EsuBft1030_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1030_2a-0001
Unique NameEsuBft1030_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_600contigScaffold_600:161953..162747 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FSK2
ProteomeIdEsuBft1030_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length66
Hectar predicted targeting categoryother localisation
Evalue1.26e-32
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionPlant transposon protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1030_2aEsuBft1030_2aEctocarpus subulatus male Bft15bgeneScaffold_600 161953..162747 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1030_2a-0001-exonEsuBft1030_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_600 161953..162373 -
EsuBft1030_2a-0001-exonagat-exon-107935Ectocarpus subulatus male Bft15bexonScaffold_600 162421..162656 -
EsuBft1030_2a-0001-exonagat-exon-107936Ectocarpus subulatus male Bft15bexonScaffold_600 162743..162747 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1030_2a-0001-exonagat-three_prime_utr-299Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_600 161953..162275 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1030_2a-0001-cdsEsuBft1030_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_600 162276..162373 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1030_2a-0001EsuBft1030_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_600 162276..162747 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1030_2a-0001 ID=EsuBft1030_2a-0001|Name=EsuBft1030_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=662bp|location=Sequence derived from alignment at Scaffold_600:161953..162747- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAGGGAATCGGGCTGACGAGTTATACCTTCCTACCGGATCGTACCA
GGATGAAGTCATGTGCATGTACGACAAGCTGGGGATGACGGGGGCCATCG
GATCTACCGACGTGACCCACATCGGATGGGGCATGTGCCCGTTCACCCTT
GGCCGTTCTTATACGGGCAAGGAAGGATTCCCGACCATCGCCTACCAAGT
GACAGTCGACCACGCGGGTCGAGCCATCGCGATCACCAGCGGTGTCCACA
CCATCAAGGCGGATGCCCAGTACACGAAGCGCACGTACAAGCTCCGGAGG
GCGGATGGAACATTTCGGGAGCGCAAGGGGTGCTACTGAATCGTTGACAA
CGGGTACGACGAGGTAAATTCACTTGGTCATCCTAAAAGAATGAGAGGGG
ATTATCCCCTGCCGGGAAACACTCGAGCAGGGCTACTGTAGTTCAACCGT
AGGCAGACCCAGTTCACTTTGTCGTTTGTCGGCCTTAGAGAGCGTTGTTT
CCGGCGCAAACCAAACATAGAAATCTCCTTCCGCTTACGCCTACTTGATG
CCGGGAAATGGGGACAACGTGGATGCCACAACGTAACACATCACACATCG
ATGGTGTGTGTAGAAGTCGGGCAAGTTATGAAGTCACGCTGCAGATTTTT
CTGTCGACGCAT
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protein sequence of EsuBft1030_2a-0001

>EsuBft1030_2 ID=EsuBft1030_2|Name=EsuBft1030_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=112bp
MRGNRADELYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTL
GRSYTGKEGFPTIAYQVTVDHAGRAIAITSGVHTIKADAQYTKRTYKLRR
ADGTFRERKGCY
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mRNA from alignment at Scaffold_600:161953..162747-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1030_2a-0001 ID=EsuBft1030_2a-0001|Name=EsuBft1030_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=795bp|location=Sequence derived from alignment at Scaffold_600:161953..162747- (Ectocarpus subulatus male Bft15b)
ATGCGGTAGATGAATGGATGGGTCATTACTAGGGTTTAGTGTACCATTCG
GGCTTTTTGATTTATTTTTTGGATAAGTACTGGACTGTTAGAGGGAATCG
GGCTGACGAGTTATACCTTCCTACCGGATCGTACCAGGATGAAGTCATGT
GCATGTACGACAAGCTGGGGATGACGGGGGCCATCGGATCTACCGACGTG
ACCCACATCGGATGGGGCATGTGCCCGTTCACCCTTGGCCGTTCTTATAC
GGGCAAGGAAGGATTCCCGACCATCGCCTACCAAGTGACAGTCGACCACG
CGGGTCGAGCCATCGCGATCACCAGCGGTTTCCCGGAGCAGCTAATGACA
AGACCATCATCCGCTACGACGCAGGTGTCCACACCATCAAGGCGGATGCC
CAGTACACGAAGCGCACGTACAAGCTCCGGAGGGCGGATGGAACATTTCG
GGAGCGCAAGGGGTGCTACTGAATCGTTGACAACGGGTACGACGAGGTAA
ATTCACTTGGTCATCCTAAAAGAATGAGAGGGGATTATCCCCTGCCGGGA
AACACTCGAGCAGGGCTACTGTAGTTCAACCGTAGGCAGACCCAGTTCAC
TTTGTCGTTTGTCGGCCTTAGAGAGCGTTGTTTCCGGCGCAAACCAAACA
TAGAAATCTCCTTCCGCTTACGCCTACTTGATGCCGGGAAATGGGGACAA
CGTGGATGCCACAACGTAACACATCACACATCGATGGTGTGTGTAGAAGT
CGGGCAAGTTATGAAGTCACGCTGCAGATTTTTCTGTCGACGCAT
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Coding sequence (CDS) from alignment at Scaffold_600:161953..162747-

>EsuBft1030_2a-0001 ID=EsuBft1030_2a-0001|Name=EsuBft1030_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=339bp|location=Sequence derived from alignment at Scaffold_600:161953..162747- (Ectocarpus subulatus male Bft15b)
ATGCGAGGGAATCGGGCTGACGAGTTATACCTTCCTACCGGATCGTACCA
GGATGAAGTCATGTGCATGTACGACAAGCTGGGGATGACGGGGGCCATCG
GATCTACCGACGTGACCCACATCGGATGGGGCATGTGCCCGTTCACCCTT
GGCCGTTCTTATACGGGCAAGGAAGGATTCCCGACCATCGCCTACCAAGT
GACAGTCGACCACGCGGGTCGAGCCATCGCGATCACCAGCGGTGTCCACA
CCATCAAGGCGGATGCCCAGTACACGAAGCGCACGTACAAGCTCCGGAGG
GCGGATGGAACATTTCGGGAGCGCAAGGGGTGCTACTGA
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