EsuBft1032_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1032_13a-0001
Unique NameEsuBft1032_13a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_578contigScaffold_578:194488..195697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog13735.ENSPSIP00000001213
ProteomeIdEsuBft1032_13
Protein domainsSSF56672
Protein domainsPTHR19446
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Noteline-1 retrotransposable element orf2 protein os:homo sapiens pe:1 sv:1 [Automatic annotation]
Nb exon2
Max annot lvl33208|Metazoa
Length1170
Hectar predicted targeting categorymitochondrion
Evalue8.48e-16
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3E41I@33213|Bilateria
Date last modified2016-06-13
Date creation2016-06-13
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
EC2.7.7.49
EC3.1.21.4
GO0003964
GO0009036
GO0032199
GO0000737
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1032_13aEsuBft1032_13aEctocarpus subulatus male Bft15bgeneScaffold_578 194488..195697 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1032_13a-0001-exonagat-exon-45755Ectocarpus subulatus male Bft15bexonScaffold_578 194488..195340 -
EsuBft1032_13a-0001-exonEsuBft1032_13a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_578 195381..195697 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1032_13a-0001-exonagat-three_prime_utr-318Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_578 194488..194908 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1032_13a-0001-cdsEsuBft1032_13a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_578 194909..195340 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1032_13a-0001-exonagat-five_prime_utr-188Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_578 195519..195697 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1032_13a-0001EsuBft1032_13Ectocarpus subulatus male Bft15bpolypeptideScaffold_578 194909..195518 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1032_13a-0001 ID=EsuBft1032_13a-0001|Name=EsuBft1032_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1170bp|location=Sequence derived from alignment at Scaffold_578:194488..195697- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCTGTACAAGAAGGGTGACCGGTCCAACTGAAACAACCACAGGTCGATT
TCGCTACTTTCTCACGTAGGTAAGGTCCCCATCAAGATCATCACCAACCG
TCTAAGCGCCTTCTGCGAAGCCAACAACATCCTCCCGGAAGAACAGTGCG
GATTTCGACCCGGGCGATCCACCGTCGACATGCTGTTCGTCGTGCGCCGC
CTCCAGGAGCTGGGGCGGAGAAAGAAAATACCGCTCTACATGTGCTTCGT
CGACTTGAAGAAGGCGTATGATTCGGTGGACCGAGAGATGCTACTGAAGG
CGCTGGCCAGGGCCGGGGAGCTGGGGCGGAGAAAGAAAATACCGCTCTTC
ATGTGCTTCGTCGACTTGAACAAGGCGTATGATTCGGTGGACCGAGATAT
GCTATGGAAGGTGCTGGCCAGGGCCGGGATTCCCGCGAAGCTGATCGAAG
TCATCCGCCAATTCCACGATGGAATGCGGGCCCGGGTGCGCATGGACGAC
GGAGAACTATCGGACTGGTTCTTCGTGACACAGGGCGTGCGACAAGGGTG
TGTGCTATCCCCACTGCTGTTCAACATCTGCTTCGCTGAGGTCCTCGAGG
TCGTTGTCATCCGATTCAGCGAGGATGATGTTGTTCTTCTGCGGAGCCTG
GTGTACTTGAAGGAGGAGAAAACGGAAGCGCGGGGGGGGGGAGGAGACAC
CCCTTTACCGAGCACGGAGGGCAGTATGGGGGATGCTGTATGCCGATGAT
GCCGGCGTCGTATCGAGGTCTGCAGAAGGACTCGCGAGAATGATGACCAT
CATCGTTGAGGTGTTCGGGGAGTTCGGGCTAACGGTGTCGGAGAAGAAGA
CGGAGACGCTCCTGATGCGCGCAAAGGACAAGCCGACTACAACATCACAG
CCCACCCCGCCTCCACCACTGACCATCGAAGCCGCGGGACAGAAATACGC
CCAGACGACCGAGTTCCGGTACCTCGGTGGCCTCGTCAACGAACATGGCG
