EsuBft1031_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1031_3a-0001
Unique Name	EsuBft1031_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_417	contig	Scaffold_417:161705..167208 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	13735.ENSPSIP00000000041
ProteomeId	EsuBft1031_3
Protein domains	PTHR19446
Protein domains	IPR000477
Owner	apollo_admin@sb-roscoff.fr
Note	probable rna-directed dna polymerase from transposon x-element os:drosophila melanogaster gn:x- [Automatic annotation]
Nb exon	1
Max annot lvl	33208\|Metazoa
Length	5504
Evalue	8.45e-27
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota,39TZY@33154\|Opisthokonta,3BI15@33208\|Metazoa,3CYKV@33213\|Bilateria,487I3@7711\|Chordata,4962T@7742\|Vertebrata,4CKCN@8459\|Testudines
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG rclass	RC00004,RC00039,RC00041
KEGG ko	ko:K04257,ko:K13506
KEGG Reaction	R00851,R09380
KEGG Pathway	ko00561,ko00564,ko01100,ko01110,ko04740,map00561,map00564,map01100,map01110,map04740
KEGG Module	M00089
EC	2.3.1.15
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
COG category	S
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004,ko04030

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1031_3a	EsuBft1031_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_417 161705..167208 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1031_3a-0001-exon	EsuBft1031_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_417 161705..167208 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1031_3a-0001-exon	agat-three_prime_utr-305	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_417 161705..166485 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1031_3a-0001-cds	EsuBft1031_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_417 166486..167208 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1031_3a-0001	EsuBft1031_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_417 166486..167208 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_417:161705..167208-
coding sequence from alignment at Scaffold_417:161705..167208-

spliced messenger RNA

>EsuBft1031_3a-0001 ID=EsuBft1031_3a-0001|Name=EsuBft1031_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5504bp|location=Sequence derived from alignment at Scaffold_417:161705..167208- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAACAGAAAGGCCGTCGGGCCGAACGACCTACCGGCTGAGCTGAT
CAAGCTTTGCCTGGACGGAGATCAAGGTCTCCTCCGCGAGTTCTACGCCA
CTGCCGTGGACGTGTTGCTGACGGGGGACGTTCCACAGCAGTGGAAGGAT
GCCACCATCAAAGCGCTGTTCAAGAAGGGGGACACGATGGAGTGCGGCAA
CTACCGGGGCATCTCTCTCGTCGCACACGCCGGCAAGGTGCTGCTTAAGG
TCGTCGCTACACGACTGAGCCACTACTGCGAGCGAGAGGGCATCCTCCCG
GAGGAGCAGAGCGGTTTCCGCCCACACCGGTCGACGCTCGACATGCTGTT
CGCCATCCAGCGGCTCCATGAGCTCGCGAGGAAGAAGAGTTCTGCGATGT
TCGCGTGCTTCGTCGACCTCACCAAGGCATACGATTCGGTNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGTGGCCGAGTT
CGACAAGAACCCCAAGGTGACGGCGGACATGGTCAAGATCGGGGCACAAG
TGGAGTACACGGGCAAGAAGGGCAGGTTGGCGGGGAAGAAGACGAATGTG
GTGACGGACGCAGAGGCCCTGTGGGCCATGCTCTACGCTGACGACGCGGC
CATCGCCTCGCGCTCGCCAGAGAGTCTGGAGAAGATGATGTCGGTCATCG
TGCGCGTGGCCGGTCTGTTCTGACTGATGGTATCGGAGCCGAAGACGGAG
ATCATGTGCATGCTGCTAAAAGGGATCGAGGAACGCCCGTTCACGGTTAG
CGCCGCCGGCCAGACGTACAAGCAGACAGATCGGTTTGTGTACCTCNNNN
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AAGCGCATGCTTTAAAGAGCGATGGCGGGGGGCGTGGGATACCGGTGCGG
GCAGGAGAGCGACTGGGTGGCTGGTCTAGGAGAGGACCTCGTGGCCTTCA
ACACGGGAGACGAAAAGGAAGGGGGTTAATGGAAAGAGAGCGCCAAGGAC
CCGGAGGTGTGGTACAACAAGGTCGAGGACGGGGCGGCATGGCTCATGAG
GAAATGGCACAGGCAGGAGGCGGAAGCGTCCGCGAAGCGCCAGCGCGCGA
GGCAAGCAGAAGCAGAGAGTACGGCCATCTCAGGACCGAAGAGAAAGAGA
GTCGGGGAAGCGGCGGTGGGGGGGAAGAAACGGCGACCGGTCACTGCTGT
AGAAGCGAGTAGGGCGGCCGAGGCCGCGCTTGTGGCGAACTATGTACCCG
GCTGATGTTGTTGCGCCCTGTTTCCCTCCCTGCTGTATGCTATACTCCTT
TGTGTATGTCCTTTGTATTGCCTTCGGCCTCTGTGCTGTGTCTCTATTTT
TTTCATGTCCTCCCTGCCTACTCTGTTGTGTTGCGTACCTTGATCTCGCT
TTTGCTGTTGCTTTTGTTTTTTGTACATCTGGCTGTCTGCCCAACTGCTG
CCTCTTTGTCCTGTTTGCTCCGTTACTCCCATGCCCTGGTGCGTGGTGCC
TGGTGCTGGTACGTTACCCTTTGATTATTTCTTTAGGCGGGTGTGGGAAG
CGTCCTCCTTTATTATTGTTTTTGTTTTATTTTTGATCGGGGCTCTTTGC
TCGAACGATCGGTGCGGTACCTGTTATTTTCTGTTCATTTCGTTTCCTTG
TTTCCGAGTGGTTTGTACCCTATTTTTGTTTTGTTACCCCGCGGCGTTGT
ATGTGCCGGGTTTTGAGACCACGGGCTCCCCATTTTTTGTGGACTATACA
GCTAATGCGAGAAACAACAACAAACAACACAGCGTGCATGCTACGGGCGG
CCCGTACTGGCGCGCTGGCGCTTGGCGCACATGGCTAGGGGGCACGCAGA
TGCACGGTAGTCCCCTATAGAGCACACGGTGCCCCTTTATAGAGGAATTA
GTATTGTTTGGTTTTGTATATGATTTAGGATGGCGTTCTGGGGGGGGGAG
ATGGTCACTTCATACCCTCCCCCCCCAAAAAATCCTCCTATATAAGTGAA
TGCG

