EsuBft1031_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1031_7a-0001
Unique NameEsuBft1031_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_417contigScaffold_417:130611..131035 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LGJ4
ProteomeIdEsuBft1031_7
Protein domainsIPR008250
Protein domainsSSF81665
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsIPR006539
Protein domainsTMhelix
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Noteprobable phospholipid-transporting atpase im os:homo sapiens gn:atp8b4 pe:1 sv:3 [Automatic annotation]
Nb exon2
Max annot lvl2759|Eukaryota
Length372
Hectar predicted targeting categoryother localisation
Evalue6.03e-66
EggNOG OGsCOG0474@1|root,KOG0206@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameDNF3
KEGG rclassRC00002
KEGG koko:K01509,ko:K01530,ko:K14802
KEGG TC3.A.3.8
KEGG ReactionR00086
KEGG Pathwayko00230,ko04742,map00230,map04742
GOsGO:0000749,GO:0003674,GO:0003824,GO:0004012,GO:0005215,GO:0005319,GO:0005548,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005798,GO:0005802,GO:0005886,GO:0005937,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006886,GO:0006892,GO:0006900,GO:0006996,GO:0008104,GO:0008150,GO:0009987,GO:0010033,GO:0010876,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015914,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019236,GO:0030133,GO:0030135,GO:0030136,GO:0030140,GO:0030427,GO:0031136,GO:0031137,GO:0031139,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0032456,GO:0033036,GO:0034204,GO:0034613,GO:0042221,GO:0042623,GO:0042886,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043332,GO:0043492,GO:0043900,GO:0043902,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0045184,GO:0045332,GO:0046907,GO:0046999,GO:0048193,GO:0048194,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051286,GO:0051641,GO:0051649,GO:0051716,GO:0061024,GO:0065007,GO:0065008,GO:0070727,GO:0070867,GO:0070887,GO:0071310,GO:0071444,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0097035,GO:0097708,GO:0098791,GO:0120025,GO:0120038,GO:2000241,GO:2000243
EC3.6.1.3,3.6.3.1
Descriptionphospholipid-translocating ATPase activity
COG categoryP
BRITEko00000,ko00001,ko01000,ko03009
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0010468
GO0045332
GO0004571
EC3.6.3.1
GO0055037
GO0004012
GO0015917
GO0000287
GO0005765
GO0042625
GO0005524
GO0055085
GO0005637
GO0001669
GO0016021
GO0034220
GO0007030
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1031_7aEsuBft1031_7aEctocarpus subulatus male Bft15bgeneScaffold_417 130611..131035 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1031_7a-0001-exonEsuBft1031_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_417 130611..130631 -
EsuBft1031_7a-0001-exonagat-exon-36799Ectocarpus subulatus male Bft15bexonScaffold_417 130685..131035 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1031_7a-0001-cdsEsuBft1031_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_417 130611..130631 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1031_7a-0001EsuBft1031_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_417 130611..131035 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1031_7a-0001 ID=EsuBft1031_7a-0001|Name=EsuBft1031_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=372bp|location=Sequence derived from alignment at Scaffold_417:130611..131035- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGCGATACTAACGCGGCCGGAGATCAAGCCCTTCCGGACGATCGA
CATCCTCCGGGAGGGCGTCATCGCAGGAGAGGAGCAGAGCGCGATGGCCG
ACAACAGCGTGGTGACCTCCAAGTACAACGTGATCACCTTCGTGCCCAGG
TCGCTCTTCGAGCAGTTCCGGCGGATAGCGAACGTCTACTTCCTCGTGAT
CAGCGTGCTGATGATGCTCGGCTGGTACACCGATCTGTTCGAGAGCCCGC
TGGCGCCCTTCTCCACCCTCATCCCGCTCATCCTCGTGCTCAGCGTAACC
ATGATCAAGGACGGGGCCGAGGACCTCAAGAGACATCGTTCCGATAACCG
GGCTTGCATGCGTTTGATGTGA
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protein sequence of EsuBft1031_7a-0001

>EsuBft1031_7 ID=EsuBft1031_7|Name=EsuBft1031_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=123bp
MGAILTRPEIKPFRTIDILREGVIAGEEQSAMADNSVVTSKYNVITFVPR
SLFEQFRRIANVYFLVISVLMMLGWYTDLFESPLAPFSTLIPLILVLSVT
MIKDGAEDLKRHRSDNRACMRLM
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mRNA from alignment at Scaffold_417:130611..131035-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1031_7a-0001 ID=EsuBft1031_7a-0001|Name=EsuBft1031_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=425bp|location=Sequence derived from alignment at Scaffold_417:130611..131035- (Ectocarpus subulatus male Bft15b)
ATGGGAGCGATACTAACGCGGCCGGAGATCAAGCCCTTCCGGACGATCGA
CATCCTCCGGGAGGGCGTCATCGCAGGAGAGGAGCAGAGCGCGATGGCCG
ACAACAGCGTGGTGACCTCCAAGTACAACGTGATCACCTTCGTGCCCAGG
TCGCTCTTCGAGCAGTTCCGGCGGATAGCGAACGTCTACTTCCTCGTGAT
CAGCGTGCTGATGATGCTCGGCTGGTACACCGATCTGTTCGAGAGCCCGC
TGGCGCCCTTCTCCACCCTCATCCCGCTCATCCTCGTGCTCAGCGTAACC
ATGATCAAGGACGGGGCCGAGGACCTCAAGAGACATCGTTCCGATAACCG
GGTGAGTGAGAGCAATTGAATGCATGTAAGATGCGTTTTGCGTTGGCGCT
ACAGGCTTGCATGCGTTTGATGTGA
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Coding sequence (CDS) from alignment at Scaffold_417:130611..131035-

>EsuBft1031_7a-0001 ID=EsuBft1031_7a-0001|Name=EsuBft1031_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=372bp|location=Sequence derived from alignment at Scaffold_417:130611..131035- (Ectocarpus subulatus male Bft15b)
ATGGGAGCGATACTAACGCGGCCGGAGATCAAGCCCTTCCGGACGATCGA
CATCCTCCGGGAGGGCGTCATCGCAGGAGAGGAGCAGAGCGCGATGGCCG
ACAACAGCGTGGTGACCTCCAAGTACAACGTGATCACCTTCGTGCCCAGG
TCGCTCTTCGAGCAGTTCCGGCGGATAGCGAACGTCTACTTCCTCGTGAT
CAGCGTGCTGATGATGCTCGGCTGGTACACCGATCTGTTCGAGAGCCCGC
TGGCGCCCTTCTCCACCCTCATCCCGCTCATCCTCGTGCTCAGCGTAACC
ATGATCAAGGACGGGGCCGAGGACCTCAAGAGACATCGTTCCGATAACCG
GGCTTGCATGCGTTTGATGTGA
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