EsuBft1030_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1030_3a-0001
Unique Name	EsuBft1030_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_600	contig	Scaffold_600:155975..161640 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FSK2
ProteomeId	EsuBft1030_3
Protein domains	IPR006912
Protein domains	PTHR22930
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	554
Hectar predicted targeting category	other localisation
Evalue	3.59e-40
EggNOG OGs	2E2RF@1\|root,2S9YA@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Plant transposon protein
COG category	S

Cross References

External references for this mRNA


Database	Accession
GO	0016788

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1030_3a	EsuBft1030_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_600 155975..161640 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1030_3a-0001-exon	agat-exon-107937	Ectocarpus subulatus male Bft15b	exon	Scaffold_600 155975..161517 -
EsuBft1030_3a-0001-exon	EsuBft1030_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_600 161638..161640 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1030_3a-0001-exon	agat-three_prime_utr-300	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_600 155975..161031 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1030_3a-0001-cds	EsuBft1030_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_600 161032..161517 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1030_3a-0001	EsuBft1030_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_600 161032..161640 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_600:155975..161640-
coding sequence from alignment at Scaffold_600:155975..161640-

spliced messenger RNA

>EsuBft1030_3a-0001 ID=EsuBft1030_3a-0001|Name=EsuBft1030_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5546bp|location=Sequence derived from alignment at Scaffold_600:155975..161640- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGGTGACCCTCATCGCTCCGTCCAAGTACCCGGCGAACAGCGAGGA
CACTGCTTTCTCGAGGACGCTTGAGAGCGTGCGCAAGGACGTTGAGTGCT
TCTTCGGTATCCTGAAGGGACGTTTCAGGATCCTCAAGCTCCGCCTCGGG
TACCGCTCCAAGGAAGACGTCGACAACATCTTCTCCACCTGCTGCATCCT
GCACAACATGCTTCACACCTTCGACGGCATGGACGTGTTCGAGGAAGATG
TCGACTGGGTGGGGAGCGCTGGCCTGCACGACCCCTGGGACCATGACCCA
CTGACAGACTTCACGTCTATCGGATCGACCGGGAAGCTTTCGGAGAAGGA
GGGAGGGGAGGGGGGGGAGGAAAGCAGCGAGACGATCGACCAGCACCCGG
CGCACAGAGAGCTCAAGAAACAGCTAATCGAGAGCTTTTCTTACCGGAAG
AGACACAACGACATTACATGGCTTTCGAGGCCCACGTGAGCCTTCTTCTT
TTTGCTACCACGCCGCTGCCTCGGGTATCTGTTGCAAGCCGTTTTTTTTT
TTTTACTATACGCGGTGTTTAGTAAGACGTTCCCGCCTTGAAGATGGTGT
TGTCGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTTCTTGGTGCACCACCCCCATGTGACT
GCCTTGGAGTGAGCGATGGGTGATGGACTTGCATCTTGTGTTTTTTTTTG
TAGCGGTGTCGAGTACATTTGACCAGCTTCAGTTCCAACCACACTTCTTG
GTGCACCACCCCCACGTGACTGCCGTGGAGGGAGAGACGGGTGATGGACT