protein sequence of EsuBft1031_3a-0001

>EsuBft1031_3 ID=EsuBft1031_3|Name=EsuBft1031_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=240bp
MANRKAVGPNDLPAELIKLCLDGDQGLLREFYATAVDVLLTGDVPQQWKD
ATIKALFKKGDTMECGNYRGISLVAHAGKVLLKVVATRLSHYCEREGILP
EEQSGFRPHRSTLDMLFAIQRLHELARKKSSAMFACFVDLTKAYDSVXXX
XXXXXXXXXXXXAVAEFDKNPKVTADMVKIGAQVEYTGKKGRLAGKKTNV
VTDAEALWAMLYADDAAIASRSPESLEKMMSVIVRVAGLF

mRNA from alignment at Scaffold_417:161705..167208-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1031_3a-0001 ID=EsuBft1031_3a-0001|Name=EsuBft1031_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5504bp|location=Sequence derived from alignment at Scaffold_417:161705..167208- (Ectocarpus subulatus male Bft15b)
ATGGCCAACAGAAAGGCCGTCGGGCCGAACGACCTACCGGCTGAGCTGAT
CAAGCTTTGCCTGGACGGAGATCAAGGTCTCCTCCGCGAGTTCTACGCCA
CTGCCGTGGACGTGTTGCTGACGGGGGACGTTCCACAGCAGTGGAAGGAT
GCCACCATCAAAGCGCTGTTCAAGAAGGGGGACACGATGGAGTGCGGCAA
CTACCGGGGCATCTCTCTCGTCGCACACGCCGGCAAGGTGCTGCTTAAGG
TCGTCGCTACACGACTGAGCCACTACTGCGAGCGAGAGGGCATCCTCCCG
GAGGAGCAGAGCGGTTTCCGCCCACACCGGTCGACGCTCGACATGCTGTT
CGCCATCCAGCGGCTCCATGAGCTCGCGAGGAAGAAGAGTTCTGCGATGT
TCGCGTGCTTCGTCGACCTCACCAAGGCATACGATTCGGTNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGTGGCCGAGTT
CGACAAGAACCCCAAGGTGACGGCGGACATGGTCAAGATCGGGGCACAAG
TGGAGTACACGGGCAAGAAGGGCAGGTTGGCGGGGAAGAAGACGAATGTG
GTGACGGACGCAGAGGCCCTGTGGGCCATGCTCTACGCTGACGACGCGGC
CATCGCCTCGCGCTCGCCAGAGAGTCTGGAGAAGATGATGTCGGTCATCG
TGCGCGTGGCCGGTCTGTTCTGACTGATGGTATCGGAGCCGAAGACGGAG
ATCATGTGCATGCTGCTAAAAGGGATCGAGGAACGCCCGTTCACGGTTAG
CGCCGCCGGCCAGACGTACAAGCAGACAGATCGGTTTGTGTACCTCNNNN
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AAGCGCATGCTTTAAAGAGCGATGGCGGGGGGCGTGGGATACCGGTGCGG
GCAGGAGAGCGACTGGGTGGCTGGTCTAGGAGAGGACCTCGTGGCCTTCA
ACACGGGAGACGAAAAGGAAGGGGGTTAATGGAAAGAGAGCGCCAAGGAC
CCGGAGGTGTGGTACAACAAGGTCGAGGACGGGGCGGCATGGCTCATGAG
GAAATGGCACAGGCAGGAGGCGGAAGCGTCCGCGAAGCGCCAGCGCGCGA
GGCAAGCAGAAGCAGAGAGTACGGCCATCTCAGGACCGAAGAGAAAGAGA
