EsuBft1031_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1031_2a-0001
Unique Name	EsuBft1031_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_417	contig	Scaffold_417:200998..202030 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	15368.BRADI2G31610.1
ProteomeId	EsuBft1031_2
Protein domains	IPR013103
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	copia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon	2
Max annot lvl	35493\|Streptophyta
Length	834
Evalue	2.07e-30
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,37THH@33090\|Viridiplantae,3GG2K@35493\|Streptophyta,3M5VU@4447\|Liliopsida,3IIIB@38820\|Poales
Date last modified	2016-06-14
Date creation	2016-06-14
Description	gag-polypeptide of LTR copia-type
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003824

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1031_2a	EsuBft1031_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_417 200998..202030 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1031_2a-0001-exon	agat-exon-36776	Ectocarpus subulatus male Bft15b	exon	Scaffold_417 200998..201054 -
EsuBft1031_2a-0001-exon	EsuBft1031_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_417 201254..202030 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1031_2a-0001-cds	EsuBft1031_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_417 200998..201054 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1031_2a-0001	EsuBft1031_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_417 200998..202030 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_417:200998..202030-
coding sequence from alignment at Scaffold_417:200998..202030-

spliced messenger RNA

>EsuBft1031_2a-0001 ID=EsuBft1031_2a-0001|Name=EsuBft1031_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=834bp|location=Sequence derived from alignment at Scaffold_417:200998..202030- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGAGCTTTGTCCAATCAGAACTGGATGAGGTTGTGTTCATTCGTCT
TCCCCCTGGGTGCGGTGCGCTTTCCGGTAAGGTCGTGCGGTTGAGCCGGA
GCCTATACGGTCTGAAGCAGGCGTCCCGCACATGGCATCATCACTTGATG
CGTGGCATGAAGAGTCTTGGTTTCGAGCCTTGTGCCGCCGATGCGTGTGT
GATGCGTCTGATCGAGAGCGGTGTAGTCACCATGGTGGTTGTGATCCACG
TAGACGACATCTTCTCTATCGGGCTCAAGAGCAGGTGCGATCAGTTTGGT
GTTGACCTCAACCGGTATGTGCCCATTTCCAACCTTGGGGAACTGCGCTG
GTATGCGGGTTGCCGGTTTTCTCGTGACACGGTGTTGGGGACGGTGACTA
TTTCGCAACAGGCTGTAGCGGAGGAGATCGTTGCTAAGTTCGGTGTGACG
ACCGACAAAGAGACACCTGTGGTCGTTGGGTTGAAGCTTGAGCAGTACGA
CGCCGACGAGCCCGATGTCGACGAGCCTTTCCGGTCGCTAGTGGGACACT
TGATGTGGCTGGCGAATCAGACTCGCCCGGATATTCTCAACGCGGTGCGT
GCCGTTGCGAGGTATTCGCACGCGCCGAAGCGACTGCACTGGGAGGCGGC
TTTGCATGTTTTGATGTATGTTAGATTCACGAGCGGGTACGGGATTACTT
TTCAGAGGGGCACGGTGGGAGGAGACCACATGGAACTTTTTGTCGATTCG
GACTTCNACGCCGAAGCGACTGCACTGGACGCAGAAGAGCGTCACCCTGT
CTTCGACGGAAGCGGAGTACGTGGCGATGTCTGA

protein sequence of EsuBft1031_2a-0001

>EsuBft1031_2 ID=EsuBft1031_2|Name=EsuBft1031_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=277bp
MPSFVQSELDEVVFIRLPPGCGALSGKVVRLSRSLYGLKQASRTWHHHLM
RGMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFG
VDLNRYVPISNLGELRWYAGCRFSRDTVLGTVTISQQAVAEEIVAKFGVT
TDKETPVVVGLKLEQYDADEPDVDEPFRSLVGHLMWLANQTRPDILNAVR
AVARYSHAPKRLHWEAALHVLMYVRFTSGYGITFQRGTVGGDHMELFVDS
DFXAEATALDAEERHPVFDGSGVRGDV