ACCTCACCCGAGAGATCAACTACAGGAGCAGAGGAGCGTGGGCGTGCCTC
AGGCGATATGGCCGGGAGCTCTTCGACAGACCGCAAGCGCCATTCCGACT
CAAGATCCGCCTGCTCCAGGTGGAGGCCATGGAGGCACTGCTGTACGGCT
GCATGACATGATCACCACTC
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protein sequence of EsuBft1032_13a-0001

>EsuBft1032_13 ID=EsuBft1032_13|Name=EsuBft1032_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=189bp
MLFVVRRLQELGRRKKIPLYMCFVDLKKAYDSVDREMLLKALARAGELGR
RKKIPLFMCFVDLNKAYDSVDRDMLWKVLARAGIPAKLIEVIRQFHDGMR
ARVRMDDGELSDWFFVTQGVRQGCVLSPLLFNICFAEVLEVVVIRFSEDD
VVLLRSLVYLKEEKTEARGGGGDTPLPSTEGSMGDAVCR
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mRNA from alignment at Scaffold_578:194488..195697-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1032_13a-0001 ID=EsuBft1032_13a-0001|Name=EsuBft1032_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1210bp|location=Sequence derived from alignment at Scaffold_578:194488..195697- (Ectocarpus subulatus male Bft15b)
TGCTGTACAAGAAGGGTGACCGGTCCAACTGAAACAACCACAGGTCGATT
TCGCTACTTTCTCACGTAGGTAAGGTCCCCATCAAGATCATCACCAACCG
TCTAAGCGCCTTCTGCGAAGCCAACAACATCCTCCCGGAAGAACAGTGCG
GATTTCGACCCGGGCGATCCACCGTCGACATGCTGTTCGTCGTGCGCCGC
CTCCAGGAGCTGGGGCGGAGAAAGAAAATACCGCTCTACATGTGCTTCGT
CGACTTGAAGAAGGCGTATGATTCGGTGGACCGAGAGATGCTACTGAAGG
CGCTGGCCAGGGCCGGGGTTCCCGCGAAGCTGATCGAAGTCATCCGNCCG
CCTCCAGGAGCTGGGGCGGAGAAAGAAAATACCGCTCTTCATGTGCTTCG
TCGACTTGAACAAGGCGTATGATTCGGTGGACCGAGATATGCTATGGAAG
GTGCTGGCCAGGGCCGGGATTCCCGCGAAGCTGATCGAAGTCATCCGCCA
ATTCCACGATGGAATGCGGGCCCGGGTGCGCATGGACGACGGAGAACTAT
CGGACTGGTTCTTCGTGACACAGGGCGTGCGACAAGGGTGTGTGCTATCC
CCACTGCTGTTCAACATCTGCTTCGCTGAGGTCCTCGAGGTCGTTGTCAT
CCGATTCAGCGAGGATGATGTTGTTCTTCTGCGGAGCCTGGTGTACTTGA
AGGAGGAGAAAACGGAAGCGCGGGGGGGGGGAGGAGACACCCCTTTACCG
AGCACGGAGGGCAGTATGGGGGATGCTGTATGCCGATGATGCCGGCGTCG
TATCGAGGTCTGCAGAAGGACTCGCGAGAATGATGACCATCATCGTTGAG
GTGTTCGGGGAGTTCGGGCTAACGGTGTCGGAGAAGAAGACGGAGACGCT
CCTGATGCGCGCAAAGGACAAGCCGACTACAACATCACAGCCCACCCCGC
CTCCACCACTGACCATCGAAGCCGCGGGACAGAAATACGCCCAGACGACC
GAGTTCCGGTACCTCGGTGGCCTCGTCAACGAACATGGCGACCTCACCCG
AGAGATCAACTACAGGAGCAGAGGAGCGTGGGCGTGCCTCAGGCGATATG
GCCGGGAGCTCTTCGACAGACCGCAAGCGCCATTCCGACTCAAGATCCGC
CTGCTCCAGGTGGAGGCCATGGAGGCACTGCTGTACGGCTGCATGACATG
ATCACCACTC
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Coding sequence (CDS) from alignment at Scaffold_578:194488..195697-

>EsuBft1032_13a-0001 ID=EsuBft1032_13a-0001|Name=EsuBft1032_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=570bp|location=Sequence derived from alignment at Scaffold_578:194488..195697- (Ectocarpus subulatus male Bft15b)
ATGCTGTTCGTCGTGCGCCGCCTCCAGGAGCTGGGGCGGAGAAAGAAAAT
ACCGCTCTACATGTGCTTCGTCGACTTGAAGAAGGCGTATGATTCGGTGG
ACCGAGAGATGCTACTGAAGGCGCTGGCCAGGGCCGGGGAGCTGGGGCGG
AGAAAGAAAATACCGCTCTTCATGTGCTTCGTCGACTTGAACAAGGCGTA
TGATTCGGTGGACCGAGATATGCTATGGAAGGTGCTGGCCAGGGCCGGGA
TTCCCGCGAAGCTGATCGAAGTCATCCGCCAATTCCACGATGGAATGCGG
GCCCGGGTGCGCATGGACGACGGAGAACTATCGGACTGGTTCTTCGTGAC
ACAGGGCGTGCGACAAGGGTGTGTGCTATCCCCACTGCTGTTCAACATCT
GCTTCGCTGAGGTCCTCGAGGTCGTTGTCATCCGATTCAGCGAGGATGAT
GTTGTTCTTCTGCGGAGCCTGGTGTACTTGAAGGAGGAGAAAACGGAAGC
GCGGGGGGGGGGAGGAGACACCCCTTTACCGAGCACGGAGGGCAGTATGG
GGGATGCTGTATGCCGATGA
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