EsuBft1030_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1030_8a-0001
Unique Name	EsuBft1030_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_600	contig	Scaffold_600:95088..97948 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G873
ProteomeId	EsuBft1030_8
Protein domains	SSF56672
Protein domains	PTHR19446
Protein domains	IPR000477
Owner	apollo_admin@sb-roscoff.fr
Note	probable rna-directed dna polymerase from transposon x-element os:drosophila melanogaster gn:x- [Automatic annotation]
Nb exon	3
Max annot lvl	2759\|Eukaryota
Length	1614
Hectar predicted targeting category	other localisation
Evalue	5.84e-178
EggNOG OGs	COG0553@1\|root,COG2940@1\|root,COG5076@1\|root,KOG1075@1\|root,KOG0383@2759\|Eukaryota,KOG0384@2759\|Eukaryota,KOG1075@2759\|Eukaryota,KOG1081@2759\|Eukaryota,KOG1474@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG rclass	RC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG ko	ko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG Reaction	R00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathway	ko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG Module	M00089
EC	2.1.1.43,2.3.1.15,3.6.4.12
Description	acetylation-dependent protein binding
COG category	BK
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036

Cross References

External references for this mRNA


Database	Accession
GO	0006259
EC	3.1
GO	0004518
GO	0016740

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1030_8a	EsuBft1030_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_600 95088..97948 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1030_8a-0001-exon	EsuBft1030_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_600 95088..95112 +
EsuBft1030_8a-0001-exon	agat-exon-107966	Ectocarpus subulatus male Bft15b	exon	Scaffold_600 96214..97076 +
EsuBft1030_8a-0001-exon	agat-exon-107967	Ectocarpus subulatus male Bft15b	exon	Scaffold_600 97223..97948 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1030_8a-0001-cds	EsuBft1030_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_600 95088..95112 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1030_8a-0001-exon	agat-three_prime_utr-304	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_600 97925..97948 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1030_8a-0001	EsuBft1030_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_600 95088..97924 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_600:95088..97948+
coding sequence from alignment at Scaffold_600:95088..97948+

spliced messenger RNA

>EsuBft1030_8a-0001 ID=EsuBft1030_8a-0001|Name=EsuBft1030_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1614bp|location=Sequence derived from alignment at Scaffold_600:95088..97948+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGATTTGAAGGATGGGGACGTGGACACTACAAGAGACTTGGAGTGCC
CTCGGAGAATGAAGCTTTTGACCAAGTGTTTTGGGAGGAGGTGGACGAAT
GGGCCCAAAAAGAAGAAGAGACATCGAAGGCAGACGTTGGGAACGTAGAA
CTAGAAAAGGAGTTCACTGAGGACGAGGTTGAGGCGTGTGTGAACAAGCT
GAAGTGCCACAAAGCAGCAGGAGCGGATGGGATAGTCAACGAGTTCATGA
AGTTTGGGGGGAAGGGGATGATCCAGCTGATGGTACTGCTGTACAATTGG
GTGTGGAAAAACGAGTATACGCCAAGTAGATGGAGGGAAGGAGTGGTTGT
GAACTTGTTCAAGAAAGGAGACAAGACTGACCCAGGAAACTACAGGGGGA
TCACACTGTTGAATACAGTAGGAAAAAGGTTCTGTAAGCTGCTGAACGAA
ACGATGGTGGGAGTGTTGGAGAAGGAACATAGCATTAGTGAGGGCCAGGC
AGGTTTCCGCAAGAAGAGGGGGTGCGTAGACCACGTGTTCACGGTAGGGA
GAATCATCCAAGGTAGAAAGAGGGCGGGAAAGCCGACGTACTGCTTCTTC
CTGGACGTGAAAAAGGCATACGACACCGTGTGGAGAAATGGGTTGTGGAA
ACAACTGTCCAAATACGGGATCAAGGGGAAAATGTGGAGAGTGCTGAAGA
AGATGACAGAGTGTACGAAAAGCGCGGTCATGCTAGACGGAGAACTGTCA
AAATTCTTCGACATTGAGCAGGGGGTCCCACAAGGTTGCACGCTGTCCCC
AACATTGTTCCAGGTGTTCATCAACGATCTGTTGGAAGTCGTAGAGGCAG
GCCGGAAGGGAGTAAAACTAGGGGACACGGAAATATCGGGACTGCAACTG
CAAATTGACGCGGCGAAGAAGTTTACTGATAAGTGGAGATTGTCTGCCAA
CGTTAGGAAGAGTGCCGTCATGGTAGGCAACGAGAACAAGGAGGAACCAG
TAGAAGATTGGTGGAAGTGGGGGATCGAGGAGATTGCAGTAGTGGACCAG
TACACATACCTCGGAGTAGAGATCGCAAAAGACTGCTCGTGGAATGCACA
CATGTCCAAGGTAGCGGAAAAGGGCAAAGCACGAGCAGGGAAGCTGCACC
CAATACTCGCAAACCGGCACCTCGATACACGCATCAAATTGACGGTTTTG
AAGAGCGTAATCGTACCGCCGCTAGAGTACGCCGGAGAAGTATGGGAAGG
AAATAAGAAGGTAGTGAAAGAACTCGAGGCGGCGCAGATGAAAGCAGCGA
AAATCATCCTAGGATGCTCCAAGCGCACAAGTAATGCAGCCGTGAGGGCA
GAATTGGGGATCCAATCCCTACGGTCGGGAAGAGACGCGAGGAAGCTGAC
ATGGCAGTATCGCATGTGCGGGATGGGAGAGGAGAGGTTGCCGAGAATTG
TATGGGAGGCGAAGTGGGCAAACAAAAAGAGGGGTAGACAACCCACGGAA
TGGGTCAAGGTTGTAGAGGACGTATGGAAGGGGCTCGACATCGACGAAGA
TGAAACGTTGGAAACGGAGGGTCTACAGGGGTTCATGTAGACGATATCTG
TTGCTTGTGCCGAG