mRNA from alignment at Scaffold_417:200998..202030-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1031_2a-0001 ID=EsuBft1031_2a-0001|Name=EsuBft1031_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1033bp|location=Sequence derived from alignment at Scaffold_417:200998..202030- (Ectocarpus subulatus male Bft15b)
ATGCCGAGCTTTGTCCAATCAGAACTGGATGAGGTTGTGTTCATTCGTCT
TCCCCCTGGGTGCGGTGCGCTTTCCGGTAAGGTCGTGCGGTTGAGCCGGA
GCCTATACGGTCTGAAGCAGGCGTCCCGCACATGGCATCATCACTTGATG
CGTGGCATGAAGAGTCTTGGTTTCGAGCCTTGTGCCGCCGATGCGTGTGT
GATGCGTCTGATCGAGAGCGGTGTAGTCACCATGGTGGTTGTGATCCACG
TAGACGACATCTTCTCTATCGGGCTCAAGAGCAGGTGCGATCAGTTTGGT
GTTGACCTCAACCGGTATGTGCCCATTTCCAACCTTGGGGAACTGCGCTG
GTATGCGGGTTGCCGGTTTTCTCGTGACACGGTGTTGGGGACGGTGACTA
TTTCGCAACAGGCTGTAGCGGAGGAGATCGTTGCTAAGTTCGGTGTGACG
ACCGACAAAGAGACACCTGTGGTCGTTGGGTTGAAGCTTGAGCAGTACGA
CGCCGACGAGCCCGATGTCGACGAGCCTTTCCGGTCGCTAGTGGGACACT
TGATGTGGCTGGCGAATCAGACTCGCCCGGATATTCTCAACGCGGTGCGT
GCCGTTGCGAGGTATTCGCACGCGCCGAAGCGACTGCACTGGGAGGCGGC
TTTGCATGTTTTGATGTATGTTAGATTCACGAGCGGGTACGGGATTACTT
TTCAGAGGGGCACGGTGGGAGGAGACCACATGGAACTTTTTGTCGATTCG
GACTTCNACGCCGAAGCGACTGCACTGGTAGGTGGCTTTGCATGTTTTGA
TGTATGTTAGATTCACGAGCGGGCACGGGATTACTTTTCAGAGGGGCAAG
GTGGGAGGAGACCACATGGAATTTTTTGTCGATTCGGACTTCGCCAACAA
GGCAACCGACCGGCGGTCTGTTTCTGGGGCACTATTTAGTGATGTTCGCT
GGTGGGTGTGTGATGTATCTGTGTAGGACGCAGAAGAGCGTCACCCTGTC
TTCGACGGAAGCGGAGTACGTGGCGATGTCTGA

Coding sequence (CDS) from alignment at Scaffold_417:200998..202030-

>EsuBft1031_2a-0001 ID=EsuBft1031_2a-0001|Name=EsuBft1031_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=834bp|location=Sequence derived from alignment at Scaffold_417:200998..202030- (Ectocarpus subulatus male Bft15b)
ATGCCGAGCTTTGTCCAATCAGAACTGGATGAGGTTGTGTTCATTCGTCT
TCCCCCTGGGTGCGGTGCGCTTTCCGGTAAGGTCGTGCGGTTGAGCCGGA
GCCTATACGGTCTGAAGCAGGCGTCCCGCACATGGCATCATCACTTGATG
CGTGGCATGAAGAGTCTTGGTTTCGAGCCTTGTGCCGCCGATGCGTGTGT
GATGCGTCTGATCGAGAGCGGTGTAGTCACCATGGTGGTTGTGATCCACG
TAGACGACATCTTCTCTATCGGGCTCAAGAGCAGGTGCGATCAGTTTGGT
GTTGACCTCAACCGGTATGTGCCCATTTCCAACCTTGGGGAACTGCGCTG
GTATGCGGGTTGCCGGTTTTCTCGTGACACGGTGTTGGGGACGGTGACTA
TTTCGCAACAGGCTGTAGCGGAGGAGATCGTTGCTAAGTTCGGTGTGACG
ACCGACAAAGAGACACCTGTGGTCGTTGGGTTGAAGCTTGAGCAGTACGA
CGCCGACGAGCCCGATGTCGACGAGCCTTTCCGGTCGCTAGTGGGACACT
TGATGTGGCTGGCGAATCAGACTCGCCCGGATATTCTCAACGCGGTGCGT
GCCGTTGCGAGGTATTCGCACGCGCCGAAGCGACTGCACTGGGAGGCGGC
TTTGCATGTTTTGATGTATGTTAGATTCACGAGCGGGTACGGGATTACTT
TTCAGAGGGGCACGGTGGGAGGAGACCACATGGAACTTTTTGTCGATTCG
GACTTCNACGCCGAAGCGACTGCACTGGACGCAGAAGAGCGTCACCCTGT
CTTCGACGGAAGCGGAGTACGTGGCGATGTCTGA