TGCGTTTTGTGTTTTTTTTGTAGCGGTGTCGAGTACGTTTGACCAGCTTC
AATTCCAACCACACTTGTTGGTGCACCACCCCCATGTGACTGCCTTGGAG
GGAGAGATGGGTGATAGACTTGCATCTTGTGTTTTTTTTTGTAGCGGTGT
CGAGTACATTTGACCAGCTTCAGTTCCAACCACACTTCTTGGTGCACCAC
CCCCACGTGACTGCCGTGGAGGGAGAGACGGGTGATGGACTTGCGTTTTG
TGTTTTTTTTGTAGCGGTGTCGAGTACGTTTGACCAGCTTCAATTCCAAC
CACACTTGTTGGTGCACCACCCCCATGTGACTGCCTTGGAGGGAGAGATG
GGTGATAGACTTGGGTCTTGTGTTTGTTCTCATGCATGTCAATCAACATT
TCTACACTACGTGTACTGAAGTGGCATGAGCACAAGCATACAGGCCTATG
TATCGGACATTGCAACGTCAAAACGTACGACACTACCAACAACAAGTACG
TGGACGGCTGGCACGAACCAGACCTGCGTATATTGTCGACACTGCCGGGG
AAACAGCAGAGGACGGGGTCGTTACCTACCTCCGAAAACACGCACCCCCT
CTCACATGATTCGGAACCAATACGCACATGTTGAAATCTGCAAACACGCG
GTAGCTCAGCCTTAAGCACCCCTGAAAAGAAACACGAGAACACACAAGCA
AAGGTCCATCCAACCGTCTCTACGCACCGCAATCAAGTTACCCTCCAGCT
GCGTTGGAAGTCACCCCTAAATCAATTTGGAGTCTGCACCATCGAACCGC
ACACAACCATAGATTTGTGGGAATCACCACCACCGTGCATCCCCTTAAAT
CCTGACTTCCGAAACTTCAACCGCATCATTCATGTCTCCCCCACCCTCCG
TCCCGACCACCTCACCCTCGGCTACCCCTTCTCCGTCGCCTTCGGCCACG
CTTGGAGCTGCCACAGACAGGGGGGCGACGACGGGGTTGTCATAGGCGTG
GAGGAGCTCTTCTTGCAACGCCTGAGCCTCTGCAGTGGACCCCTTCCCCA
TCTTGCCCCACAGGGCTAGCTTGCTCTCCATGGCGCGGACCCTCTCGTTC
CAACGCGCACGCTCGGCTTGCTCTTGGTCGAGAAGCTCCTTGCTCACGAC
AGCCCTCGTCAGCGCCTTGACACTTTCGACCAACTCCAACGAACTCTTGG
AATCTTCGGGGGGAGTGGACAGGGCCTCCAAGGCACGGCGTTTCAGAACA
GCGTCGGCTTCTGCACCCTTGAGCTTCTTGTTCTCTGCGTTGACCTCGTG
TGCCAACGTCTTCATTTCCGCTCGGCTGTGCTTACCCCCGGCCCCGTTCA
TCAACTTAAGGCCTTTCGTGCTCAAGCAAGGTTTACTCTCGTCTTCCGGA
GTCGGGGACGCAGATCCCGACCCGGATGCACATCCCGACTCCGCCTCCTT
CGTTTTGGTGCCACTGGGCCTCCCACTAGTCATTTTGAGCTTCAGATCGA
CATCCTCGTTGGTACCAGCGGGCCTCCCGAAAATTGCGAAGACGAGGGAA
GCCGGATGCAGCCAGTGTTCGGGTTTGGGTCCGTACAGACGCGTTAGGTT
ATCTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNTACTTCTAGTACAAAAAATTGCGCAACACGAGCGACGAGCGG
GGCGCCGCCACTAAAGCACGGCCTCTACCTACATAATCCGAATCCACTCG
CCTGTCCCAGATTCTGTTGAAGTCCCTCCTGATCTCACGGCCACACGATA
GGTACTTGGACCAAACCAGACCGTCGGTGTTGTAGAGCCTTTTGGCTGCG
GCAAAAGGCAGGGGCATCGCGACCGGGGCAGAACACCGTATGCGTAGCAG
GTGTGGGTAACATTTGTGTTCATCTCTCGTTGTACAGAAAATTTTCCCAC
GAAACCCTTGGAGTATGTGTGCCCAAGGTCTGTGCCCGACAAGTCTATCA
CAGCCATGATGTACCAACATCAAGACTACGCACCGCAGCACCAGCGGGAG
AGAGCGCCTAAACTATTGTACGACAGCAGTACTATTGCAGTTGTACAGTC
AGCCTGTGCTTTGTGCGTGTCCATCCCTTACCTGAATCGTTTCCGGTGGT
CATGCCCATAAGGTCTTGGGTCAGCCAACTCGGGGGGGTTTGAATGACCA
CGGTCTTCCACCAACACAGGAAGCTTGGAACGGTGAAGTTCTTGTAGTTG
GTCCTGGCGTGTGCATCCCTCTGTTGGGTTGACATGGTCCCGGCCTCCCG
CTTGGTGACAAGGCACTGGCAGTAAGCTGCCGCGTTCTGGATGAGCGGTA
GGTGCTTCGGAGTCTGTTTGGTATGACTGAGATACTCCAGCAGATC

protein sequence of EsuBft1030_3a-0001

>EsuBft1030_3 ID=EsuBft1030_3|Name=EsuBft1030_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=162bp
MWVTLIAPSKYPANSEDTAFSRTLESVRKDVECFFGILKGRFRILKLRLG
YRSKEDVDNIFSTCCILHNMLHTFDGMDVFEEDVDWVGSAGLHDPWDHDP
LTDFTSIGSTGKLSEKEGGEGGEESSETIDQHPAHRELKKQLIESFSYRK
RHNDITWLSRPT