protein sequence of EsuBft1030_8a-0001

>EsuBft1030_8 ID=EsuBft1030_8|Name=EsuBft1030_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=529bp
MGFEGWGRGHYKRLGVPSENEAFDQVFWEEVDEWAQKEEETSKADVGNVE
LEKEFTEDEVEACVNKLKCHKAAGADGIVNEFMKFGGKGMIQLMVLLYNW
VWKNEYTPSRWREGVVVNLFKKGDKTDPGNYRGITLLNTVGKRFCKLLNE
TMVGVLEKEHSISEGQAGFRKKRGCVDHVFTVGRIIQGRKRAGKPTYCFF
LDVKKAYDTVWRNGLWKQLSKYGIKGKMWRVLKKMTECTKSAVMLDGELS
KFFDIEQGVPQGCTLSPTLFQVFINDLLEVVEAGRKGVKLGDTEISGLQL
QIDAAKKFTDKWRLSANVRKSAVMVGNENKEEPVEDWWKWGIEEIAVVDQ
YTYLGVEIAKDCSWNAHMSKVAEKGKARAGKLHPILANRHLDTRIKLTVL
KSVIVPPLEYAGEVWEGNKKVVKELEAAQMKAAKIILGCSKRTSNAAVRA
ELGIQSLRSGRDARKLTWQYRMCGMGEERLPRIVWEAKWANKKRGRQPTE
WVKVVEDVWKGLDIDEDETLETEGLQGFM