GTCGGGGAAGCGGCGGTGGGGGGGAAGAAACGGCGACCGGTCACTGCTGT
AGAAGCGAGTAGGGCGGCCGAGGCCGCGCTTGTGGCGAACTATGTACCCG
GCTGATGTTGTTGCGCCCTGTTTCCCTCCCTGCTGTATGCTATACTCCTT
TGTGTATGTCCTTTGTATTGCCTTCGGCCTCTGTGCTGTGTCTCTATTTT
TTTCATGTCCTCCCTGCCTACTCTGTTGTGTTGCGTACCTTGATCTCGCT
TTTGCTGTTGCTTTTGTTTTTTGTACATCTGGCTGTCTGCCCAACTGCTG
CCTCTTTGTCCTGTTTGCTCCGTTACTCCCATGCCCTGGTGCGTGGTGCC
TGGTGCTGGTACGTTACCCTTTGATTATTTCTTTAGGCGGGTGTGGGAAG
CGTCCTCCTTTATTATTGTTTTTGTTTTATTTTTGATCGGGGCTCTTTGC
TCGAACGATCGGTGCGGTACCTGTTATTTTCTGTTCATTTCGTTTCCTTG
TTTCCGAGTGGTTTGTACCCTATTTTTGTTTTGTTACCCCGCGGCGTTGT
ATGTGCCGGGTTTTGAGACCACGGGCTCCCCATTTTTTGTGGACTATACA
GCTAATGCGAGAAACAACAACAAACAACACAGCGTGCATGCTACGGGCGG
CCCGTACTGGCGCGCTGGCGCTTGGCGCACATGGCTAGGGGGCACGCAGA
TGCACGGTAGTCCCCTATAGAGCACACGGTGCCCCTTTATAGAGGAATTA
GTATTGTTTGGTTTTGTATATGATTTAGGATGGCGTTCTGGGGGGGGGAG
ATGGTCACTTCATACCCTCCCCCCCCAAAAAATCCTCCTATATAAGTGAA
TGCG

Coding sequence (CDS) from alignment at Scaffold_417:161705..167208-

>EsuBft1031_3a-0001 ID=EsuBft1031_3a-0001|Name=EsuBft1031_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=723bp|location=Sequence derived from alignment at Scaffold_417:161705..167208- (Ectocarpus subulatus male Bft15b)
ATGGCCAACAGAAAGGCCGTCGGGCCGAACGACCTACCGGCTGAGCTGAT
CAAGCTTTGCCTGGACGGAGATCAAGGTCTCCTCCGCGAGTTCTACGCCA
CTGCCGTGGACGTGTTGCTGACGGGGGACGTTCCACAGCAGTGGAAGGAT
GCCACCATCAAAGCGCTGTTCAAGAAGGGGGACACGATGGAGTGCGGCAA
CTACCGGGGCATCTCTCTCGTCGCACACGCCGGCAAGGTGCTGCTTAAGG
TCGTCGCTACACGACTGAGCCACTACTGCGAGCGAGAGGGCATCCTCCCG
GAGGAGCAGAGCGGTTTCCGCCCACACCGGTCGACGCTCGACATGCTGTT
CGCCATCCAGCGGCTCCATGAGCTCGCGAGGAAGAAGAGTTCTGCGATGT
TCGCGTGCTTCGTCGACCTCACCAAGGCATACGATTCGGTNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGTGGCCGAGTT
CGACAAGAACCCCAAGGTGACGGCGGACATGGTCAAGATCGGGGCACAAG
TGGAGTACACGGGCAAGAAGGGCAGGTTGGCGGGGAAGAAGACGAATGTG
GTGACGGACGCAGAGGCCCTGTGGGCCATGCTCTACGCTGACGACGCGGC
CATCGCCTCGCGCTCGCCAGAGAGTCTGGAGAAGATGATGTCGGTCATCG
TGCGCGTGGCCGGTCTGTTCTGA