mRNA from alignment at Scaffold_600:155975..161640-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1030_3a-0001 ID=EsuBft1030_3a-0001|Name=EsuBft1030_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5666bp|location=Sequence derived from alignment at Scaffold_600:155975..161640- (Ectocarpus subulatus male Bft15b)
ATGGTGTGGATCATGCGTTGCCCGCATGATATTCATGTATTGTAGTCAAT
CAAAGTGCGGATAACCTACATCTAAGCCCCTACCCGCGCTTAAAATCCTG
CTGTTATTTGTCCTGCCGAACAGTGGGTGACCCTCATCGCTCCGTCCAAG
TACCCGGCGAACAGCGAGGACACTGCTTTCTCGAGGACGCTTGAGAGCGT
GCGCAAGGACGTTGAGTGCTTCTTCGGTATCCTGAAGGGACGTTTCAGGA
TCCTCAAGCTCCGCCTCGGGTACCGCTCCAAGGAAGACGTCGACAACATC
TTCTCCACCTGCTGCATCCTGCACAACATGCTTCACACCTTCGACGGCAT
GGACGTGTTCGAGGAAGATGTCGACTGGGTGGGGAGCGCTGGCCTGCACG
ACCCCTGGGACCATGACCCACTGACAGACTTCACGTCTATCGGATCGACC
GGGAAGCTTTCGGAGAAGGAGGGAGGGGAGGGGGGGGAGGAAAGCAGCGA
GACGATCGACCAGCACCCGGCGCACAGAGAGCTCAAGAAACAGCTAATCG
AGAGCTTTTCTTACCGGAAGAGACACAACGACATTACATGGCTTTCGAGG
CCCACGTGAGCCTTCTTCTTTTTGCTACCACGCCGCTGCCTCGGGTATCT
GTTGCAAGCCGTTTTTTTTTTTTTACTATACGCGGTGTTTAGTAAGACGT
TCCCGCCTTGAAGATGGTGTTGTCGCGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTGG
TGCACCACCCCCATGTGACTGCCTTGGAGTGAGCGATGGGTGATGGACTT
GCATCTTGTGTTTTTTTTTGTAGCGGTGTCGAGTACATTTGACCAGCTTC
AGTTCCAACCACACTTCTTGGTGCACCACCCCCACGTGACTGCCGTGGAG
GGAGAGACGGGTGATGGACTTGCGTTTTGTGTTTTTTTTGTAGCGGTGTC
GAGTACGTTTGACCAGCTTCAATTCCAACCACACTTGTTGGTGCACCACC
CCCATGTGACTGCCTTGGAGGGAGAGATGGGTGATAGACTTGCATCTTGT
GTTTTTTTTTGTAGCGGTGTCGAGTACATTTGACCAGCTTCAGTTCCAAC
CACACTTCTTGGTGCACCACCCCCACGTGACTGCCGTGGAGGGAGAGACG
GGTGATGGACTTGCGTTTTGTGTTTTTTTTGTAGCGGTGTCGAGTACGTT
TGACCAGCTTCAATTCCAACCACACTTGTTGGTGCACCACCCCCATGTGA
CTGCCTTGGAGGGAGAGATGGGTGATAGACTTGGGTCTTGTGTTTGTTCT
CATGCATGTCAATCAACATTTCTACACTACGTGTACTGAAGTGGCATGAG
CACAAGCATACAGGCCTATGTATCGGACATTGCAACGTCAAAACGTACGA
CACTACCAACAACAAGTACGTGGACGGCTGGCACGAACCAGACCTGCGTA
TATTGTCGACACTGCCGGGGAAACAGCAGAGGACGGGGTCGTTACCTACC
TCCGAAAACACGCACCCCCTCTCACATGATTCGGAACCAATACGCACATG
TTGAAATCTGCAAACACGCGGTAGCTCAGCCTTAAGCACCCCTGAAAAGA
AACACGAGAACACACAAGCAAAGGTCCATCCAACCGTCTCTACGCACCGC
AATCAAGTTACCCTCCAGCTGCGTTGGAAGTCACCCCTAAATCAATTTGG
AGTCTGCACCATCGAACCGCACACAACCATAGATTTGTGGGAATCACCAC
CACCGTGCATCCCCTTAAATCCTGACTTCCGAAACTTCAACCGCATCATT
CATGTCTCCCCCACCCTCCGTCCCGACCACCTCACCCTCGGCTACCCCTT
CTCCGTCGCCTTCGGCCACGCTTGGAGCTGCCACAGACAGGGGGGCGACG
ACGGGGTTGTCATAGGCGTGGAGGAGCTCTTCTTGCAACGCCTGAGCCTC
TGCAGTGGACCCCTTCCCCATCTTGCCCCACAGGGCTAGCTTGCTCTCCA
TGGCGCGGACCCTCTCGTTCCAACGCGCACGCTCGGCTTGCTCTTGGTCG
AGAAGCTCCTTGCTCACGACAGCCCTCGTCAGCGCCTTGACACTTTCGAC
CAACTCCAACGAACTCTTGGAATCTTCGGGGGGAGTGGACAGGGCCTCCA
AGGCACGGCGTTTCAGAACAGCGTCGGCTTCTGCACCCTTGAGCTTCTTG
TTCTCTGCGTTGACCTCGTGTGCCAACGTCTTCATTTCCGCTCGGCTGTG
CTTACCCCCGGCCCCGTTCATCAACTTAAGGCCTTTCGTGCTCAAGCAAG
GTTTACTCTCGTCTTCCGGAGTCGGGGACGCAGATCCCGACCCGGATGCA
CATCCCGACTCCGCCTCCTTCGTTTTGGTGCCACTGGGCCTCCCACTAGT
CATTTTGAGCTTCAGATCGACATCCTCGTTGGTACCAGCGGGCCTCCCGA
AAATTGCGAAGACGAGGGAAGCCGGATGCAGCCAGTGTTCGGGTTTGGGT
CCGTACAGACGCGTTAGGTTATCTTCNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTTCTAGTACAAAAAATTGC
GCAACACGAGCGACGAGCGGGGCGCCGCCACTAAAGCACGGCCTCTACCT
ACATAATCCGAATCCACTCGCCTGTCCCAGATTCTGTTGAAGTCCCTCCT
GATCTCACGGCCACACGATAGGTACTTGGACCAAACCAGACCGTCGGTGT
TGTAGAGCCTTTTGGCTGCGGCAAAAGGCAGGGGCATCGCGACCGGGGCA
GAACACCGTATGCGTAGCAGGTGTGGGTAACATTTGTGTTCATCTCTCGT
TGTACAGAAAATTTTCCCACGAAACCCTTGGAGTATGTGTGCCCAAGGTC
TGTGCCCGACAAGTCTATCACAGCCATGATGTACCAACATCAAGACTACG
CACCGCAGCACCAGCGGGAGAGAGCGCCTAAACTATTGTACGACAGCAGT
ACTATTGCAGTTGTACAGTCAGCCTGTGCTTTGTGCGTGTCCATCCCTTA
CCTGAATCGTTTCCGGTGGTCATGCCCATAAGGTCTTGGGTCAGCCAACT
CGGGGGGGTTTGAATGACCACGGTCTTCCACCAACACAGGAAGCTTGGAA
CGGTGAAGTTCTTGTAGTTGGTCCTGGCGTGTGCATCCCTCTGTTGGGTT
GACATGGTCCCGGCCTCCCGCTTGGTGACAAGGCACTGGCAGTAAGCTGC
CGCGTTCTGGATGAGCGGTAGGTGCTTCGGAGTCTGTTTGGTATGACTGA
GATACTCCAGCAGATC