mRNA from alignment at Scaffold_600:95088..97948+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1030_8a-0001 ID=EsuBft1030_8a-0001|Name=EsuBft1030_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2861bp|location=Sequence derived from alignment at Scaffold_600:95088..97948+ (Ectocarpus subulatus male Bft15b)
ATGGGATTTGAAGGATGGGGACGTGGTAAGCAAACTAGGGAAATATCGGT
AGGTAGGGAAGGCAAGAAAGGGCTTAGACCCGAAGAAAAGGGGGGAGGGG
GGAGTCGGATTCCTGGTCAAGGAACACTTGTTTGACGTGGTGGAAGTAGT
GGTGAAAACGGAGTTCGAGGAAAGCCTATGGCTTAAGATACCTGGGGAGC
GGGGTGAGAAAGATTTGTTTCTAGGGAACGTATACGTCCCACCGTCGTCG
AAGAAAGTCGCAAGCAAGGCGCAGGACAACTTTGGACAAATTGGGGAAGA
TGTCCCGAGTCTCAGTAGGAAGCGAGAAGTTGTCATGGTGGGCGATTTCA
ACTCCAGAGTAGGGAAAGCTTCCAGTAGAGGACAGGCGATCGGNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNGCAACTTTGCGAGGTGTGAACGGTGGATTAGTCAGCAGTGG
GAAGGGAAAAAGGGAAGTTCTAGCAGGACACTACAAGAGACTTGGAGTGC
CCTCGGAGAATGAAGCTTTTGACCAAGTGTTTTGGGAGGAGGTGGACGAA
TGGGCCCAAAAAGAAGAAGAGACATCGAAGGCAGACGTTGGGAACGTAGA
ACTAGAAAAGGAGTTCACTGAGGACGAGGTTGAGGCGTGTGTGAACAAGC
TGAAGTGCCACAAAGCAGCAGGAGCGGATGGGATAGTCAACGAGTTCATG
AAGTTTGGGGGGAAGGGGATGATCCAGCTGATGGTACTGCTGTACAATTG
GGTGTGGAAAAACGAGTATACGCCAAGTAGATGGAGGGAAGGAGTGGTTG
TGAACTTGTTCAAGAAAGGAGACAAGACTGACCCAGGAAACTACAGGGGG
ATCACACTGTTGAATACAGTAGGAAAAAGGTTCTGTAAGCTGCTGAACGA
AACGATGGTGGGAGTGTTGGAGAAGGAACATAGCATTAGTGAGGGCCAGG
CAGGTTTCCGCAAGAAGAGGGGGTGCGTAGACCACGTGTTCACGGTAGGG
AGAATCATCCAAGGTAGAAAGAGGGCGGGAAAGCCGACGTACTGCTTCTT
CCTGGACGTGAAAAAGGCATACGACACCGTGTGGAGAAATGGGTTGTGGA
AACAACTGTCCAAATACGGGATCAAGGGGAAAATGTGGAGAGTGCTGAAG
AAGATGACAGAGTGTACGAAAAGCGCGGTCATGCTAGACGGAGAACTGTC
AAAATTCTTCGACATTGAGCAGGGGGTCCCACAAGGTTGCACGCTGTCCC
CAACATTGTTCCAGGTGTTCATCAACGATCTGTTGGAAGTCGTAGAGGCA
GGCCGGAAGGGAGTAAAACTAGGGGACACGGAAATATCGGTTTCAGGAAT
GAATGCTGTTTCTGGATGATTTTGTCGGTGTGTCGGACACCCCTGAGGGA
CTGCAACTGCAAATTGACGCGGCGAAGAAGTTTACTGATAAGTGGAGATT
GTCTGCCAACGTTTGGTATGTCGGACACCCCTGAGGGACTGCAACTGCAA
ATTGACGCGGCGAAGAAGTTTACTGATAAGTGGAGATTGTCTGCCAACGT
TAGGAAGAGTGCCGTCATGGTAGGCAACGAGAACAAGGAGGAACCAGTAG
AAGATTGGTGGAAGTGGGGGATCGAGGAGATTGCAGTAGTGGACCAGTAC
ACATACCTCGGAGTAGAGATCGCAAAAGACTGCTCGTGGAATGCACACAT
GTCCAAGGTAGCGGAAAAGGGCAAAGCACGAGCAGGGAAGCTGCACCCAA
TACTCGCAAACCGGCACCTCGATACACGCATCAAATTGACGGTTTTGAAG
AGCGTAATCGTACCGCCGCTAGAGTACGCCGGAGAAGTATGGGAAGGAAA
TAAGAAGGTAGTGAAAGAACTCGAGGCGGCGCAGATGAAAGCAGCGAAAA
TCATCCTAGGATGCTCCAAGCGCACAAGTAATGCAGCCGTGAGGGCAGAA
TTGGGGATCCAATCCCTACGGTCGGGAAGAGACGCGAGGAAGCTGACATG
GCAGTATCGCATGTGCGGGATGGGAGAGGAGAGGTTGCCGAGAATTGTAT
GGGAGGCGAAGTGGGCAAACAAAAAGAGGGGTAGACAACCCACGGAATGG
GTCAAGGTTGTAGAGGACGTATGGAAGGGGCTCGACATCGACGAAGATGA
AACGTTGGAAACGGAGGGTCTACAGGGGTTCATGTAGACGATATCTGTTG
CTTGTGCCGAG

