)
ATGGCCGGGCTCGCTGCAGAAGATGGGGTTTGGGCAAACCTTCAACCAAT
CCATTGTAGGAGTTTTGCGGCCGGTCTCGCTACATAACCTATTTTTCGGC
GATAGCGTCAACCGTCCGATCTCTGCAGTCGAGTGGCCGGTCTCCCTGCA
AGAAGTGTGGTTTGAGGATCATTTTAACCAGCACATTCTCGGAGTCGTAT
GGCCGGACTCGCTGCAAAATCTGGGGTTCGGACATTCGTTCAACCAACCC
ATTGTAGTATCGTTGTGGCCGGTCTCGCTACAGAACCCGTCTCGCTGTCT
TATGTGCCTTCGACTCACTGTGCCTGCCACCCGCCGCCGTTATATGTGAC
TGCCACGCCTCTGCGTACCTCCTCTATTCCGTCACCTCCTCTCACGTAGT
ACGTACGTGTGCCGACGCCTCCTTACATATTCACGATTCAGACCTGCTTC
ACAAACACCAGATTTACTGCGTTCAATCTTTCACTTTGTTCCGCTCGTTG
AATTTGGCATTTGTTTATTGATAGACGTTGTTCTACAATTGACAACGTCA
GCCACCTTCTACTTTGGTGGCCTACCAATCAGTCACACATCAACTCCATT
GCCACCCGCAAGCTATCCAATGTACTTCCCATCCATCATCCATCATCCAT
CTATGTAGCCCCCACTTTCATAGCCTGCACTACCATCCTTACCCCTGTTT
CACGTGCTCGTAACCTACCATCAAACAGCTACAACACCTATCGTTCGGGC
TTTGCTTCAACCACACTATCGTGGGAGTTGTGTGGCCGCCCTCCCTGGAA
CAACTATCATTTGGGCGTTTGTTCAACCGCACTATCGCCGAAGTCGTGTG
GCCGGCGTCCCTTCAGCAGCTGTCGTTTGGGTACTTCTTTGACCACCCAT
CGTCGACATCGCGTGGCCGGCCTCCCTTCAGCAGCTATCCTTTAGGCACC
AATTCAGCAAGACTATCGTCGGGGTCGGGTGGCCGGCCTCCCTGCAGAAG
CCATCGTTCGGCGATCGCTTCAACAAGCCCATCGCAAGGGTATCGTGGTC
GCCTTTCCTTCAGCAGCTATTGTTCGGCTGCTACTTCAACCAAACCATAA
CCGGGATCAAGTTGCCAGACTCCCTGCAACAGCTATCGTTCGGTGACCGC
ATCAATCAACCCATCGCGGGAATCGGTTGGCCGGCTTCCCTGCCGCAGCT
ATGTTTCGGGTGTTTCTTCAATCAGCCCATCACCGGGGTGGTTTGGCCGG
CTTTACTGCGGCAACTGTCCTTCGGGGATCAATTCAACCAAGCGATCATT
GGGGTCGTGTTGCCGGACTCCCTGCAACAACTGTCGTTTGGACTCAACTT
CACCAACCGATCGAGGGAGTCGTGTGGCCTGGGTCCCTGCAGCAACTGTC
GTTTGGGTACTGCTTTCACCAGCCCATCGTCGAAGTATTGTGGCCGGCTG
GTCTGA
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Coding sequence (CDS) from alignment at Scaffold_100:87688..89143+

>EsuBft1037_2a-0001 ID=EsuBft1037_2a-0001|Name=EsuBft1037_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=714bp|location=Sequence derived from alignment at Scaffold_100:87688..89143+ (Ectocarpus subulatus male Bft15b)
ATGGGGTTTGGGCAAACCTTCAACCAATCCATTGTAGGAGTTTTGCGGCC
GGTCTCGCTACATAACCTATTTTTCGGCGATAGCGTCAACCGTCCGATCT
CTGCAGTCGAGTGGCCGGTCTCCCTGCAAGAAGTGTGGTTTGAGGATCAT
TTTAACCAGCACATTCTCGGAGTCGTATGGCCGGACTCGCTGCAAAATCT
GGGGCACCAATTCAGCAAGACTATCGTCGGGGTCGGGTGGCCGGCCTCCC
TGCAGAAGCCATCGTTCGGCGATCGCTTCAACAAGCCCATCGCAAGGGTA
TCGTGGTCGCCTTTCCTTCAGCAGCTATTGTTCGGCTGCTACTTCAACCA
AACCATAACCGGGATCAAGTTGCCAGACTCCCTGCAACAGCTATCGTTCG
GTGACCGCATCAATCAACCCATCGCGGGAATCGGTTGGCCGGCTTCCCTG
CCGCAGCTATGTTTCGGGTGTTTCTTCAATCAGCCCATCACCGGGGTGGT
TTGGCCGGCTTTACTGCGGCAACTGTCCTTCGGGGATCAATTCAACCAAG
CGATCATTGGGGTCGTGTTGCCGGACTCCCTGCAACAACTGTCGTTTGGA
CTCAACTTCACCAACCGATCGAGGGAGTCGTGTGGCCTGGGTCCCTGCAG
CAACTGTCGTTTGGGTACTGCTTTCACCAGCCCATCGTCGAAGTATTGTG
GCCGGCTGGTCTGA
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