Coding sequence (CDS) from alignment at Scaffold_600:155975..161640-

>EsuBft1030_3a-0001 ID=EsuBft1030_3a-0001|Name=EsuBft1030_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=489bp|location=Sequence derived from alignment at Scaffold_600:155975..161640- (Ectocarpus subulatus male Bft15b)
ATGTGGGTGACCCTCATCGCTCCGTCCAAGTACCCGGCGAACAGCGAGGA
CACTGCTTTCTCGAGGACGCTTGAGAGCGTGCGCAAGGACGTTGAGTGCT
TCTTCGGTATCCTGAAGGGACGTTTCAGGATCCTCAAGCTCCGCCTCGGG
TACCGCTCCAAGGAAGACGTCGACAACATCTTCTCCACCTGCTGCATCCT
GCACAACATGCTTCACACCTTCGACGGCATGGACGTGTTCGAGGAAGATG
TCGACTGGGTGGGGAGCGCTGGCCTGCACGACCCCTGGGACCATGACCCA
CTGACAGACTTCACGTCTATCGGATCGACCGGGAAGCTTTCGGAGAAGGA
GGGAGGGGAGGGGGGGGAGGAAAGCAGCGAGACGATCGACCAGCACCCGG
CGCACAGAGAGCTCAAGAAACAGCTAATCGAGAGCTTTTCTTACCGGAAG
AGACACAACGACATTACATGGCTTTCGAGGCCCACGTGA