Coding sequence (CDS) from alignment at Scaffold_600:95088..97948+

>EsuBft1030_8a-0001 ID=EsuBft1030_8a-0001|Name=EsuBft1030_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1590bp|location=Sequence derived from alignment at Scaffold_600:95088..97948+ (Ectocarpus subulatus male Bft15b)
ATGGGATTTGAAGGATGGGGACGTGGACACTACAAGAGACTTGGAGTGCC
CTCGGAGAATGAAGCTTTTGACCAAGTGTTTTGGGAGGAGGTGGACGAAT
GGGCCCAAAAAGAAGAAGAGACATCGAAGGCAGACGTTGGGAACGTAGAA
CTAGAAAAGGAGTTCACTGAGGACGAGGTTGAGGCGTGTGTGAACAAGCT
GAAGTGCCACAAAGCAGCAGGAGCGGATGGGATAGTCAACGAGTTCATGA
AGTTTGGGGGGAAGGGGATGATCCAGCTGATGGTACTGCTGTACAATTGG
GTGTGGAAAAACGAGTATACGCCAAGTAGATGGAGGGAAGGAGTGGTTGT
GAACTTGTTCAAGAAAGGAGACAAGACTGACCCAGGAAACTACAGGGGGA
TCACACTGTTGAATACAGTAGGAAAAAGGTTCTGTAAGCTGCTGAACGAA
ACGATGGTGGGAGTGTTGGAGAAGGAACATAGCATTAGTGAGGGCCAGGC
AGGTTTCCGCAAGAAGAGGGGGTGCGTAGACCACGTGTTCACGGTAGGGA
GAATCATCCAAGGTAGAAAGAGGGCGGGAAAGCCGACGTACTGCTTCTTC
CTGGACGTGAAAAAGGCATACGACACCGTGTGGAGAAATGGGTTGTGGAA
ACAACTGTCCAAATACGGGATCAAGGGGAAAATGTGGAGAGTGCTGAAGA
AGATGACAGAGTGTACGAAAAGCGCGGTCATGCTAGACGGAGAACTGTCA
AAATTCTTCGACATTGAGCAGGGGGTCCCACAAGGTTGCACGCTGTCCCC
AACATTGTTCCAGGTGTTCATCAACGATCTGTTGGAAGTCGTAGAGGCAG
GCCGGAAGGGAGTAAAACTAGGGGACACGGAAATATCGGGACTGCAACTG
CAAATTGACGCGGCGAAGAAGTTTACTGATAAGTGGAGATTGTCTGCCAA
CGTTAGGAAGAGTGCCGTCATGGTAGGCAACGAGAACAAGGAGGAACCAG
TAGAAGATTGGTGGAAGTGGGGGATCGAGGAGATTGCAGTAGTGGACCAG
TACACATACCTCGGAGTAGAGATCGCAAAAGACTGCTCGTGGAATGCACA
CATGTCCAAGGTAGCGGAAAAGGGCAAAGCACGAGCAGGGAAGCTGCACC
CAATACTCGCAAACCGGCACCTCGATACACGCATCAAATTGACGGTTTTG
AAGAGCGTAATCGTACCGCCGCTAGAGTACGCCGGAGAAGTATGGGAAGG
AAATAAGAAGGTAGTGAAAGAACTCGAGGCGGCGCAGATGAAAGCAGCGA
AAATCATCCTAGGATGCTCCAAGCGCACAAGTAATGCAGCCGTGAGGGCA
GAATTGGGGATCCAATCCCTACGGTCGGGAAGAGACGCGAGGAAGCTGAC
ATGGCAGTATCGCATGTGCGGGATGGGAGAGGAGAGGTTGCCGAGAATTG
TATGGGAGGCGAAGTGGGCAAACAAAAAGAGGGGTAGACAACCCACGGAA
TGGGTCAAGGTTGTAGAGGACGTATGGAAGGGGCTCGACATCGACGAAGA
TGAAACGTTGGAAACGGAGGGTCTACAGGGGTTCATGTAG